RNA id: XM_036958992.1


Basic Information

Item Value
RNA id XM_036958992.1
length 8826
RNA type mRNA
GC content 0.53
exon number 50
gene id lrrk2
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 91780201 ~ 91837180 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGAATGGAATTTCAGAAATACTAGTACGACAACTTCTAAGTTTGGGTCAGCTGCCGTATTATGCTATGCGTTCAGTTACATTGTTAGTGTGTCTTCAATGGCTGCAAGTAACATTATCAGTGCAACGTTGTTGCTTTTCATGTAGTCCACTGTCGCTTTTGGAGGATTGTAACTATAGATACATGCATTTAAAGTCGTCATTTATCGAACAACATATCAAATACAATGGTTAACAAGGAGGAACTGGAAGAAAGATTGAAAAAACTATTAGTGAGATtgaaaaacctacaggaggggaAGCAGTTGAGTACCCTGGTTCAGATCATCCAAGACCTTCTTTTCCTGGCGCACACTGATGACTGTGCAGAGCTATTTGAGGATAAAGATGTCCATGTGCCTCTTATGGTGGTGTTGTCGACTTACAGCAACAGCAGAGGGGTGCAACAGGTGGGATGGTCGTTGCTGTGTCGGCTGATGGAGATATGTCCTTCCACCTTGGACTCACTGGTCAGGCCCCTGGGAGCAGGGAAAGACTGGGAGGTACTTGGAGTGCATCAGCAGATCCTTAAGGTGTTGTCCCAGCACAGTGGAGACTGCAGAGTGATGATGGTTGGGCTTAGGGCACTGGCTCTGCTCCTCAGATCAGATGTGATCGTGTTGTTGATTcgggatgaggaagaggatgtgTTTAGTTTGATCGTTGAGGGGATGAAGACTTTCCCCTCCAGTGAGGAGGTTCAGATTCAGGGCTGCCGTGGTCTCCAGCTGCTACTGGACAGAGTGTCTGATGACGACCTGGTAGAGTTTCTGGAGAACCAGGACCACAGTGTGGTTCTAGGTGCTCTCCACCATTTTCACGACAGTGAAGACCTGTTTCTGCAGGCCATGAAGGTACTCCTTCCTCTAGCAGGTCCTGCCAGTAATGTGGAGATCCTGATGTCGGGGGGAGAGAGGTGTTACAGTGTGGTGGCTGGAGCCATGGAGTCGTTCCCAGAGGTCGAGGCACTGCAGGAGGTCGGCTGCTGTCTGTTCAGGAAGTTTACATcagAAAGATATTGTAGTATTCTGGTGCTGAATGGGGTGCATAGGGTCACTGTAAGAGCCTGTTTGACTTACCCTGAGAACGCCACTCTACAAGCTGCTGCACTCTCCTGTCTGGCTGCCCtcaCTGAAACCATAGTGCAGAGCAAAGCTGTGGtgaatgaagggatggaggagggagaggcggaggagaacagagggaaggaggaggaggtggatgaTGTGGGGTTGTGCTGGATGGAGGCCTGCTGCAGAGCTCTGGAGGTCCATGCTGCTGATTCCACAGTGCAGGAAGCTGCATGTTGGGCCATACACAGCCTGCTATTGCATGGCAGCGAGTCATGGCACCATTCCACAGAAGAGCAAGACGGAAGGACACCAGTCCACAGACAGATCATGGCTGCCATgctgctccactcctcctcccctgGGGTGTTCCAGGCTGCTGCCAGCGCCATGGGAACACTCATCACCTACAATAGTAAAATGCGATCTCTGTTGTTGTCCAACGGCCTCCATGTGAACGTGGTGGAGATGATGAAGAGACATCTGTCCTCTCCAGAGGTCTCCGCAGGTGGATGTAAACTGCTCCACCTGCTCTTCAAGGGAAGGATGGCCAGTCTGGATGAACTGGACATGGCCATGGGTCAGATCGTTAGGACCATGAAGGTCCATAACTTCATACCTGAGGTCCAGCTGGAAGCTCTGAGGGCCAGCCTGGCCTTCCTCTGTCCTGATAGAAGTTTGCGGGTGTCTGATCACGGTGTGTCTGTGGCTGATCCAGACACAGTGGACGTGTCTCTGAGGGTGCAGAAGAACCAGAGTGTGGTGGAGGGGGCCCACACAGTCTACCTAGAGACACTCAACAGGTTTATTAGCAGTGCAGCCATCCAGGAGTGTGGCCTGCGTGTTCTGTCTGCGCTGGCTGACTGCTCTGGTGCTGTAGACCTGCTCTGTCAACAGGGGGCAATAGACACTGTGCTGCACACACTACAGATGTTCCCTAGGGAACGAGAAATACACTACTGGGGTCTAAACCTCCTCTACTGCCTTGTGTCTAAGAAGAAGCTGTCCAGGATGATAGTTCCCGTCCTGGCGTCTGTTCTCGTTACCAGTCTCCTGCAGTACAGGGAGGACACAGAGATGCTGTTAAAGGGGTTCCAGGTGGCCCTCCGAATGCTGGATGCCTGCTCAGGGGCAGCAGGGGAGCTGCAGAGGGAAGGCTTTGACAGAGAGATCTTCCTCCAGCTCAAAGAAGGACCACCTGACCGGTGCAGCTACCCGctCTCCCAGCTGCGTAAGGCTGCATGCCTGGCCCTGTCCAAGATGTGTGGCGATGCAGAGCTGAGGTACAGTATGCTGGAGAAGGCCTGTAAGGACGGGGATGTGCTCATGGCTGAGTGTCTCATCCAGCTAGGAGCCGACATCAACAAGAAGACCAAGACCGAGTCGCTCATATACCAGGTGTGTGAGCAGGGCGGGCCTCTGCAGCTTGTGGTGCTGCTTCTCAGCCGAGGGGTCCATGAGCAGCACCTGCGTGGGGCCCTGGGGGCCAGCGTGCGTCGTGGGGACGGCCCTGCGGTCATCCAGCTACTGGGGCGTCTGGGGCTGGACCTGAACAACAATGCCCTCTGTCTGGGGGGGTTCAGGCTGGGTCGGGTGGATGCTGCCTGGCTCAGCCCCCTGCTCGCTGAACGAGGTCGCGCCAACAGTCTACCCTCCAGCACAAGTAAGGGTGCGTGTTTAGCTCGGTACGTGTTATCCTTACAGAGGGGTAAGACGACCcctaccccctccacccccaggTCTCTAGCTGACCCCTGCCTTACCTCTGGGTACATGTCAGACGAGAGTGATGACTCCAGCTTCCTGTCTTTAGAGGACAGTCTGGTCTTCAACGACGATATGGAGAGTGACGGAAGTGATTCACTTTCGTTGGCACTGTCCCCCATGTCCACCAATGATTTGTCAGAGGAGTGGAAGGCAGGGTCACAGAAGAGGAAGAACGGGCGTCGCAGGCACTTTAGCTCCGAGTCCTGTATCCATCCGAAGGGAGTCCAGGGTGAGGTTGAGCTCAACGAGCCACTTCAGAGGAGGTATGGCAGGACAACCCCTAACCAGAAAGGTATTCACTCCCCAGTCTTGAGCTCTGGGTATAACTCCTCCCCTCTGGTCGGGGACAGAGAGTGGATCCGCCTGCTGGACCTATCCGGGAATGAGCTGGACTCTGTGTCGTGTTTGTTGGGCGAGGGTTCTGTCCGACAGCAGCTGGAGCACCTGTATCGACTAGACTTGAGCCAGAACAGCCTATCAGAGTTCCCCTCTGAGCTGTGTGAGAGCTTGAAGAGTCTGACACGTCTGGATCTCCAAGGCAACCAGTTGCAGTCGTTGCCGGCGGAGCTTCTGGCCCTGCCCTCACTGACCATGCTCAACGTGTCACGTAACTGTGTCGGCCCGCTTCTGACCCTTGACCCCGCCATCACCTGCCCGTCGCTACGGCAACTCAACCTGTCCTACAACCACATCACCACCTTCCCCCACCAGCTGGGCCGGGCCATGGAGCGACTGGAGGAGCTGTCCCTAGAGGGGAACAGAATGAGTGAGCTGTGGTCTCCTCTGTATCTTCTGGAGATGAAGCTCCTAGACATCAGTAAGAACAGTGTGGAGAGCATCTCACGTGACTTCCTGTCTGGCTGCCCCAAACTAGAGAACTTCAGTGCTTGTACCAACCATCTCAGTTCGCTGTCACATCTTCCCTCAAAGATAACAACTCTGAAGTTATCACATAACAGTTTCACTACCATTCCTCAAGCCGTTCTGGATCTTCCAAACTTACGGTCCGTGGATATGAGGACCAATGACATCACAGTTTTACCGGGGCCGTGCGCCTGGGCATCGGTCAACCTGCGGGAGCTCATGTTCAGTCAGAACCGCATCGGAGTGCTGGACCTGAGTGGACCTGAAGTTTACAAGTGGGCCAGACTGGAGAAACTACACCTGAGTGACAATAAGCTCACAGAGGTCCCTCCTCAGATCGGCCTGCTGGAGGAGCTGACCTCTCTCGACTTGAGCCGTAATGGCGGCCTGCGCTCCTTCCCTGACGAGATGGGCAAGCTGAGCCGGCTGTGGGACTTGCCACTGGATGGCCTGCGCCTCAGCCTGGATCTCAAGCACATTGGCAACAAGACCAAAGACATAGTCAGGTTCCTCCAGCAGCGTCTGAAGAAAGCCGTTCCGTACTACCGGATGAAGCTGATTGTGGTTGGGAACGCCGACAGTGGTAAGACTGCTCTAATCCGACAGCTGATGAAGCTCAAGCGTTCTCAGTGGCAGATGGAGCGGCCCATCGCTGGGATCGATGTCAGAGATTGGACCATCCGGGACCGGGATAAGAAGAACATGGTGCTCAACGTCTGGGACTTCTCAGGTGGGGAGGAGTTCAGTGGTTCTCACCCCCACTTCCTTACCCCCCGGGCCCTCTACCTGGTTGTGTACGACCTCAGTAAGGGGGCTGCCCAGGTGGACGCGCTCAAACCCTGGCTCTTCAACATCAAGGCGGTGGCCCCCCTGTCACCAGTCATCCTGGTGGGGACACACACAGACGTGAGCGAGGACCTCCAGCTGCAGGCTTGCCTGGATAAGATCCGCCAGGAGCTCCTCAACCACCAAGGCTTCCCTGCTATCCGGGACTACCACATGGTGGCGGTGTGCGAGGACTCGGACTCCATCGGCAGACTCCGCAAGGCTATCGCCAGGGAGGTCGCCAACTTCAAGATCCAAGGGCAGCTGGTGATGGGGCAGCTGGTCCCAGAAAGCTATTTGGAGCTGGAGAGAAGGGTGCTGCTGGAGAGGGCCAGGGTGCCGGGGGAGTTCCCCGTGCTCAGACACCAATACCTGCTACAGCTCATCCAGGAGAGCCAGATACAGCTGGAGGAGGCTGAGCTACCCCACGCTGTTCACTTCCTCAGCGAGGCCGGAGTCCTTCTGCACTTTGACGACCCGGCCCTCCAACTCAGAGAACTCTACTTTATCGACCCACAGTGGCTCTGCAACATCATctcacagaAACTGTCTCTGAAAAGCTCTGGGTTCTGGGAGAATCCCAAAGGCGTAGTCCAGCGCTCTATGGTGGAACGGTTCCTATTTGAGAGTAAGTGTTTCCCCAAGTGCCACCTGACCCAATACTTTAAACTGCTGGAGAAGTTCCAGATCGCCCTGCCCTTCGGAGAGGACCAGCTCCTAGTGCCGAGCAGTCTCTCCAAACACCGGCCAGTAATTGAGATGCCCCACTGTGAAAATTCTGAGGTCATTGTTCGTCTCTATGAGATGCCCTACTTCCCCATGGGCTACTGGTCGAGACAGATCAACCGCCTACTTGAGGTCTCCTCCTACATGCTCTGTGGCAGAGAAAGAGAGATGCGTCCCAACCGTATCTACTGGAGGAGAGGCATCTACCTGAGCTGGTCTCCTGAGGCCTACTGTCTGGTTGAGGCTGCCAACGTAGAGGACAACCCTGCCAGCTTCGTCAAGATCACTGTGCCCTGCTCACGCAAAGGTCGTGTGTTACTGGGTCAGGTAGTGGACCATGTTGACTCTCTCTTGGAGGAGTGGTTCCCTGGTCTCCTCACCACTGATATCCATGGCAACGGAGAGACCCTGCTGAAGAAATGGGCTCTGTACAGCTTCAAGGATGGACAGGAGTGGAGCAAGATACTGCTGGAGGACCTGTTCACTCACATAGATAAAGACTGTCTTTTGGTAAACCCGGAGGACCCTCGCTGCACAGTGCCAATCTCTCAGATTGCTCCAGACCTGATCCTCAGTGACCAGCCTGCTGGAATCATCCTTGACAGCGAGGAGCTTGAGATAGACCTTACAAAGGAGAATCTGCTGGGGGATGGTGGTTTTGGGTCTGTCTATCGAGGCATCTACAAAAATGAAGAGGTGGCAGTGAAGATTTTCAACAAGCATGCCTCTGATCTCTATATACACCGACTACTCCGACAGGAGTTGGTAGTGTTGGGTCGTCTCCACCACCCCAGCCTGGTGGGGCTGCTGGCAGCCGGGGCGGCCCCTCATCTCCTGGTGATGGAGTTAGCCCCCAGAGGATCCCTGGACTCTTTGTTTGAACACGAGAACAGCAGCCTCAACCGCAAGCTCCAGCACAGGATTGCTCTGCAGGTGGCCGACGGGCTCAGGTATCTCCACTCGTCCATGATCATCTACCGAGACCTGAAGCCTCACAACGTGCTGCTGTTCAACCTGAAAACTGACTCCGAGACCATCGCTAAGATCACAGACTACGGCATCGCTCAGTGCTGCTGCAGCATGGGGGTCAGGAGCTCTGAGGGCACCCCAGGTTTCCGGGCGCCAGAGGTTGCCCGGGGCAATGTGATCTACAACCAGCAGGCAGACGTGTTCTCATTCGGCCTGCTGCTATACGACCTGCTGACCTGTGGTGAGCGCATCTCAGATGGCATGAAGTTCCCCAGCGAGTTTGACGAGATCGCTGTGCAGGGCAAGCTGCCAGACCCAGTGAGGCACCACGGCTGCTCCCCCTGGCCAGGCTTCCAAGGCCTAATGAAGGACTGTATGAGGGAGAATCCCCAGGACAGACCCACCTCCACACAGgtgtttgAGAGGCTGAACTCTGGGGAGATGCTGTGTCTGATGAAGGAGCTGGTGGTCAGCAGAGCTTCCAATGCTGAGTGTTTCACGGTGGGCTACAGCAGCGCCAGCAACGGCCCCAGTTCTAACCCAAGGGCCTGGGTGGGAGGGGGCAGCAGCACACGGAGACTGGGCTGTGTCGCGTCTATCGACCTGGAGACTGAGAAAGTCACAACACAGGTGATTGACACGAGTCCTGTCTTATGCCTGGTGACTGTCCAAGTCCCAGACGAAGCCTGTGATTGGCTGGTGGCTGGTACACAATCAGGGGCACTGGTCATGATCAGCACTCAGAACCTGTCCAACTGGCACAACCTGCAGAGTGTCACCGACGCTGTGACATCACTGTTCTTCCACACACAACCTCAGCGCAGTCAAAGAAAGAATTACTTGTTAGTTGGGACAGCAAATGGAATTCTGACGGTTTATGAGGACTCTGCGCTCCAGGTGGAGAATGGCCAGCCAGTCAAGACGTTGCACATCGGGAACGTCAACACCCCAGTGATGTGTCTGGGCCAATCAGGTCACTCCCTGGACAGGACCACGGTGTGGGCCGGCTGTGGGACCAGAATCCTTTCCTTTACCGCCGACTATGGCGTCTGTAAGACCATTGACACTAAACCCAACAGCCTCTTCCAGCAGCATCATGCGGTGAGCTGTGAGCCGTGTGTGTCTCGTATGGTAGTGGAGAAGCATGTGTACCTCAGCAAGGCTGGAGGGCAGAGCGTGGAGGTGTGGAATAAGAAGAGTGAGCGGATGATTGACAGCATTGACTGTGCCAAACTACTCAGACACGACTCCAGCCGGCAACCCAGAAAGGCTAATTCAGAGTTTGAATTTGGAGCGGATACTCCAACCTGGGCGAACATCAAGTCCCTCTTGGTGCAGCAAACCACCACTACCCTGTGGATCGGCACCCGGGGAGGCCACCTCCTCCTGGTAGAGCTGGCCAACCTCCAGCTGCTGCAGGTCATCAGCCCACACTGCCAGTCCATACGCAGCATGGCCTCTGTTTTTATAGAAACACTAAACCGTAAGAATGTGGTCCTGGTTTTGGGAAGAAGACTGTCCCAAGATAAGAATCAATATGACGAGGAGTCTGTACTGATGGTGTGGAACAGTTCTCTGCCTCTGGAGGTCAAGGACCTCAACAAACACtgtgagatgagagaggagatcACAGCCAAGATGAGAGAGCAGCAAAACGACTGAGTCACTGACTGAGCCCACAGCTTGAATACACATGGAAAAGGGATTTCTCTGAAGATTGAAGTAGTGTGTCTTCTGCACACATATAGTAccagtacacacatacagtaccagtacacacacatatagtaccagtacacacatacagtaccagtacacacacatacagtaccagtacacacatacagtaccagtacacacatacagtaccagtacaggGGGAGACGTTACCTCACTGAAATCACAGAGATAAAACTATCTCAATAACTGACATTGTCTGACAGCCATACTTCTCAGGGCACTTTGGACCGTGTCAAAGACCATGAAGAGACCACACGAGTGCACTTGATTTAGGTTACATTGTTTAAGTGCACTTTAATATTTTACTTCTTTCTCCAAACCCAAAAGCCGTCTGGATATCTGCATGCTTTATTTAAGTGCACACTTTCATAATCACCCCAAACTATTGCAAGCACTGACCAGGGGTTGACTGTATACTACAATACCTAAATGTAAGTAAAATGCCTTTGAATAAAGAATATTTTAATCTCAGACCGTTTATTATTTTCAATTGAAACGCTCCTGCCAAATGTTATTACAAATTGTATGTCTGAAAAAACTCTAAAAGGGATGCTTCATTTGTGTTGTTTTCATTATAAATGTGTGTTGTTTACCTGTTATCACCATTATAAAATGAAACTGAAGACAACTGGAAAAAAAGCCAAAGGAAATAAATTCTCACTTCTCAAGGGCCATATTTGATGATGTATTCAATACATGCGTTTGTTTACCAAATGACCCCATTCCTTGTCTTTTGTCAAGATGCGAGATGTTAAGTCATGTCATGACTGTTGTACTTGTAATGTATGATGTAGCATCTCAGTAAATTCTGTTTGACTTTTAAAcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230843 lncRNA downstream 7073 91771302 ~ 91773128 (-) True G203975
TU230680 lncRNA downstream 279644 91464310 ~ 91500557 (-) True G203829
TU230630 lncRNA downstream 381719 91398064 ~ 91398482 (-) True G203780
TU229955 lncRNA downstream 541387 91238517 ~ 91238814 (-) True G203163
TU229954 lncRNA downstream 541764 91238230 ~ 91238437 (-) True G203162
TU230924 lncRNA upstream 14137 91851317 ~ 91852018 (-) True G204050
TU230926 lncRNA upstream 16115 91853295 ~ 91853597 (-) True G204052
TU230979 lncRNA upstream 64777 91901957 ~ 91905169 (-) False G204096
TU230980 lncRNA upstream 64777 91901957 ~ 91905169 (-) True G204096
TU230967 lncRNA upstream 95965 91933145 ~ 91935174 (-) True G204088
XM_021580318.2 mRNA downstream 39372 91691853 ~ 91740829 (-) True lrriq1
XM_021576768.2 mRNA downstream 106471 91668397 ~ 91673730 (-) True alx1
XR_002469996.2 mRNA downstream 155997 91606745 ~ 91624204 (-) True LOC110499699
XM_036958964.1 mRNA downstream 198895 91560700 ~ 91581306 (-) True nts
XM_021576731.2 mRNA downstream 525360 91239744 ~ 91254841 (-) True eif4g2b
XM_021576828.2 mRNA upstream 184575 92021755 ~ 92027773 (-) True LOC110499762
XM_036959104.1 mRNA upstream 316204 92153384 ~ 92190013 (-) False LOC110499841
XM_021576906.2 mRNA upstream 316204 92153384 ~ 92190372 (-) False LOC110499841
XM_036959106.1 mRNA upstream 316204 92153384 ~ 92190372 (-) True LOC110499841
XM_036934765.1 mRNA upstream 360156 92197336 ~ 92202031 (-) True LOC110533906
TU230773 other downstream 189152 91589212 ~ 91591049 (-) True G203915
TU228979 other downstream 1338776 90377557 ~ 90441425 (-) True G202279
TU228163 other downstream 2170311 89606837 ~ 89609890 (-) True LOC110499346
TU225173 other downstream 4453732 87322139 ~ 87326469 (-) True G198912
TU224521 other downstream 4876245 86903036 ~ 86903956 (-) True G198342
TU231426 other upstream 560880 92398060 ~ 92439601 (-) False LOC110499897
TU232213 other upstream 1124864 92962044 ~ 92962934 (-) True G205192
TU234006 other upstream 2475244 94312424 ~ 94312774 (-) False G206742
TU234005 other upstream 2475347 94312527 ~ 94312774 (-) True G206742
TU234008 other upstream 2476210 94313390 ~ 94313918 (-) True G206744

Expression Profile