RNA id: XM_021576732.2


Basic Information

Item Value
RNA id XM_021576732.2
length 2736
RNA type mRNA
GC content 0.48
exon number 8
gene id LOC110499641
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 91235465 ~ 91239737 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TaggcactgtaggtcctggattaacctctacatcaccagaggaacaaatAATGTTATCATGATGCCACTTTGATTGAACGACGTTGTCATGGATGTTGTGTCTATTCATTCTTTGTAGTGATTCACGTGGAACCAAAGCAGGGCAGTGGGATTTGTTCTACTTTGACTGCTGTGTGTAAATAATACATCCAAAGAGGAGAAGGGTTAGTTTCCTGTTCTGGGGTAAAATGGATCACTGGAGCTCAGTGTTTGTAAAGGATACGACGAGAGCCTATCAGAAAGTGTAGTAGAGGCTAATTGGCCACACTTCCTAAGTCAGGAGTGACCACCAGTCTTTTCCAGTAGTGTCGGTGAAGAGTGTAGAAACAAGTGTGGGATATTATGTCACTCTATAAAAAACACATCCAAGCGTTCTGGTAAATAGTGTGATAATTGTTTGTCTGTAAAGTCAGAGTCCCCTGTTCTCACTTTCCTGATATTCATAAATCTAAAGAGAAGTTATATGATAATCTGATCCTCCATAGTGATTCCTTCATAGAGGATGATATCAACCACCTCTAAGTAGTCTCTAAGTAGCAGTGTAATTAATCAAGCTAGCAGGCCCCCACCCCAGCACTTCTGCCACCTGTTAAGGTTTCCAAGCACCAATGGTAGAGTACGGTTTCTCTCCAGTCCCTCGTGCTGACCTATCACATTACCCAATGAATATTTCATCCATTCCTCCAGTGATAGGATCCTTCACCTCCCAGAGACCAGTGGAGTAAACACAACACTAGACAAGGACTTAATTCCTGAAGTAAGGAGAGTATCTCTTGGTGGGATTTGGCAGTTGATGAGTTCCATCCATACTCGAAGCCTAGTATACCTACTTGTCTACTTGTAAGGTTGAATCAGGTGGAATCGGACCACATCTCTGGATGTGGATTCAACATGTCGCTGAGAGCCACATCTCACAGCAACCTGCAGTGCCTCTCCTCACCAAAGCCTCTGGCGTTGGACAACGGGATATACAAGACTTTCTCCCTGAGCAGCAGCAATATGAATGGGAACGGGGGAGGTGGCGGGAGGATAGTGTTTGGGAAGGAGCAGGTGGAGGAGGTGAAGGGGTTCTCTACGCCACACAGGAGGCCTGTGCGGGCGGTCAGACCGGTTAGTGCCCACAGCGTTAACGTCAGCGGATCCTTCCTACAGATCAACCATCTGCAAGGAGAGCTGGTGAGGAAGAGAAAGGAATGTGAAGACCTAAAGAAGGAAAATAAGTATCTATCCAATGAGATCCACATGGAGCGGATTATGATGCGGACAGAGAATGAACTCACCATGAGGAACCTGAGAAACCTTAACCAGGAGCTCCAGGCCCAGGTCAAAGAGCTgaagcacaaggtgtacctggcCCAGCAGAGGGCGACGTTGTGCACCCGAGTGGCGGATGAGGCGACCGATGCGCGGGGCGAGGCAGAGAAGCACAGGGCCCTTGCAGAGGCCCGGGCCCACAGCCTAAGGCAGGACAGAGAACTGACAGAGGCAGACAGGAGCCAACTGAGCGAGGACCTGCTGAAGCTAAAAAAACAGCACCAAGACGCTCAGCTTCTTCTGGCACAAACGGAGAAGAACTATTTTGAGACAAGGCTGAAGCTAGACAGGATATCAGGAGAGAAACAGGCTCTGCTGGAAGAGAACAGATGTCTGGAGGGGGACAGGGATGCTCTGAGGCACAAACTCAGACAAGTGATGGATGAGAACACAAAAGTCAACGAAAAGGAGGCGAGTTCGAGGCGCAGGGCGTTGGTAGCGGAGGAGCAGAGTGAGAAGGACAGCCAGGCGAAGCAGGAAGCTAACCAGGAGAGGCggctggtggagaaggagaggcaggagcgCACAACCGAGTGTCTCAACTGGAGGGAGAAACATCAGGCTCTGGCAGACATCTTCAAAGCCCAGGAGGACCTCAAGTCTCAGAGGCAGAGCAAAGCATGTCAAGCTACTATCAAAAGCTTTTTCCTCTGCATGACAGAAAATGACCAGAGGGTGAAGATTCTGAAGAATCAAGATGGCACTCCCAGGAACTTCACAGAAGGGGATCCAATCTTCATCTCCACACCAGAGCATGGGGCTGAGGATGATGACAGGAGCTCATCCAGGAGCATGTTCAGAGTATCTGCCCCGCGAGTGGGAAAGGACCTAGGCCCATCTCACTTTGGTGATCTGTCTCCCGGCCTGGGAGGGGAGCACGAGGCCGGGCATCCACGGAGAAGCAGGAAAACGGTGGAATATTTCTGGATCCCAACAGATGAGGAATGACGGCATTATGCACATTGTTCACTGACGAGTTACAACCCATTTTGGAATAGCCTGTTTTGTTTGTTGATGCTTTTCTATTTACCAAGGGAAAAATGGAATGTGTCGTTTAAATGTAAAGAGTAGTCAACTTTCATGATGCGAAAGATGAAATGAcaatcatggggcggcagggtagcctagtggttagagcgttggactagtaaccgaaaggttgcaagttcaaatccccgagctgacatggtacaaatctgtcgttttgcccctgaacaggcagttaacccactgttcctaggccgtcattgaaaataagaatttgttcttaactgacttgcctagttaaataaagataaaataaaaataatcagcACGGGAAAGTGAACACCATTTATATAGACATTTGTAATAGTTTGAATTAAAAAGTGCAAAGGACAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229406 lncRNA upstream 182712 90956410 ~ 91052753 (+) True G202656
TU229482 lncRNA upstream 191239 91043292 ~ 91044226 (+) True G202732
TU229297 lncRNA upstream 445798 90789452 ~ 90789667 (+) True G202558
TU229294 lncRNA upstream 448148 90787038 ~ 90787317 (+) True G202555
TU229273 lncRNA upstream 467402 90767860 ~ 90768063 (+) True G202534
TU229609 lncRNA downstream 12623 91252360 ~ 91254789 (+) True G202844
TU229990 lncRNA downstream 40014 91279751 ~ 91279959 (+) True G203197
TU230047 lncRNA downstream 128822 91368559 ~ 91369003 (+) True G203251
TU230079 lncRNA downstream 172276 91412013 ~ 91413548 (+) True G203281
TU230225 lncRNA downstream 378625 91618362 ~ 91644022 (+) True G203415
XM_036958919.1 mRNA upstream 22196 91157461 ~ 91213269 (+) False cep290
XM_036958913.1 mRNA upstream 22196 91157557 ~ 91213269 (+) False cep290
XM_036958904.1 mRNA upstream 22196 91158708 ~ 91213269 (+) False cep290
XM_036958920.1 mRNA upstream 22196 91158737 ~ 91213269 (+) True cep290
XM_021576707.2 mRNA upstream 264147 90938346 ~ 90971318 (+) True kitlga
XM_021576735.2 mRNA downstream 126545 91366282 ~ 91543765 (+) False mgat4c
XM_021576736.2 mRNA downstream 142288 91382025 ~ 91543765 (+) False mgat4c
XM_036958969.1 mRNA downstream 342847 91582584 ~ 91591130 (+) True rassf9
XM_021576786.2 mRNA downstream 515222 91754959 ~ 91779981 (+) True slc6a15
XM_036959018.1 mRNA downstream 597077 91836814 ~ 91852352 (+) False LOC110499735
TU228879 other upstream 518044 90716942 ~ 90717421 (+) True G202185
TU228729 other upstream 787892 90447118 ~ 90447573 (+) True G202039
TU227536 other upstream 1813027 89419769 ~ 89422438 (+) True LOC110499234
TU225538 other upstream 3367498 87866877 ~ 87867967 (+) True G199223
TU225054 other upstream 3698537 87535936 ~ 87536928 (+) True G198811
TU230045 other downstream 126600 91366337 ~ 91539373 (+) True mgat4c
TU230224 other downstream 382264 91622001 ~ 91624293 (+) True G203414
TU230248 other downstream 429099 91668836 ~ 91671899 (+) True G203438
TU230367 other downstream 587112 91826849 ~ 91847400 (+) True G203551
TU230483 other downstream 782018 92021755 ~ 92024742 (+) True G203646

Expression Profile