RNA id: XM_021576837.2


Basic Information

Item Value
RNA id XM_021576837.2
length 4090
RNA type mRNA
GC content 0.53
exon number 25
gene id smc1b
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 92028434 ~ 92049230 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACTCCGTGGCGCTCTTCTGAGGAAAAACTTGACAAAAACTGTTTTTGAAGATCTAGCTGCCCAAAATGGGTTTTCTAAAGCAGTTGGATGTGGATAATTTTAAGTCTTGGCGAGGGAAGCAAGTAATTGGACCTTTTAAAAGGTTTAACTGTATTATTGGCACAAATGGATCCGGTAAGTCGAACGTGATGGATGCCCTGAGCTTCGTGATGGGGGAACGGGCAGCGACTCTCCGCGTGAAGCACACCAGGGACCTCATCCACGGAGCCCACATTGGCAAGCCGGTGTCCACCACGGCCAGCGTCACCATGCGCTACTGCGACGACAACGGAGAGGAGCTCAACTTCTGTAGGAGCATATCGGGGGACTCCTCTGAGTATCGCATCAATGGCAGACAAATTACCCTTGCCAAGTACACAGAGGAACTGGAGAAGATAGGCATTGTGACTAAAGCTAGAAACTGTCTGGTATTCCAgGGGGCGGTGGAGTCCATCGCCATGAAGAACCCCAAGGAGCGGACCAAGATGTTTGAGCGCATCAGCCAGTCTCTGGAGCTGTCTGATGACTATGACAGGAAGAAGGAGGCTTTGCAGAAGGCTAAAGAAGACACGCAGTTCCACTTCAACAAGAAGAGGACAGCCGCCGCAGAGAAGAAGCAGGTCTCCTCAGAGAAAGTGGAGgCCCAGAAGTACCAGGAGTTGGTGGACGACCTGAACCAGGGGAGGCTGCAGCTAAACCTGTTCCAGCTGTACCACAACCAGCAGGGCCTGAGTGCCCTGTCAAAGACCCTGAGGAAGAGACAGGAGGCTGTGGCCGGTCAGAAGACAGGACTGAATGGGTGGGAGCAGAGCGTCAAGGCCCAGAAGAAAGAACATGGACGCTTTACCAGAGAGCTGCAGCAGATTGAGAAGGAGATCCGtgGGCAGGAGCAGACCCTGTCCCTGCGTCGGTCCCAGTACATCAAGGCCAAGGTGAATACATCCCACCACCTAAAGAAGGTAGATGATACCCGTGGGGCCCTGGAGAAGAGCCAGAGGATGGGTGCCAAGAAAGAGGAGGAGCTGGCTGAGTTCCATCAGGAGCTCCAGGAGCTGGAGAGGGCCTGGAGGGACTATGAGAGACATGCCCAGGAGGAGTTGACCAACCGGAAGGCTGACATACAGctggaggaggaacagTTGGAGCGCTATAAGGAGCTGAAGGAGCTGGCCAGGAAGCAGGGGGCCCTCCTGTCCCAGCAGGCTAAGAAGATGCACTGGGAGGTCAAGGCTGACCACCAGAAAATCGAGTTTGACCAGCGGAGGAAGAAAGAAGTGGAGGTAAGCATTAAGCACAGCCAGACTCAGCTGGGGGACTTCACCAGGAGAGCAGATAAACTGGAAGAGTACACCAACACCTGCAAGAGCTCTCTGGAGGAGTCTCGTCAGCAGGAGGAGGTGCTGTCTGCGGAACtgcagagagggagggtgaggggggaggaggtgaaCCAGGAGTTAGGGGAGGTACTGGGAGAGCTGCAGAACGCCAGGCTGGACAGCCAGGAGAGTAAGAGGCAGCAGCAACGCAACGAGGTCCTGGAAAACCTCCTCAGACTCTACCCTGACACACTGTTTGGTCGTCTGGTGGACCTGTGCAGCCCCATCCATAAGAAGTACCAGCTGGCCGTCACCAAGGTGTTTGGACGCTACATGAACGCCATAGTAGTGTCGTCAGAGAAGGTGGCTCGGGACTGCATCCGCTTTGTCAAAGAGGAGAGGGCCGAACCAGAAACCTTCTTACCCATAGATTACCTGGACGTGAGCCCTCTGAATGAGCGGCTGCGTGGGGTGCGTGGAGCTAAGATGATGGTGGACGTGGTGCAGTGTTCTCCTACCGCTCCTCAGCTGAAGAAAGTCATCCAGTTTGTGTGTGGCAACGCTCTTGTCTGTGAGACGCTCAAAGAGGCCAGAGCCATCGCCTTCGACGGGCCTGAGCGACTCAAGACGGTGGCTCTGGACGGTACCATGTTCTCCAAGTCAGGGGTGATCTCTGGGGGCTCCAGCTACCTGCGGAGCAAGGCCCGGCGCTGGGACGAGAAGGACATGACCAAGCTGAAGGAGCTCAAAGAACAGCTGACTGCAGAGCTACGTGGTCTGGTGAAGCTGAAGCGTAAGGAGCCTGAGCTGAAACAGATCCAGTCTCAGGCTCAGGGGGTTCAGACCCGTCTGAAGTACTCCCACACTGAACTGGACACCCTCCGCAAGAAGAGCATTCCCAACTGCCACGCGGAGATGTCTCGCCTGGAGGCTGAGCTGGCCAACGTGGAGTCTCAGCTGGAGATGCAGAAAGAGAACAGGGAGATCAAGGAGCTGGAGATGAAGAAGCTCCAAGACAGGATCAACCAGATGGAGGACGTGGTGTTCTCAGACTTCTGTGCTGAGATAGGAGTGGCCAACATCAGGGAGTATGAACAGGAGCATCTCAAACAGCAGCAGGATGTAGACAGGAAACGGTTGGAGTTTGAGTCTCAGCGGACCTGTCTGAAGGCCCAGTTGGAGTATGAACAGGGTCAGCTGGAGCAGCAGAGGAAGAAGATGAAGAAAATAGAGGAGACCATCGCCTTGGAGCAGTGCAGAGTGGAAGAACAGAAGCAGgaggaggagaagctgctggtggtgatggaagAGAGTCAATCTAAAGTGTTGGATCTGAAGAATCATCTGCTGGAGAAGAGGACCCAGGCTTCTGACTCTAAGGCCCAGGTGGACCAAACGATGAAGAGCCTTCAGGAGAGCTCCAGAGAGCAGGTGAAGCTGCAAAGGGAGGTAATCTCAGCTGAGACAGCCCTGGAGCAGTTGAGGATCTGGAAACACAATCTGCTGCTAGGTTGTAAGATCCAGGGCCTGCCCATCACGCTGCTGTCTGGCAGCTTGGACGAGATCAGTGAGGTGCAGCTGGACTCAGAGTCACTCACAGAGAGCACCTGCACCACTATGGACATCTACGAGAGAGAGGCGCTGATGGTCATCGACTACTCTGGCCTGGGAGCTGAGCTGAAGGATCTTGCAGGGGAGGAGGTGGACCCCCAGGTAGAGCGTCTTAAGGAGACAGTGTCCTCTCTAGAGGGGGTCCTACAGCGCTCCACAGCCCCCAACCTTAAAGCCCTGGAGAAAATGAGGGTGGTCAAGGACAAATTCCAGGGGGTGGTGGACGCGTTtgatgccagcagcaaggcagcCAGAAGGAGTAACCAGGAGTTTGAGCAGGTTAAAGCCAAACGCTTCAGACTCTTCAGTCAGTGCTTTGAACACGTCTCTGTCGTCATCGACCAGATCTACAAACAACTGTGCAGGAACACCAGTGCTCAGGCCATTCTGAGTGCTGAGAACCCAGATGAGCCCTACCTGGATGGCATCAATTACAACTGTATTGCTCCTGGGAAACGCTTCATGGCCATGGACAACCTGTCTGGAGGAGAGAAGGCCATCGCTGCCCTGGCTCTGGTGTTCGCAATACACAGCTTCCGTCCAGCTCCGTTCTTTGTCCTGGATGAGGTTGATGCAGCCCTGGACAACACCAATATTGGCAAAGTGACCAGCTTTATCAGGGAGCAGTCGAGAGAGAGCCTCCAGATCATCGTCATCTCTCTGAAGGAGGAGTTCTACTCTAGAGCTGACGCTCTGCTGGGGGTCTACCCTGAGtTTAACGAGTGCATGTTCAGCCGCATGCTGACGCTGGACCTAAGTCCCTATCCCCTGAACGAAGAGAacggaacagagagagagaaggagatgtaaagaaagaaagaacgaacAATCAAATATATACTTTATTGGCCTGATGTGATAGACCCTGACAGCTGATTTCCTGTTTCTCTTGGGATAGTATTAAACCAATCTTCAATTGATTGCCAAAAGCATTCACCTAAAATGTTTGTTTATTAATGTTAATATATTGCTTATTGTTACGTTGATTTTTATTCCGGAGGTTTGAGGATGTTGTACTCCCTCTCAATACTTTTCTATCATTGTTTAGCTTGAAGCATTTTAATATACCAGGGTTCGATTTCACTGTTTTACTTTATATTTAATATAAATCGTTTCCTCTtta

Function

GO:

id name namespace
GO:0006310 DNA recombination biological_process
GO:0007064 mitotic sister chromatid cohesion biological_process
GO:0006281 DNA repair biological_process
GO:0008278 cohesin complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K06636 SMC1; structural maintenance of chromosome 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230461 lncRNA upstream 34730 91990872 ~ 91993704 (+) True G203629
TU230387 lncRNA upstream 108615 91918870 ~ 91919819 (+) True G203561
TU230406 lncRNA upstream 166471 91861393 ~ 91861963 (+) True G203579
TU230385 lncRNA upstream 174857 91853213 ~ 91853577 (+) True G203559
TU230361 lncRNA upstream 204638 91822319 ~ 91823796 (+) True G203547
TU230515 lncRNA downstream 16030 92065260 ~ 92065481 (+) True G203671
TU230518 lncRNA downstream 25398 92074628 ~ 92074860 (+) True G203674
TU230523 lncRNA downstream 29492 92078722 ~ 92078933 (+) True G203679
TU230542 lncRNA downstream 50127 92099357 ~ 92099781 (+) False G203697
TU230544 lncRNA downstream 50127 92099357 ~ 92099781 (+) False G203697
XM_036959047.1 mRNA upstream 20367 91937152 ~ 92008067 (+) True LOC110502371
XM_036959026.1 mRNA upstream 95080 91853852 ~ 91933354 (+) False LOC110502363
LOC110502379 mRNA downstream 8332 92057562 ~ 92063708 (+) True LOC110502379
XM_021576854.2 mRNA downstream 16368 92065598 ~ 92072317 (+) True borcs5
XM_021576866.2 mRNA downstream 37084 92086314 ~ 92116411 (+) False LOC110499798
XM_021576873.2 mRNA downstream 61270 92110500 ~ 92116411 (+) True LOC110499798
XM_021576886.2 mRNA downstream 73830 92123060 ~ 92129748 (+) False LOC110499816
TU230483 other upstream 3692 92021755 ~ 92024742 (+) True G203646
TU230367 other upstream 181034 91826849 ~ 91847400 (+) True G203551
TU230248 other upstream 356535 91668836 ~ 91671899 (+) True G203438
TU230224 other upstream 404141 91622001 ~ 91624293 (+) True G203414
TU230045 other upstream 489061 91366337 ~ 91539373 (+) True mgat4c
TU231132 other downstream 108045 92157275 ~ 92159903 (+) True G204240
TU231530 other downstream 632116 92681346 ~ 92682355 (+) False G204593
TU231531 other downstream 632116 92681346 ~ 92682313 (+) True G204593
TU232035 other downstream 788194 92837424 ~ 92838127 (+) False LOC110499942
TU232439 other downstream 1322163 93371393 ~ 93388550 (+) False G205404

Expression Profile