RNA id: XM_021576731.2


Basic Information

Item Value
RNA id XM_021576731.2
length 4512
RNA type mRNA
GC content 0.47
exon number 21
gene id eif4g2b
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 91239744 ~ 91254841 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGATTCGCTAAAAGAAACATAGCAACGAATTGCGTGAACAATGCATATTGTGACATTTCGGCCGCTACAGATCGAGTTCAAGAATGACGTCGTAGATAGACTACCTTTTAGTCTTCTCTAGCACGAAGGAAAAGTGTACGTTCAGATAGCTACTCTGTCGTACCTGATATCATTGGCTCTCTCACGCTTTCAAATAacctttttttatatttttattttacatttcttCTTTTGTGCCCACCAAAAATACAACACTGAAGTTCTTTTAGTAAAGCACCGttttctccacccctccctaTTATTATTTTAAAGATTCATCGTTGTCAAGCCGCCAAAGTGGAGAGTGTGATTGCAGAAGGGGGTGCTTCTCGTTTCAGTGCTTCTtcgggaggaggaggtgttaggGGTGCACCTCAGCACAATCCCAAGACTGTCGGCAACAGCGAGTTCCTGGGGAAACCCCCAGGGCACAGCGCTCCGAAATGGGTTCCTTCACGAAGCACTAGACGAGATGCCAACTCCAGCAATGAAAAAGAGCGACACGATGCAATCTTCAGGAAAGTGAGGGGCATACTCAACAAGCTCACGCCTGAGAAGTTTGACAAGCTATGCCTTGAGCTACTCAACGTGGGCGTAGATACAAAACTCGTCCTTAAAGCAATCATCTTGCTGatTGTAGACAAAGCCCTAGAAGAGCCCAAATATAGCTCGCTCTATGCTCAGCTATGTCTGCGTTTGGCAGAGGACGCACCAAACTTTGATGGCCCTTCATCCGAAATCCAAACATCCCAAAAGCAGAGCACTACCTTCAGAAGACTTCTAATTTCCAAGCTTCAAGATGAATTTGAAAATCGCAGCAGAAATGTTGAAATCTATGACAAACATGACAACCCTCTTActtctgaggaggaggagcagcgtgCCATTGCCAAGATCAAGATGCTTGGAAACATTAAATTCATCTCGGAACTTGGCAAACTCGACCTCATCCATGAATCTATCCTTCATAAGTGCATCAAAACACTTTTGGAAAAGAAGAAGAGAGTCCAGCTCAAGGATATGGGGGAGGATGTGGAGTGCCTCTGTCAGATAATGAGAACAGTGGGCCCTAGACTCGACCATGACAAAGCTAAGTCTTTAATGGACCAGTACTTTGGCCGTATGCTATCCTTAATGAACAACAAGGAGTTGCCTGCCAGGATCCGCTTCCTGCTGCAGGACACGGTGGAGCTGCGGGACAACAACTGGGTCCCCCGCAAAGCATTCATCGACAATGGACCAAAGACCATCAACCAGATCCGCCAGGAGGCAGTGAAAGATTTGGGTGTTTTCATTCCAGCGACCATGGCTCAGGGGATGAAGATGGACTTCTTCTTGGAAGGCCCCTTCATGCCCAACCGAATGAAAATGGAGACTCTCGGGGGATTGGCTGACATGTTTGGGCAAATGCCAGGCGGTGGGATCGGGACGGGCCCGGGGGTCATTCAGGACCGGTTCTCTCCCACTATGGGACGTCATCGCTCCAATCCGCTCTACAACGGCAACGGACACAACAGCCACAACACCGCCCCCCAACCACAGTCTCAGTTCGAAATGGGTTCCAACAAGCCCTTCATCAAGTCCAACCAGGTGCAGAATCAGCATTTCCAGAACCAGCAGGTCCAGTCCAACAAGGACATGCCTCCACGCTTCAGCAAGAAGGGACAACTCAACTTAGATGAGATCAGCCTGAGACCGGCTCAGTCTTTCCTCCTCAACAAGAACCAGGTTCCCAAATTGCAGCCCCAGATGCCCACTATGATCCCCCCCAGCACCAACACCCCTCCAATGGGACAGtCTCCACAGCTCGGCCTCAAAAGCAACCCTCTTCCCATTCAGGAGAAACCTCAGAAGAGCAGCAAGAAACCACCGCCGGCTAGGGAAGAGCTGCTAAAAATAACAGAGACAGTTGTGACAGAGTACCTGAACGGTAAGCACATTGATGAAGCTGTTAACGGCATCAGAGACATGAAGGCTCCCAAGCACTTTCTGGCAGAGATGCTGGGTAAGGTCATCGTGGTGTCGCTGGACCGGTCTGACGACGACAAGGAGCACGCCAGCACCCTCATCCACACACTACGTACCGAGGGCCTCATCACCGGGGAGAACTTCATGCAGGCTTTCCTCAACGTGCTGGACCAGTGTCCTAAGATCGAGGTGGACGTTCCCCTGGTCAAGTCGTACCTGGCCCAGTTTGCAGCACGGGCCATTATATCTGAGCTCGTGAGCGTGGCCGAGCTGGCCCAACCACTGGAGAATGGAACCCACTTCCCCCTCTTCCTGCTCTGCCTGCAGCAGACTGCCAGACTCAAGGACAAGGAGTGGCTCACTGACCTTTTTCAACAGAGCAAGGTCAACATGCAGAAGATGCTACCCGAGATAGACCAGAACAAGGACCGCATGCTGGAGATCCTGGAGGGTAAGGGTCTGAGCTTCTTGTTCCCCCTGTTGAAGCTGGAGAAGGACCTTTTGCTGCAGATCAAGGCTGACCCCTCTCCCCAGGCCATCTACAAGTGGATCAAAGACAACATTTCCCCCAAGCTCCACACTGACAAGGGCTTTGTCAACATCCTCATGACCAGTTTCCTGCAGTACATctcaggggagctgtgttgtgtggaggtggtggaggaggaagaggaggagggcagTGGTGGAGAAGAGCAGGTGGCAGGGCCCTCCAAAGAACAGCTTGACCAGGAGAAGCAGCTGCTGCTGTCCTTCAAACCAGTCATGCAAAAGTTCCTACATGACCAGCCTCAGCTGCAGGTCTCCGCCCTGTACGCCCTGCAAGTGCACTGTAACGCCAGCCACTTCCCCAAAGGCATGCTGCTGCGCTACTATGTCCACTTCTACGACATGGAGATCATTGAAGAAGAAGCCTTCCTAGCATGGAAAGAAGATATTACCCAAGAATTCCCTGGAAAAGGAAAAGCTTTATTCCAGGTCAACCAGTGGCTAACCTGGTTGGAAACAGCGGAGGAAGAGGAGTCTGAAGAAGAGGCCGACTGAGAAACCAACCAGAACTGCCAGGCACCATAGAGCAGAGAAACATACTTTAACATTCAGTACAGATATGTTACCACCATCACCTCCCCCCATTATtaaactactgaacataaccaCTGCCAGAGACTGCTTATGTCCTGCAATATAAAGCCAAGCATGTTATCAGGGCATAGTAgataactgtctgtctctgtggtctAGAGAGGCTACTGAAGCTTCTGTTTTTATAGTACCTTCCATTTCACCTTTAAAGGTTGATTTGTTTTGGGTCCTGTTTCTGCAATAGGAGTTGAATGTTGCCTATGGACTGACTCAAACGACATCTGTACTTTTGTAGGTTTTCTCCTACTGTGACAATGTAGTTAGTTTTGCCATATTTACTCATTGTGACAGCAGTATTGCATTTCCTCGTGGTATTATTTCTAATCCCCTTTGAAGAAAAGGCTTGTATTTGACACCTGTTTTAGCCTTCAAGTATTTCCCCTAAAGGTCATCCAAAAGATGCCCAATCTAGACAGTGGGTCAACTTTAGTAAAACCATGGATTTTGTGTGCTTGGTCAACCGACGCTTATCTGAAATACATTCtcccattattttttttttaaccaaagtGCTCTTCAATGCCCTGTCGCTGATGAGGAACATGTTACATTTTGTGTATATGGGGAACCTATTCCTCAAGCAAAGCTGTAGACTTAAGACACACATCCTTCTGTCATACCTGAGTTGCTGCAAGACTCCGTTAACATGGAATCATATAAACTGTAAGTTAATCATTGGTGTGCTGCCGTAACGTTTCAAAAGTTGTCTGTTTCTACCTCTTAGTTAGATGGGCTTTGTGTTTTGTGCTGGGATACAGAAGATCTTTTTTAGAGAGACTTATACTAAAAAGCCCAAGCAAATGCAGAAGTCTTCGAAATGAATATCGCGGTCTACTTCCACAATACAACCTTGGATTGGACTTCCAATGGAGCTCCCCTTATGCGGTTCTCTAGTGTTTAAGAACGTAAGAAAAATACACTTAACTTGAATTGGATAACTCGTTGTTGTTCCCTATCTCTTTTGCCTGCAATTTGTCAAAGTTGTGGTTCAGGAATATATTCTCCCCAGCATATTGAGTTTAAGAAAGTAGAACGATCTATTTGATTTGTTTCTCAAACCAGAAATTTGGAACCAAATACATTTTATCCTGTCTTTATTGGTGAATAAAGGTTTACATAGAGAAAGTACTCTTGCTTCGGTCGTCCCCTTGTAGATCAGGAAAAAAAGGCTCAACAGACCAGTAACTCAAGTCTTAATGAAATCATGAGAAATACAATTTTAACTTTGCCCAACAAGATTAGCTAATGTGCTCTCAAGCCATGTGTATTTAGAAAGCAAAAAGATTTTGATCATGTTGTATTCAAGGAATGACTATTGTGCACCTATTGCATAACTGTCAATAAAGTCCAATACTTGAGCAC

Function

GO: NA

KEGG:

id description
K03260 EIF4G; translation initiation factor 4G

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229955 lncRNA downstream 930 91238517 ~ 91238814 (-) True G203163
TU229954 lncRNA downstream 1307 91238230 ~ 91238437 (-) True G203162
TU229699 lncRNA downstream 312732 90850730 ~ 90927012 (-) True G202932
TU229651 lncRNA downstream 457767 90781693 ~ 90781977 (-) True G202884
TU229639 lncRNA downstream 478602 90760926 ~ 90761142 (-) True G202872
TU230630 lncRNA upstream 143223 91398064 ~ 91398482 (-) True G203780
TU230680 lncRNA upstream 209469 91464310 ~ 91500557 (-) True G203829
TU230889 lncRNA upstream 504897 91759738 ~ 91801240 (-) True G204018
TU230843 lncRNA upstream 516461 91771302 ~ 91773128 (-) True G203975
TU230924 lncRNA upstream 596476 91851317 ~ 91852018 (-) True G204050
XM_021576734.2 mRNA downstream 9540 91227294 ~ 91230204 (-) True lyve1b
XM_021576733.2 mRNA downstream 9542 91227098 ~ 91230202 (-) False lyve1b
XM_021576729.2 mRNA downstream 20174 91214667 ~ 91219570 (-) True c2h12orf29
XM_036958924.1 mRNA downstream 82301 91046731 ~ 91157443 (-) True tmtc3
XM_021576723.2 mRNA downstream 82302 91046731 ~ 91157442 (-) False tmtc3
XM_036958964.1 mRNA upstream 305859 91560700 ~ 91581306 (-) True nts
XR_002469996.2 mRNA upstream 351904 91606745 ~ 91624204 (-) True LOC110499699
XM_021576768.2 mRNA upstream 413556 91668397 ~ 91673730 (-) True alx1
XM_021580318.2 mRNA upstream 437012 91691853 ~ 91740829 (-) True lrriq1
XM_036958987.1 mRNA upstream 525360 91780201 ~ 91837027 (-) False lrrk2
TU228979 other downstream 798319 90377557 ~ 90441425 (-) True G202279
TU228163 other downstream 1629854 89606837 ~ 89609890 (-) True LOC110499346
TU225173 other downstream 3913275 87322139 ~ 87326469 (-) True G198912
TU224521 other downstream 4335788 86903036 ~ 86903956 (-) True G198342
TU223618 other downstream 5276079 85959845 ~ 85963665 (-) True G197554
TU230773 other upstream 334371 91589212 ~ 91591049 (-) True G203915
TU230896 other upstream 532346 91787187 ~ 91788103 (-) True G204024
TU231426 other upstream 1143219 92398060 ~ 92439601 (-) False LOC110499897
TU232213 other upstream 1707203 92962044 ~ 92962934 (-) True G205192
TU234006 other upstream 3057583 94312424 ~ 94312774 (-) False G206742

Expression Profile