RNA id: XM_021576873.2


Basic Information

Item Value
RNA id XM_021576873.2
length 2054
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC110499798
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 92086314 ~ 92116411 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATTATTTGGCGAAATGTCAATATATTTTTATAGTTTTATCCAAAACTTTTTTATTgtttacaatttttatttttatgaaattcactgaggaggatggtcctcccattcctcctcagaggagcctccactggaatgtttagtgttagagaaaatgtgGATATTATTTAAATCTCTTTAGGTCAAAATGTTTCACAGAGCtctagcttggcttcctgaactcgttAGGAACTCGCCTCCCACATCAGTCTATGACAAACAGAAAGTGtttttttgtttaaaatctatgaaTTATTTTAGATGAATGGCTATAAATCTCTGAATGTGCTACAATGTAACGATGGTATTCTTTGTCAGTGGCTGAGCTGTAGGAGCCAAGAGTTGATGGACAGTCGGAAGAGCGAATGAAATGTGACTGTCACCATCATGAGGCTGGTGTGGAAGTCCCTGGACAAGATGAGGTGTTTCCGTAAACGCTCCACCATCCCCTTTCTGGGGGTCCTGATCACCTGTCTCCTCTTCTTCAATCTCTACATGGAGGATGGATACATGATGGAGGCGGGTAAAAGACCTCTGAGAGAGACATCAATGCATCCTTCAAACACTGAGAGATATGTTCACACCTTCAGAGACCTCACTAATTTCTCTGGAACCATAAACGTCACATATCGTTACCTCGCTGGGACCCCACTGCCCCGAAAGAAATATCTAACCATTGGATTGTCATCCGTGAAAAGAAAAAGAGGAAATTACCTCATGGAGACGATCAAATCTATTTTTGACCAGTCCAGTTATGAGGAGCTGAAAGAGATTGTGGTGGTGGTCCACCTGGCAGACTTTGACCTGGCCTGGTGTGAAAACCTGGTGCAGGACATCTCCAGGAAGTTTGCCCACCACATCATCGCTGGGCATCTCCTGGTGATCCATGCCCCTGAGGAGTACTATCCATCACTGGATGGGCTAAAAAGGAACTACAATGACCCAGAGGACAGGGTACGATTCCGCTCCAAGCAGAACGTGGATTATGCCTTTCTCCTCAACTTCTGCACCAACCTCTCTGATTTCTACATGATGCTGGAGGATGATGTGCGCTGCTCACGGAACTTTCTGACATCCCTGAAGAAGGTGGTCACCTCCAGGGAAGGCTCCTACTGGGTGATGCTGGAGTTCTCCAAGCTTGGCTACATAGGGAAGCTCTACCACTCAAGAGACCTGCCACGCCTGGCCCACTTCTTGCTCATGTTCTACCAGGAGATGCCCTGTGACTGGCTCCTCATTCACTTCCGGGACCTGCTTGCCCAGAAAGACGTGATCCGCTTCAAGCCCTCCTTGTTCCAGCACATGGGCTACTACTCCTCATATAAAGGGGCAGAGAACAAGTTGAAGGATGATGACTTTGAAGAAGACTCCATTGATATCCCTGACAACCCTCCTGCTAGCCTGTACACAAACATTCATGTATTTGAAAACTATGACGCCACCAAGGCTTATAGCAGTGTGGACGAATACTTTTGGGGGAAACACCCCTCTACCGGAGACTTCTTTGTCATTATCTTACACGAACCAACTCAAATCAGCAAGATAAAAATCGTGACAGGAACGGACGATCGTCAGAACGATATCCTGCACCATGGAGCTCTGGAAGTAGGAGAGAAGCTGGTGGGGACAAAGAGAGGAAGGCAGTGTTCTTCCTACATCACGTTAGGGGAGTTTAAATATGGTAACATTGAGGTTCAAGACGTGGACCACAAGATTGCCTTTGACATTGAGTGTGTTCGTATTGTGGTGACTGCCAGTCAGAAAGAATGGCTGATCATTAGGACTATAAGTCTGTGGACGACACAACCTCCCAGTCAATGGTACACGGAGGGACCATACCGTTTAGACTAAAGTTTTATATTCACGGGCCTATTCATTTATATTGATTATATGTTGGAGGCTCTATGGTTTCTTTTCTTATCCATTATATTTGACATACAGTAAATATTTGAGGATTTGGACATTAATTGGGTTCAACGTTGTATTTTTGTTATAAAATAAAATGCAGACAAATGT

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG:

id description
K13748 MGAT4C; alpha-1,3-mannosylglycoprotein beta-1,4-N-acetylglucosaminyltransferase C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230542 lncRNA upstream 10719 92099357 ~ 92099781 (+) False G203697
TU230544 lncRNA upstream 10719 92099357 ~ 92099781 (+) False G203697
TU230545 lncRNA upstream 10719 92099357 ~ 92099781 (+) True G203697
TU230523 lncRNA upstream 31567 92078722 ~ 92078933 (+) True G203679
TU230518 lncRNA upstream 35640 92074628 ~ 92074860 (+) True G203674
TU231097 lncRNA downstream 1811 92118222 ~ 92118699 (+) True G204211
TU231100 lncRNA downstream 5444 92121855 ~ 92122169 (+) True G204214
TU231112 lncRNA downstream 16606 92133017 ~ 92133229 (+) True G204226
TU231130 lncRNA downstream 36989 92153400 ~ 92154538 (+) True G204239
TU231181 lncRNA downstream 85013 92201424 ~ 92202395 (+) True G204277
XM_021576854.2 mRNA upstream 38183 92065598 ~ 92072317 (+) True borcs5
LOC110502379 mRNA upstream 46792 92057562 ~ 92063708 (+) True LOC110502379
XM_021576837.2 mRNA upstream 61270 92028434 ~ 92049230 (+) True smc1b
XM_036959047.1 mRNA upstream 102433 91937152 ~ 92008067 (+) True LOC110502371
XM_036959038.1 mRNA upstream 177146 91853852 ~ 91933354 (+) True LOC110502363
XM_021576886.2 mRNA downstream 6649 92123060 ~ 92129748 (+) False LOC110499816
XM_021576880.2 mRNA downstream 6670 92123081 ~ 92129748 (+) True LOC110499816
XM_021576894.2 mRNA downstream 22669 92139080 ~ 92151823 (+) True LOC110499833
XM_021576940.2 mRNA downstream 271698 92388109 ~ 92392385 (+) True LOC110499877
XM_021576970.2 mRNA downstream 337914 92454325 ~ 92460616 (+) True LOC110499906
TU230483 other upstream 85758 92021755 ~ 92024742 (+) True G203646
TU230367 other upstream 263100 91826849 ~ 91847400 (+) True G203551
TU230248 other upstream 438601 91668836 ~ 91671899 (+) True G203438
TU230224 other upstream 486207 91622001 ~ 91624293 (+) True G203414
TU230045 other upstream 571127 91366337 ~ 91539373 (+) True mgat4c
TU231132 other downstream 40864 92157275 ~ 92159903 (+) True G204240
TU231530 other downstream 564935 92681346 ~ 92682355 (+) False G204593
TU231531 other downstream 564935 92681346 ~ 92682313 (+) True G204593
TU232035 other downstream 721013 92837424 ~ 92838127 (+) False LOC110499942
TU232439 other downstream 1254982 93371393 ~ 93388550 (+) False G205404

Expression Profile