RNA id: XR_005038802.1


Basic Information

Item Value
RNA id XR_005038802.1
length 7424
RNA type mRNA
GC content 0.56
exon number 47
gene id lrrk2
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 91780201 ~ 91837180 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGCTTTTGGAGGATTGTAACTATAGATACATGCATTTAAAGTCGTCATTTATCGAACAACATATCAAATACAATGGTTAACAAGGAGGAACTGGAAGAAAGATTGAAAAAACTATTAGTGAGATtgaaaaacctacaggaggggaAGCAGTTGAGTACCCTGGTTCAGATCATCCAAGACCTTCTTTTCCTGGCGCACACTGATGACTGTGCAGCAGAGCTATTTGAGGATAAAGATGTCCATGTGCCTCTTATGGTGGTGTTGTCGACTTACAGCAACAGCAGAGGGGTGCAACAGGTGGGATGGTCGTTGCTGTGTCGGCTGATGGAGATATGTCCTTCCACCTTGGACTCACTGGTCAGGCCCCTGGGAGCAGGGAAAGACTGGGAGGTACTTGGAGTGCATCAGCAGATCCTTAAGGTGTTGTCCCAGCACAGTGGAGACTGCAGAGTGATGATGGTTGGGCTTAGGGCACTGGCTCTGCTCCTCAGATCAGATGTGATCGTGTTGTTGATTcgggatgaggaagaggatgtgTTTAGTTTGATCGTTGAGGGGATGAAGACTTTCCCCTCCAGTGAGGAGGTTCAGATTCAGGGCTGCCGTGGTCTCCAGCTGCTACTGGACAGAGTGTCTGATGACGACCTGGTAGAGTTTCTGGAGAACCAGGACCACAGTGTGGTTCTAGGTGCTCTCCACCATTTTCACGACAGTGAAGACCTGTTTCTGCAGGCCATGAAGGTACTCCTTCCTCTAGCAGGTCCTGCCAGTAATGTGGAGATCCTGATGTCGGGGGGAGAGAGGTGTTACAGTGTGGTGGCTGGAGCCATGGAGTCGTTCCCAGAGGTCGAGGCACTGCAGGAGGTCGGCTGCTGTCTGTTCAGGAAGTTTACATcagAAAGATATTGTAGTATTCTGGTGCTGAATGGGGTGCATAGGGTCACTGTAAGAGCCTGTTTGACTTACCCTGAGAACGCCACTCTACAAGCTGCTGCACTCTCCTGTCTGGCTGCCCtcaCTGAAACCATAGTGCAGAGCAAAGCTGTGGtgaatgaagggatggaggagggagaggcggaggagaacagagggaaggaggaggaggtggatgaTGTGGGGTTGTGCTGGATGGAGGCCTGCTGCAGAGCTCTGGAGGTCCATGCTGCTGATTCCACAGTGCAGGAAGCTGCATGTTGGGCCATACACAGCCTGCTATTGCATGGCAGCGAGTCATGGCACCATTCCACAGAAGAGCAAGACGGAAGGACACCAGTCCACAGACAGATCATGGCTGCCATgctgctccactcctcctcccctgGGGTGTTCCAGGCTGCTGCCAGCGCCATGGGAACACTCATCACCTACAATAGTAAAATGCGATCTCTGTTGTTGTCCAACGGCCTCCATGTGAACGTGGTGGAGATGATGAAGAGACATCTGTCCTCTCCAGAGGTCTCCGCAGGTGGATGTAAACTGCTCCACCTGCTCTTCAAGGGAAGGATGGCCAGTCTGGATGAACTGGACATGGCCATGGGTCAGATCGTTAGGACCATGAAGGTCCATAACTTCATACCTGAGGTCCAGCTGGAAGCTCTGAGGGCCAGCCTGGCCTTCCTCTGTCCTGATAGAAGTTTGCGGGTGTCTGATCACGGTGTGTCTGTGGCTGATCCAGACACAGTGGACGTGTCTCTGAGGGTGCAGAAGAACCAGAGTGTGGTGGAGGGGGCCCACACAGTCTACCTAGAGACACTCAACAGGTTTATTAGCAGTGCAGCCATCCAGGAGTGTGGCCTGCGTGTTCTGTCTGCGCTGGCTGACTGCTCTGGTGCTGTAGACCTGCTCTGTCAACAGGGGGCAATAGACACTGTGCTGCACACACTACAGATGTTCCCTAGGGAACGAGAAATACACTACTGGGGTCTAAACCTCCTCTACTGCCTTGTGTCTAAGAAGAAGCTGTCCAGGATGATAGTTCCCGTCCTGGCGTCTGTTCTCGTTACCAGTCTCCTGCAGTACAGGGAGGACACAGAGATGCTGTTAAAGGGGTTCCAGGTGGCCCTCCGAATGCTGGATGCCTGCTCAGGGGCAGCAGGGGAGCTGCAGAGGGAAGGCTTTGACAGAGAGATCTTCCTCCAGCTCAAAGAAGGACCACCTGACCGGTGCAGCTACCCGctCTCCCAGCTGCGTAAGGCTGCATGCCTGGCCCTGTCCAAGATGTGTGGCGATGCAGAGCTGAGGTACAGTATGCTGGAGAAGGCCTGTAAGGACGGGGATGTGCTCATGGCTGAGTGTCTCATCCAGCTAGGAGCCGACATCAACAAGAAGACCAAGACCGAGTCGCTCATATACCAGGTGTGTGAGCAGGGCGGGCCTCTGCAGCTTGTGGTGCTGCTTCTCAGCCGAGGGGTCCATGAGCAGCACCTGCGTGGGGCCCTGGGGGCCAGCGTGCGTCGTGGGGACGGCCCTGCGGTCATCCAGCTACTGGGGCGTCTGGGGCTGGACCTGAACAACAATGCCCTCTGTCTGGGGGGGTTCAGGCTGGGTCGGGTGGATGCTGCCTGGCTCAGCCCCCTGCTCGCTGAACGAGGTCGCGCCAACAGTCTACCCTCCAGCACAAGTAAGGGTGCGTGTTTAGCTCGGTACGTGTTATCCTTACAGAGGGGTAAGACGACCcctaccccctccacccccaggTCTCTAGCTGACCCCTGCCTTACCTCTGGGTACATGTCAGACGAGAGTGATGACTCCAGCTTCCTGTCTTTAGAGGACAGTCTGGTCTTCAACGACGATATGGAGAGTGACGGAAGTGATTCACTTTCGTTGGCACTGTCCCCCATGTCCACCAATGATTTGTCAGAGGAGTGGAAGGCAGGGTCACAGAAGAGGAAGAACGGGCGTCGCAGGCACTTTAGCTCCGAGTCCTGTATCCATCCGAAGGGAGTCCAGGGTGAGGTTGAGCTCAACGAGCCACTTCAGAGGAGGTATGGCAGGACAACCCCTAACCAGAAAGGTATTCACTCCCCAGTCTTGAGCTCTGGGTATAACTCCTCCCCTCTGGTCGGGGACAGAGAGTGGATCCGCCTGCTGGACCTATCCGGGAATGAGCTGGACTCTGTGTCGTGTTTGTTGGGCGAGGGTTCTGTCCGACAGCAGCTGGAGCACCTGTATCGACTAGACTTGAGCCAGAACAGCCTATCAGAGTTCCCCTCTGAGCTGTGTGAGAGCTTGAAGAGTCTGACACGTCTGGATCTCCAAGGCAACCAGTTGCAGTCGTTGCCGGCGGAGCTTCTGGCCCTGCCCTCACTGACCATGCTCAACGTGTCACGTAACTGTGTCGGCCCGCTTCTGACCCTTGACCCCGCCATCACCTGCCCGTCGCTACGGCAACTCAACCTGTCCTACAACCACATCACCACCTTCCCCCACCAGCTGGGCCGGGCCATGGAGCGACTGGAGGAGCTGTCCCTAGAGGGGAACAGAATGAGTGAGCTGTGGTCTCCTCTGTATCTTCTGGAGATGAAGCTCCTAGACATCAGTAAGAACAGTGTGGAGAGCATCTCACGTGACTTCCTGTCTGGCTGCCCCAAACTAGAGAACTTCAGTGCTTGTACCAACCATCTCAGTTCGCTGTCACATCTTCCCTCAAAGATAACAACTCTGAAGTTATCACATAACAGTTTCACTACCATTCCTCAAGCCGTTCTGGATCTTCCAAACTTACGGTCCGTGGATATGAGGACCAATGACATCACAGTTTTACCGGGGCCGTGCGCCTGGGCATCGGTCAACCTGCGGGAGCTCATGTTCAGTCAGAACCGCATCGGAGTGCTGGACCTGAGTGGACCTGAAGTTTACAAGTGGGCCAGACTGGAGAAACTACACCTGAGTGACAATAAGCTCACAGAGGTCCCTCCTCAGATCGGCCTGCTGGAGGAGCTGACCTCTCTCGACTTGAGCCGTAATGGCGGCCTGCGCTCCTTCCCTGACGAGATGGGCAAGCTGAGCCGGCTGTGGGACTTGCCACTGGATGGCCTGCGCCTCAGCCTGGATCTCAAGCACATTGGCAACAAGACCAAAGACATAGTCAGGTTCCTCCAGCAGCGTCTGAAGAAAGCCGTTCCGTACTACCGGATGAAGCTGATTGTGGTTGGGAACGCCGACAGTGGTAAGACTGCTCTAATCCGACAGCTGATGAAGCTCAAGCGTTCTCAGTGGCAGATGGAGCGGCCCATCGCTGGGATCGATGTCAGAGATTGGACCATCCGGGACCGGGATAAGAAGAACATGGTGCTCAACGTCTGGGACTTCTCAGGTGGGGAGGAGTTCAGTGGTTCTCACCCCCACTTCCTTACCCCCCGGGCCCTCTACCTGGTTGTGTACGACCTCAGTAAGGGGGCTGCCCAGGTGGACGCGCTCAAACCCTGGCTCTTCAACATCAAGGCGGTGGCCCCCCTGTCACCAGTCATCCTGGTGGGGACACACACAGACGTGAGCGAGGACCTCCAGCTGCAGGCTTGCCTGGATAAGATCCGCCAGGAGCTCCTCAACCACCAAGGCTTCCCTGCTATCCGGGACTACCACATGGTGGCGGTGTGCGAGGACTCGGACTCCATCGGCAGACTCCGCAAGGCTATCGCCAGGGAGGTCGCCAACTTCAAGATCCAAGGGCAGCTGGTGATGGGGCAGCTGGTCCCAGAAAGCTATTTGGAGCTGGAGAGAAGGGTGCTGCTGGAGAGGGCCAGGGTGCCGGGGGAGTTCCCCGTGCTCAGACACCAATACCTGCTACAGCTCATCCAGGAGAGCCAGATACAGCTGGAGGAGGCTGAGCTACCCCACGCTGTTCACTTCCTCAGCGAGGCCGGAGTCCTTCTGCACTTTGACGACCCGGCCCTCCAACTCAGAGAACTCTACTTTATCGACCCACAGTGGCTCTGCAACATCATctcacagaAACTGTCTCTGAAAAGCTCTGGGTTCTGGGAGAATCCCAAAGGCGTAGTCCAGCGCTCTATGGTGGAACGGTTCCTATTTGAGAGTAAGTGTTTCCCCAAGTGCCACCTGACCCAATACTTTAAACTGCTGGAGAAGTTCCAGATCGCCCTGCCCTTCGGAGAGGACCAGCTCCTAGTGCCGAGCAGTCTCTCCAAACACCGGCCAGTAATTGAGATGCCCCACTGTGAAAATTCTGAGGTCATTGTTCGTCTCTATGAGATGCCCTACTTCCCCATGGGCTACTGGTCGAGACAGATCAACCGCCTACTTGAGGTCTCCTCCTACATGCTCTGTGGCAGAGAAAGAGAGATGCGTCCCAACCGTATCTACTGGAGGAGAGGCATCTACCTGAGCTGGTCTCCTGAGGCCTACTGTCTGGTTGAGGCTGCCAACGTAGAGGACAACCCTGCCAGCTTCGTCAAGATCACTGTGCCCTGCTCACGCAAAGGTCGTGTGTTACTGGGTCAGGTAGTGGACCATGTTGACTCTCTCTTGGAGGAGTGGTTCCCTGGTCTCCTCACCACTGATATCCATGGCAACGGAGAGACCCTGCTGAAGAAATGGGCTCTGTACAGCTTCAAGGATGGACAGGAGTGGAGCAAGATACTGCTGGAGGACCTGTTCACTCACATAGATAAAGACTGTCTTTTGGTAAACCCGGAGGACCCTCGCTGCACAGTGCCAATCTCTCAGATTGCTCCAGACCTGATCCTCAGTGACCAGCCTGCTGGAATCATCCTTGACAGCGAGGAGCTTGAGATAGACCTTACAAAGGAGAATCTGCTGGGGGATGGTGGTTTTGGGTCTGTCTATCGAGGCATCTACAAAAATGAAGAGGTGGCAGTGAAGATTTTCAACAAGCATGCCTCTGATCTCTATATACACCGACTACTCCGACAGGAGTTGGTAGTGTTGGGTCGTCTCCACCACCCCAGCCTGGTGGGGCTGCTGGCAGCCGGGGCGGCCCCTCATCTCCTGGTGATGGAGTTAGCCCCCAGAGGATCCCTGGACTCTTTGTTTGAACACGAGAACAGCAGCCTCAACCGCAAGCTCCAGCACAGGATTGCTCTGCAGGTGGCCGACGGGCTCAGGTATCTCCACTCGTCCATGATCATCTACCGAGACCTGAAGCCTCACAACGTGCTGCTGTTCAACCTGAAAACTGACTCCGAGACCATCGCTAAGATCACAGACTACGGCATCGCTCAGTGCTGCTGCAGCATGGGGGTCAGGAGCTCTGAGGGCACCCCAGGTTTCCGGGCGCCAGAGGTTGCCCGGGGCAATGTGATCTACAACCAGCAGGCAGACGTGTTCTCATTCGGCCTGCTGCTATACGACCTGCTGACCTGTGGTGAGCGCATCTCAGATGGCATGAAGTTCCCCAGCGAGTTTGACGAGATCGCTGTGCAGGGCAAGCTGCCAGACCCAGTGAGGCACCACGGCTGCTCCCCCTGGCCAGGCTTCCAAGGCCTAATGAAGGACTGTATGAGGGAGAATCCCCAGGACAGACCCACCTCCACACAGgtgtttgAGAGGCTGAACTCTGGGGAGATGCTGTGTCTGATGAAGGAGCTGGTGGTCAGCAGAGCTTCCAATGCTGAGTGTTTCACGGTGGGCTACAGCAGCGCCAGCAACGGCCCCAGTTCTAACCCAAGGGCCTGGGTGGGAGGGGGCAGCAGCACACGGAGACTGGGCTGTGTCGCGTCTATCGACCTGGAGACTGAGAAAGTCACAACACAGGTGATTGACACGAGTCCTGTCTTATGCCTGGTGACTGTCCAAGTCCCAGACGAAGCCTGTGATTGGCTGGTGGCTGGTACACAATCAGGGGCACTGGTCATGATCAGCACTCAGAACCTGTCCAACTGGCACAACCTGCAGAGTGTCACCGACGCTGTGACATCACTGTTCTTCCACACACAACCTCAGCGCAGGTGGAGAATGGCCAGCCAGTCAAGACGTTGCACATCGGGAACGTCAACACCCCAGTGATGTGTCTGGGCCAATCAGGTCACTCCCTGGACAGGACCACGGTGTGGGCCGGCTGTGGGACCAGAATCCTTTCCTTTACCGCCGACTATGGCGTCTGTAAGACCATTGACACTAAACCCAACAGCCTCTTCCAGCAGCATCATGCGGTGAGCTGTGAGCCGTGTGTGTCTCGTATGGTAGTGGAGAAGCATGTGTACCTCAGCAAGGCTGGAGGGCAGAGCGTGGAGGTGTGGAATAAGAAGAGTGAGCGGATGATTGACAGCATTGACTGTGCCAAACTACTCAGACACGACTCCAGCCGGCAACCCAGAAAGGCTAATTCAGAGTTTGAATTTGGAGCGGATACTCCAACCTGGGCGAACATCAAGTCCCTCTTGGTGCAGCAAACCACCACTACCCTGTGGATCGGCACCCGGGGAGGCCACCTCCTCCT

Function

GO: NA

KEGG:

id description
K08844 LRRK2; leucine-rich repeat kinase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230843 lncRNA downstream 9049 91771302 ~ 91773128 (-) True G203975
TU230680 lncRNA downstream 281620 91464310 ~ 91500557 (-) True G203829
TU230630 lncRNA downstream 383695 91398064 ~ 91398482 (-) True G203780
TU229955 lncRNA downstream 543363 91238517 ~ 91238814 (-) True G203163
TU229954 lncRNA downstream 543740 91238230 ~ 91238437 (-) True G203162
TU230924 lncRNA upstream 14290 91851317 ~ 91852018 (-) True G204050
TU230926 lncRNA upstream 16268 91853295 ~ 91853597 (-) True G204052
TU230979 lncRNA upstream 64930 91901957 ~ 91905169 (-) False G204096
TU230980 lncRNA upstream 64930 91901957 ~ 91905169 (-) True G204096
TU230967 lncRNA upstream 96118 91933145 ~ 91935174 (-) True G204088
XM_021580318.2 mRNA downstream 41348 91691853 ~ 91740829 (-) True lrriq1
XM_021576768.2 mRNA downstream 108447 91668397 ~ 91673730 (-) True alx1
XR_002469996.2 mRNA downstream 157973 91606745 ~ 91624204 (-) True LOC110499699
XM_036958964.1 mRNA downstream 200871 91560700 ~ 91581306 (-) True nts
XM_021576731.2 mRNA downstream 527336 91239744 ~ 91254841 (-) True eif4g2b
XM_021576828.2 mRNA upstream 184728 92021755 ~ 92027773 (-) True LOC110499762
XM_036959104.1 mRNA upstream 316357 92153384 ~ 92190013 (-) False LOC110499841
XM_021576906.2 mRNA upstream 316357 92153384 ~ 92190372 (-) False LOC110499841
XM_036959106.1 mRNA upstream 316357 92153384 ~ 92190372 (-) True LOC110499841
XM_036934765.1 mRNA upstream 360309 92197336 ~ 92202031 (-) True LOC110533906
TU230773 other downstream 191128 91589212 ~ 91591049 (-) True G203915
TU228979 other downstream 1340752 90377557 ~ 90441425 (-) True G202279
TU228163 other downstream 2172287 89606837 ~ 89609890 (-) True LOC110499346
TU225173 other downstream 4455708 87322139 ~ 87326469 (-) True G198912
TU224521 other downstream 4878221 86903036 ~ 86903956 (-) True G198342
TU231426 other upstream 561033 92398060 ~ 92439601 (-) False LOC110499897
TU232213 other upstream 1125017 92962044 ~ 92962934 (-) True G205192
TU234006 other upstream 2475397 94312424 ~ 94312774 (-) False G206742
TU234005 other upstream 2475500 94312527 ~ 94312774 (-) True G206742
TU234008 other upstream 2476363 94313390 ~ 94313918 (-) True G206744

Expression Profile