RNA id: XM_021576696.2


Basic Information

Item Value
RNA id XM_021576696.2
length 2302
RNA type mRNA
GC content 0.51
exon number 12
gene id si:dkey-106n21.1
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 90793248 ~ 90868325 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATACAACAACTTTTTGCTAGTGATTCAACTTTGGTTCCCTTGACAACATGACGGGACTCTTCATGCTTTCCTAAGGTCCAGAGTTTCTCTGAGTTTTCcagtgagtgtgtagtgtgtggagaAGTTTGAGGGGTCCCTGTGAGCCTCAGCGTCCAGCCACCACTGTCTCTGTGCCTACGCACCAGCATGCATCTTACCCAGGACCCGAAAGTTGAGATAGGATTGAGCGATCAGGGGACGGTCAACCCTGCCTTTGGGGGCCCAGACAGTGGTCAGTCAGAGAGGATTGACATGGATGGGGCTCACACGGAGGGTCTGGAAGAAGGTCAGGAGGACCAGAACAAAGGCCTGGACCTGGTCTACTCCATCAATGATAGGCCACCATGGTATCTCTGCATCCTGCTGGGCTTCCAGCATTATATCCTGGCATTCGGTGGCATAATTGCAGTGCCTCTGATCCTGGCCGAGCCTCTCTGTATTGGAAACAACAACGCCGCCAAGAGCCTACTCATCTCCACCATATTCTTTGTGTCGGGTGTGTGCACATTGCTCCAGACCACTATCGGAACCAGGTTGCCAATCCTCCAGGGGGGTACCTTTAGCTTCATCACCCCCACTCTGGCCATACTTGCTCTGCCTAAGTGGCAGTGCCCTGCCCCCAGTGCAATGTCCCAGCAGCTTCAAAATGCCACTGGCTCCCTGCTAATGGACTCTGATGAGGTGTGGAAGTTACGCATGAGAGAGATCCAGGGGGCCATCTTGGTGTCTTCCATGCTCCAGCTAGTACTGGGCTTGTCAGGTCTAGTTGGTCTGGTGCTGAAGTTTATCGGGCCCCTGGCCATCGCTCCCACCATCAACCTCATTGGCCTCTCACTCTTCATAGAAGCTGGGAAGAAATCTGGGGCCCACTGGGGAATAGCTGCCCTGACAGTGTGCCTCATCCTTCTGTTTTCTCAGTACCTGAGCAAAGTTGAAGTTCCTTTGATTGCTTACAAGGATAAGAAGTGGGAAGTGTTCCAGTATCCTCTCTTTAAGCTGTTTTCAGCTTTGTTTGGGATGTGTGGTGCCTGGTTGGTCTGCTTTTTGCTAACCATATTTGAAGCCCTTCCCTCTCAGCCGGACCAGTATGGCTACACAGCCAGGACTGACGTGAACCTGGATGCCATCACCAGCGCACCATGGTTCCACGTCCCATATCCAGGCCAATGGGGCATGCCCACAGTGAGTGTGTCCTCGGTGTTAGGCATGATGGCTGGCGTCCTTGCCTCCACCATGGAGTCCATTGGGGACTACTATGCCTGTGCCCGTCTGTCCGGTGCCCCTCCTCCGCCCACCCACGCAATCAACCGGGGTATCGCTGTGGAGGGCATTGGCTGCATCCTGGCAGCGCTGTGGGGCAGCGGGAACGGCACCACATCCTATAGCCAGAACATTGCAGCACTGGGCATCACTAAAGTTGGCAGCAGACTGGTCCTTCAGACCGCTGGTCTCCTGATGATTATCCTAGGACTCGTTGGGAAGTTCGGGGCCGTTTTCATCACCATCCCAGACCCGGTCATCGGAGGCATGTTCCTCGTCATGTTTGGAATGATTGCAGCTGTGGGAATCTCCAACCTTCAGTACGTGGACCTGAACTCCTCCAGGAACTTACTCATCTTGGGCTTCTCAACCTTCAGTGGCCTGGTGCTGCCTACCTGGTTCCACTCAAACCCAGGCATCATTGACACAGGGGTAAAAGAACTCGACCAAGTTATAGTTGTTCTCTTCACTACGCATATGTTCATCGGTGGGTTCTTTGGATTTGTATTGGACAATACGATTCCAGGCACTGAAAAAGAGAGGGGCATTAAAAGTTGGCGTAAGAAAGTGACAGAGGAAGGCAGCACGATGACAGAACGGTCCTGCTACGATATACCTTTTTGTACTAACTGTTTACAGAGGTTCAAGTTCTTCCGGTACCTGCCTTTCCTTCCATCTTACAAGTCTCCAGAACTTAGAACATAAGAATGTCTCCAGACTTaactggaccccaggaagactagcggTGGCTAAGGTGCCAACTAATGGAGATCTGAAGAATAAAGAACAAAGAACTTGTGATTAGCACACTGTTTGCATCACTAGTATTCTCCACCACACTTTTAGACTGAGTCTGCCAGCAGCTGTGGCTTTACTGCCAATGGCATCATAACACAGGGTGGTGGGTACAGACTTGGAACTGTCACACACCTGGTTCTTCTCTCTTATTTGTCAAAATCCAATGCAATTCGCAAATGCAAATAAATTACATATTTAAGTCAA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K14611 SLC23A1, SVCT1; solute carrier family 23 (nucleobase transporter), member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229297 lncRNA upstream 4159 90789452 ~ 90789667 (+) True G202558
TU229294 lncRNA upstream 6509 90787038 ~ 90787317 (+) True G202555
TU229273 lncRNA upstream 25763 90767860 ~ 90768063 (+) True G202534
TU229253 lncRNA upstream 58009 90735525 ~ 90735817 (+) True G202514
TU228874 lncRNA upstream 84995 90708576 ~ 90708831 (+) True G202180
TU229406 lncRNA downstream 88085 90956410 ~ 91052753 (+) True G202656
TU229482 lncRNA downstream 174967 91043292 ~ 91044226 (+) True G202732
TU229613 lncRNA downstream 370192 91238517 ~ 91238847 (+) True LOC110499641
TU229609 lncRNA downstream 384035 91252360 ~ 91254789 (+) True G202844
TU229990 lncRNA downstream 411426 91279751 ~ 91279959 (+) True G203197
XM_021576685.2 mRNA upstream 87801 90701413 ~ 90706025 (+) True dusp6
XM_021576649.2 mRNA upstream 126414 90607090 ~ 90667412 (+) True poc1b
XM_021576675.2 mRNA upstream 194532 90594450 ~ 90599294 (+) True LOC110499537
XM_021576668.2 mRNA upstream 199488 90578901 ~ 90594338 (+) False cpa5
XM_021576707.2 mRNA downstream 70021 90938346 ~ 90971318 (+) True kitlga
XM_036958919.1 mRNA downstream 289136 91157461 ~ 91213269 (+) False cep290
XM_036958913.1 mRNA downstream 289232 91157557 ~ 91213269 (+) False cep290
XM_036958904.1 mRNA downstream 290383 91158708 ~ 91213269 (+) False cep290
XM_036958920.1 mRNA downstream 290412 91158737 ~ 91213269 (+) True cep290
TU228879 other upstream 76405 90716942 ~ 90717421 (+) True G202185
TU228729 other upstream 346253 90447118 ~ 90447573 (+) True G202039
TU227536 other upstream 1371388 89419769 ~ 89422438 (+) True LOC110499234
TU225538 other upstream 2925859 87866877 ~ 87867967 (+) True G199223
TU225054 other upstream 3256898 87535936 ~ 87536928 (+) True G198811
TU229614 other downstream 368700 91237025 ~ 91237991 (+) False LOC110499641
TU230045 other downstream 498012 91366337 ~ 91539373 (+) True mgat4c
TU230224 other downstream 753676 91622001 ~ 91624293 (+) True G203414
TU230248 other downstream 800511 91668836 ~ 91671899 (+) True G203438
TU230367 other downstream 958524 91826849 ~ 91847400 (+) True G203551

Expression Profile