RNA id: XM_021576723.2



Basic Information


Item Value
RNA id XM_021576723.2
length 5727
RNA type mRNA
GC content 0.48
exon number 14
gene id tmtc3
representative False

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 91046731 ~ 91157443 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCGAGCCAAAGCGCGTTCCGTCCTCTTTAAAACACGTTTCAAGTTTTATAGAAAATACATTGTATTCTccactttattttttatatttttatagtGTCATTAGATGTGTGACAACAACATTATAGTCACGGCTGTTTCAGAAATCAATGTCACTTTTTTTTCAACTTTGCCCCGGAAATGTTTTGGGATTTATTGCCAGCCTTTTTGGGAGTTTTTATGTTCCTAGTTGTTAGCGTATGCCACATTAGAATGTCAATGGCCGATAAAATACTCTAATTCACTGATCAATGAAGCCGTTGGTCAGCAATGGCTGTCGTGTCGTGGATGGAGATCTTGCTTTTGACTGGACTGGTGGTGGGATGTTACTGGAACAGTCTGTCCTGCGGCTTTGTGTTCGATGATGTCTCAGCCATCCTGGACAACAAGGACCTGCGGCCTGCCACCCCTCTCCgcaacctcttcctcaatgaCTTCTGGGGCACGCCCATGGCTGAGGAGCGGAGCCACAAATCCTACCGGCCCCTGACAGTGCTCACCTTCCGTCTGAACTATCTCTTCAGTGAGCTGAGTTCTGCATCCTACCACCTGCTCAACGTGGGGCTGCattctgtggtgtgtgtgctttTTCTGAGGTTCTGCCGTCTGTTCTTGGACAAGACCTCCAGCCTGGTTGCGGCCCTGCTGTTCGCTGTCCACCCCATCCACACAGAGGCCGTGACGGGTGTCGTAGGAAGAGCGGAGCTCCTGTCCTCCATCTTCCTCCTGGCGGCGTTCCTGGCCTACACCAGATCTAATGGAGCTGACCAATCCATCGtgtggaCTCCCATTGCTGTGACTGTTGTTCTGGTGGCTGCAGCCACTTTATGCAAGGAGCAAGGCATCACAGTCATCGCCATCTGCTGTGTCCACGAGGTGTTTGTTGCACAAGGGTTCACACTGCCCATGCTGTTGGATACACTCCTCCAGGTGCTGAGGGGTAAAGATGGTTTCCCCTATGCTGTCCTGCAGACGCTCCTCAAGCTCATCGTCCTCATCATCAGCACCTTGCTGCTGGTCATCATCAGGGTCCAGGTCATCCAATCACAGCTTCCTGTTTTTACCAGgTTTGACAACCCCGCGGCTGTCAGCCCGACTCCGGCCCGGCAGCTGACCTTCAACTACCTGCTGCCATTAAATGCCTGGCTCCTTCTGAACCCCTCGGAGCTCTGCTGTGATTGGACCATGGGTACCATTCCTCTGGTGGAAAGCCCTCTAGACCTGAGGAACCTGGCCACCCTGGCCTTCTACAGCCTGCTGGGCCTGCTGGCCTTTCACAGCCTCCGCCACTCACACTCTTCCGCCAAGACCGTCCTCATGgCCCTGTCTTTGATTGTTCTCCCCTTCATCCCAGCCTCAAACCTCTTCTTCCCTGTGGGCTTTGTGGTGGCAGAGAGGGTGCTCTATGTGCCCAGTATGGGATTCTGTGTCCTCGTGGCACATGGCTTCAGGATTGTTTCCCATAAGAGACACTTGAGGAAGATCTCCTGGCTGATGATTGGAGTCCTCCTCGCCACACACGCAGTCAAGACCTTCAACAGAAACTGGGACTGGGAATCTGAATATACACTGTTTACCTCAGCCCTAAAAGTCAACAAGAACAACGCCAAGCTATGGAATAATGTTGGTCATGCTCTGGAAAATCAAAACAATTATGAAAAAGCTCTGAGATATTTCCTTCAGGCCACCCGGGTCCAACCAGATGACATTGGAGCCCATATGAATGTGGGAAGGACCTACAAGAACCTGAATAAGTCCAAGGAGGCTGAGGACGCCTACCTGGTTGCCAAATCCCTCATGCCACAGATCATTCCAGGGAAGAAGTACGCCACCCGTGTGGCGCCCAACCACCTGAACGTGTACATTAACCTGGCCAACCTGATCCGTACCAACGACTCACGGCTGGAGGAGGCTGACCAGCTCTACAGACAGGCCATCAGCATGAGGCCCGACTTCAAACAAGCCTATATCAGCAGAGGGGAGCTGCTGCTGAAGATGAACAAGCCGTTGGAGGCCAGGGACGCCTACCTGCGGGCCCTGGAGCTGGACAGCACCAACGCTGACCTCTGGTACAACCTTGCTATCGTCAACATCGAGATGAAGGAGCCCTCAGAGGCCCTGAAGAACTTTAACCATGCCCTGGAGCTCAACCCACGCCACAAACTGGCACTCTTCAACTCTGCCCTGCTCATGCAGGAATCTGGTGAGCCCAGGTTCCGTCCGGAGGCCAATCGTCGTTTCCTGACCTACGTCCAGGAGGAGCCAGATGACGCCAACGGCTATTTCAACCTGGGCATGCTGGCCATGGACGCCAACGAGAACACTGCGGCCGAGCGCTGGATGAGGGAGGCCATCCGTCTACAGACAGGCTTCCGTAGCGCCCTCTTCAATCTGGCCCTGCTCTACTCGCAGTCCCGACGGGAGCTGGATGCCCTGCCTGTATTAGATGAGCTGCTACGCCACCATCCAGAGCATGTTAAAGGTTTGATTCTCAAGGGGGATATCCTGATGAACCACAAGAAGGACACCCAGGGGGCCAAGGTCTGCTTCCAGAGAATCCTCAGTATGGACCCCACCAACGTGCAGGGGAAACACAACCTATGTGTGGTCTACTTTGAGGAGCGAGACCTGCCGAGAGCGGAGCGGTGCCTGGAGGAAACGCTGGCCCTGGCACCCCATGAGGAGTATGTGCGTCGCCACCTGGGCATCGTGCGCGGTAAGATGGCCGCCATGTCCGTGGCAGGGCAGCCGCTGAGCCCAGCGTCAGCAGAGGGCGCAGCTACGCCATCCATGAAGGAGgaaaagaaagggggaggaggaaaggaagaggaggaagggaggggagccaCTGGCAGTGCTGGGGCCGGGAGTAAGAAGAATGTACGGAAATCCTCCTCGGCAGAAAGCCTTAGTGGCAACATCCAGTCAGAGCTTCTTGACGATGGCCAGGCTGATAAGCAGCAGCGGACTAAGAGCAAATCCACAAAAGAGATTAAAGACATAGAAAAGAAACGGGCGGCCGCCTTGAAGAGACTGGAGGAGATTGAGCGCATATTAAGCGGTGATTAACCTTGTTATTTACCGCAGTGCAGGACTACTTTTTGGTAGAGCTAGTTACAGCTCCTGAATCACAGATgtgatgcgtcccaaatggcaccctattccctatatcagcAGGCAAGGCCCcttgcaccacttttgaccagggcccatagggtagtagcccatagtagtgcactatataataaTTAGGGTGGCATTTCGGACACAGCCATAAAGATGTTTTGGTTTTCATAAACAAATGCCCTCCTCATTTCATCATGCATGCTTTAACTCCTTTGATTGTTCGTTTGTTTTGTTTATCATGTTTACAGGCTGCCCTACCTTCTGCGTTCCCTTACAGGCTGCCCTACCTGCTGCGTTCCCTTACAGGCTGCCCTACCTGCTGTGTCCCTTTTATTTTAACACCATTGCAAAAATCTAAAAgggatttattttttttgcacagCACAAGAAAAGcacagtttttaaaaaatcttcaCTACAGGTGCAAAACCCTATGTGTTGTTTTTTTCTGAATGGCATTTTATCGTATGCTAATTATTTATGCTTGTTTGATTTGCTACGTTTACTAGCCTACTTGTTGATCACTGGATTTTATTAGATTTTTGTGTAACTcactcacttttttttttaaaggaatgaTTGCATCACAAACAATTAAAGGAAATGACTTAAAGGAAATGACATAAAGAACACCTCATGGCCCACTTCAGGCAGGCAGGATCTCTGTATGTTGTATGCATCTCCAAATAACCCATTACTACAGCTGCTGCACCTGCATATTATACTACATTACACCCCACGGTGCAGACAGACGCCAAGCCCCGCCTCCTCTGACATCTTCCACTTACTATTTTCTCTTATTGATCTCACCCTGTGCTTCCTGATTTCCATGCAGTCAGTGTTGCTTTGCTCATAGCACAGCCCTTATCTTACAGTGATGCCATTTGGAGCTGTTGTTTCAttcaacccccacacacacacctacccacaCACACCAACCGACCCGCCACAAGACAGGTGTATGGTTTCCTGTTTGTTGCCTATTAGTCTTCACGTATCATACTGTATATCTTATTTCAGTAATAACAGCATTGTTTGTGTGAGGATTAACATATGCTCCcccctcctcaaccctctctcccctcctccaccctcttcacctctctccacctctttcctcACCCCATGTTCTTCCTCAAGCTGTGCCATGTGTTGTTTCTCATTTACACCAGAAGAttcctctctcaatgagagatgATTTCACAGCACACTTCTTGTACTGAACTAGGCCCATTTTTTCAAAAGCATTTTAAGGCTAAGTTCCTTAGAACAAGAGTAAAAGAAAGAGGATTCTATCTCCTTCTGTAGCTCACATCGTTGACCTTGTCCTCTCTCTCGCGCACACTCTCGCcctctttctcgctttctctctctccatctcatgaACATCAAGTCTAACACATACAGTGAATGTAATAAATATCACTAGATTTTCCCACACTCGTCTTGCTCTTGCGCTCATCTGCAACCATCTGAATAATGTTTTTTCAACAGTGGATTGCGCTACCTTTTGATGCTATCTTGATTTTCTTTGGCTGTCATTCTCATGGACACGAAGATTGTCGTTGAGTTGGAACTACCTGGAATGTCATGAGGAAACAAAAAGCGATTATTCCAGCCTATTGTTGTTTAGCTTTTACAACCTTATTTAACCCCTCAGTGTACTGTGATCTTTGTATCCTGGTGATTAGTTACATACAGATACTGTCATGTGCAGTGTCAATCTGTTCCTTTCTCTTCACGCTAACTAAATGATGACTGTGTGTCCATCTGTTCATCAACCATTTCTGTCCGTAACCATTACTCAAATGGAAAATCTGGTAACAACAAATGAGAAACATTGTCAGTGTAATATGATGGTTGGCCTGGGGCCTACGCCACAGGTATGACCCCTTAACTCTAAAAGCATTTTCAACATGATAATTCATTACTTATCATTGAGCTCCTAAAAAAACAACGTATTGTGCTAGTTAGTGTGTGTACAGATGCATGTACATTTTTTACATGCACTGTAAGCTCTAAGTACTGTCATTGTTTGCCACTTGAAATATATGGTACGTTTAGCATAGCTATCTTTTATCATGCAATACAAGTGCTCTGAAAGTGTTACAATTGTAATCAATCAAGAGTGTTGAAAACATACCTTTAAAGAACTGTCTCGCCTGTAATGGTATCAGTTGTACAGAGGACATTAGTCAATCAGCCACTAAGATAGCCAACTAACATTTCAAATATTTTTAATCACCATATTTATCACTTTGGTCCTACATATGTTCACCTGTAATTTAATTGATACATTAATCATTTTTCATTGAACTACATTCTTTTGTATGGTAACCAAAAACACTTACATTTTTAAAGCTATATCCCTTTTTGTAATAGCAGCCCAGATGTTGTGTTGACTCCTGGGTGAGTGATGGTAGTGGAGGGTTCAGGGTTGTGTTGACTCCTGGGTGGGTGATGGTAGTGGAGGGTTCAGGGTTGTGTTGACTCATGGGTGGGTGATGGTAGTGGAGGGTTCAGGGTTGTGGTTTTCAAATAAAGGCTGTTTACTTTATGACTGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU229699 lncRNA downstream 119719 90850730 ~ 90927012 (-) True G202932
TU229651 lncRNA downstream 264754 90781693 ~ 90781977 (-) True G202884
TU229639 lncRNA downstream 285589 90760926 ~ 90761142 (-) True G202872
TU229638 lncRNA downstream 286094 90760392 ~ 90760637 (-) True G202871
TU229637 lncRNA downstream 287312 90759183 ~ 90759419 (-) True G202870
TU229954 lncRNA upstream 80788 91238230 ~ 91238437 (-) True G203162
TU229955 lncRNA upstream 81075 91238517 ~ 91238814 (-) True G203163
TU230630 lncRNA upstream 240622 91398064 ~ 91398482 (-) True G203780
TU230680 lncRNA upstream 306868 91464310 ~ 91500557 (-) True G203829
TU230889 lncRNA upstream 602296 91759738 ~ 91801240 (-) True G204018
XM_021580291.2 mRNA downstream 439782 90600049 ~ 90606949 (-) True cep41
XM_036958876.1 mRNA downstream 439795 90599314 ~ 90606936 (-) False cep41
XM_036958827.1 mRNA downstream 470258 90557570 ~ 90576473 (-) False tes
XM_036958830.1 mRNA downstream 470258 90557570 ~ 90576473 (-) False tes
XM_036958834.1 mRNA downstream 470258 90557570 ~ 90576473 (-) False tes
XM_021576729.2 mRNA upstream 57225 91214667 ~ 91219570 (-) True c2h12orf29
XM_021576733.2 mRNA upstream 69656 91227098 ~ 91230202 (-) False lyve1b
XM_021576734.2 mRNA upstream 69852 91227294 ~ 91230204 (-) True lyve1b
XM_021576730.2 mRNA upstream 82302 91239744 ~ 91254841 (-) False eif4g2b
XM_021576731.2 mRNA upstream 82302 91239744 ~ 91254841 (-) True eif4g2b
TU228979 other downstream 605306 90377557 ~ 90441425 (-) True G202279
TU228163 other downstream 1436841 89606837 ~ 89609890 (-) True LOC110499346
TU225173 other downstream 3720262 87322139 ~ 87326469 (-) True G198912
TU224521 other downstream 4142775 86903036 ~ 86903956 (-) True G198342
TU223618 other downstream 5083066 85959845 ~ 85963665 (-) True G197554
TU230773 other upstream 431770 91589212 ~ 91591049 (-) True G203915
TU230896 other upstream 629745 91787187 ~ 91788103 (-) True G204024
TU231426 other upstream 1240618 92398060 ~ 92439601 (-) False LOC110499897
TU232213 other upstream 1804602 92962044 ~ 92962934 (-) True G205192
TU234006 other upstream 3154982 94312424 ~ 94312774 (-) False G206742

Expression Profile