RNA id: XM_036959106.1


Basic Information

Item Value
RNA id XM_036959106.1
length 7182
RNA type mRNA
GC content 0.51
exon number 43
gene id LOC110499841
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 92153384 ~ 92190372 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGACTGCTTGAGGCGGTGCCCCTCTCTGTGGAGCTCCCTCTGACTCTCCGCCCTTGGAGGCGTTTCAAATATCGCAGAGAGTAATGATCAAATATCGTCTCTATctatataacgttagctagctaacgttattttGCCTACCAGAAAGACCCCCAGTTGAATTTGTAAGGCCTAAGGAAAACACACAGAGGTCATCATGGGTGACGACAGTGAGTGGATGAAGTTGCCCATCGACCAGAAGTGTGAACACAAGGTATGGAAGGCCAGACTAAATGGCTATGAAGAAGCCCTGAAGCTCTTCCAGCGTATAGAGGACGAGAAGAGCCCAGAATGGGGCAAATACCTGGGCCTGCTTAAGAAGTTTGTGACAGACTCAAATGCTGTGGCCCAGCTCAAGGGTCTCGAGGCAGCACTTGCTTATGTTGAGAATGCTCATTTGGCTGGCAAAACATCAGGAGAGGTGGTGTCTGGAGTGGTCAGTAAAGTGTTTAACCAGCCTAAAGCCAGGGCCAAAGAGCTGGGCTCCGACATCTGCCTCATGTACATAGAGATCGAGAGGGCTGAGGTGGTTCAGGACGAGCTCATCAAAGGCCTCGATAACAAAAACCCTAAGATTGTTGTCACCTGTATTGAAACTTTAAGGAAGGCACTTAGTGAATTTGGCTCCAAGATTATTACCCTGAAGCCAGTGGTGAAAGTtttgcccaaacagtttgagtcGAGAGAAAAGGCAGTCCGAGATGAGGCCAAACTACTCTCAGTAGAGATCTATAAATGGATCCGGGATGCTCTGCGACCTCCTCTCCAGGGCATCAACTCTGTTCAGTTGAAAGAGCTGGAAGAGGAGTGGGTGAAGCTGCCAACAACGGCCCCTAAACAAAGTCGCTTCCTCCGCTCCCAGCAGGCCCTCAAGGCCAAGTTTGAACAGCAGCAGGCGGCTGGAGGAGACGAGGCAGACGGAGATGACGATGACGAACCTGCACCTCAAGTTGATCCTTATGAGCTGCTGGAACCAGTGGAGATCCTCTCAAAACTACCTAAAGACTTCTATGACAAAATTGAGGCCAAAAAATGGCAGGAGAGGAAAGAGGCCTTAGAAGCATTGGAGACCTTGGCTAAAAACCCTAAATTGGAGAACGGTGACTATGGGGACTTGGTCAGAGCACTAAAAAAGGTTATTGGGAAAGATGCAAATGTTATGTTGGTGACCTTGGCAGCCAAATGTTTGGCTGGACTAGCTGCTGGGCtccggaagaagtttggaacataTGCAGGACATGTGGTGCCAACAATTTTAGAAAAGTTTAAAGAGAAGAAACCTCAAGTGGTCCAGGCCTTGCAAGAGGCTATTGATGCAGTCTTCCTTACTACAACTCTCCAGAATATCAGTGAGGATGTATTGGGGGTGATGGACAATAAGAACCCTTCCATCAAACAACAGGCCTCTCTGTTCCTGGCCAGAAGCTTCCGCCACTGTACCCAAGCCACATTGCCAAAGAGCATGCTCAAAGCTTTTTGCCCTGCATTTCTCAAGCAAGTGAATGATTCGGCCCCAGAGGTGAGAGATGCTGCGTATGAAGCTTTGGGTACAGCCATGAAGGTGGTGGGTGAGAAGGCTGTCAACCCATTCCTGGCTGATCTGGATAAACTCAAGCTTGACAAGATTAAAGAAAGTGCTGATAAAGTGGAGCTGCTGGGAAAGAAAGGAGGTGGAGGGGCGGAGAAGAAGGCACCTGCTGCAAAGGTAGCACCGCCTGCAAAGGTAGCACCGCCTGCTGAGAATCCAGCTAGGTCCTCTGGACCACCCAAGAAGGCCTCAGCAGCTAAGTCTGGTGGACCTCCTAAGAAAGGGAAATCTGCCTCTGCTCTGAGTGCCAAAGGAAAGAAAGTTCCTGAAACAAAGGAATTCATAGAGACAGAGCTATCGATTGAAGTATGTGAGGAGAAGTCGGCCGCGGTTCTCCCTGCCTCCTGCATGCAGCTGCTGGACTCTGCTAACTGGAAGGAGAGACTGGCCAGCATGGAGGAGTTTCAGAAGGCTGTGGAGCAGATGGACAAGAATGAGATGCCATGCCAGGCTCTGGTCAGGATGCTGGCCAAGAAACCAGGCTGGAAAGAGACTAACTTCCAGGTGATGCAGATGAAGCTCCACATTGTGGGTCTGATAGCCCAGAAGGGCTCCTTCTCCAAGACGTCTGCCTTCGTGGTGCTGGACGGCTTGGTTGATAAAATAGGAGATGTGAAGTGTGGGGGTAAAGCTAAGGAGGGCCTGACTGCTACTGCCGAGGCCTGTTCCCTCCCCTGGACTGCTGAACAGGTGGTCTCCATGGTTTTTGCACAGAAGAATCCAAAAAATCAAGCTGAAACCCTCAACTGGTTGTCTAACGCCATGAAGGAATTTGGATTTACTGGCATCAATGTGAAGGGTTTCATCAACAACGTAAAGACGGCGTTGGGAGCGACCAACCCTGCGGTGCGGACAGCAGCCATCACCCTCCTAGGAGTCATGTACCTGTACATGGGAGCTCCTCTACGCATGTTCTTTGAGGATGAGAAACCTGCCCTGCTGAAACAGATAGATGATGAGTTTGAAAAGATGCAAGGCCAGTCTCCTCCGGCTGCGTTCAGAGGAACCAAgaaaggaggagcagaggaggacgGTGAGGAGGCAGACGaacaagaggaggatggaggaggagcacCTGACATCATGGATCTGCTACCTAGATCTGACGTCAGTGATAAGATCACACAAGACATGGTGGATAAGATGGCTGATAAGAACTGGAAGATCCGTAAGGAAGGTCTGGATGAGGTGGCAGCGGTCATCTCTGAGGCCAAGTTCATCCAGCCCAGTATAGGAGAACTGCCCATGGCACTGAAGGGCCGACTCAACGACTCCAACAAGATCCTGTGCCAGCAAACCCTGACTATTCTTCAACAAATAGCCGTAGCGATGGGCCCAGCTCTGAAACAACATGTTAAGAGCCTGGGCATGCCCATCATCACTGTACTGGGAGACAGTAAGACCAATGTGCGTGCTGCTGCCATGACAACCCTGCAGGCCTGGGTAGAACAGACCGGCATGAAGGACTGGCTGGAGGGAGAGGACCTTTCTGAAGAGCTCAAGAGGGAGAACCCTTTCCTCAGGCAGGAGGTGCTGGGCTGGCTGGCAGAGAAGCTCCCCACCATGCGTACGGTGCCCTCCGACCTGATGCTGTGTGTGCCCTACCTGTTTATTTGTCTGGAGGACCGCAACGGAGATGTGAGGAAGAAGGCCCAAGACGCCCTGCCCACCTTCATGATGCACCTGGGCTATGAGAAGATGTTGAAGGCCACTGGCAAACTGAAGCCGGCCTCCAAGGAGCCAGTGTCTGTCCTGCTGGAGAAGGCCCGGGCAGTGATGCCAGCCAAGCCTGCTCCACCACCTGGCAAAGCTGGCGCAGCCAAGTCTAGCAGCGGCGGCGCCCCCGCTTCAAAGTCAGGTCCGTCTAAACCTAAACCTGTCATTGATGACTATGATGATGACGATCCTGAGCCTGAGACTAAGTCTAAGAAAGTGGTCAAGCCTGGAGCAGCCAAAAAGGGTGTGCTTGGGAAGAAGGCCCCGGTCACGAAGGCCAAGGATGAGGAGGACCGGTCTGGTGTCATCTTCATCCTGGTCCCCAATGGCAAGGAGCAGAGGATAAAGGAAGAGAAAGGGCTGAAGGTGTTGAAGTGGAACTTCCAGACCCCGCGAGATGAGTACGTGGATCAGCTAAAGACTCAGATGTCCACCTGCTTCGCCAGATGGCTCCAGGACGAGCTCTTCCATGCTTCTGACTTCCAACGCCAGGTCAAGGCTATCGGGGTCATGGGAGAGCGAATGGAGGATGAGCTTGAGGGCACAGTCAGCTGCTTGGACCTGATCCTGAAGTGGTTCACGCTGCGTTTCTTTGAGACCAACAGCACTGTGCTGATGAAGGTGCTGGAGTACCTCAAGCAGCTCTTCCCCACACTGAGCAGAGAGAACTACCACCTCAATGAATACGAGGCCTCCTCCTTCATTCCCTACCTCATCCTCAAAGTTGGCGAGTCGAAGGATGTGGTGCGTAAAGATGTGCGTGCCATCCTCACCATGCTGTGTAAAGTCTACCCGGCCAGCAAAGTCTTCCCATTCCTCATGGACGGGACCAAGTCCAAGAACTCCAAACAGAGAGCTGAATGTCTTGAGGAGCTGGGCTGTCTGATAGAAAACTATGGAATGAATGTGTGTCAGCCAACACCGGCCAAGTCCCTGAAAGAGATCGCTGTTCACATCGGAGACAGGGACAACTCAGTACGCAACGCTGCCCTCAACACAGTGGTGGCTGTGTACAACGTCTGTGGCGACCAAGTCTACAAACTCATTGGCAATTTGTCTGAGAAGGAGATGAGTATGTTAGAGGAGAGGGTCAAGCGCTCGGCTAAGAAGACCCCGGCAGCTGCTCCACCACCCAACAGACAggctgcagagagggagaggctcCAGAGAGAGCACCCCTCCAACCCCAATGCTACCTTCATGAGGAAGCCTGCTCAGCAACCTCAGGAAGAAGTGCCCAACAAGCTCAACCAAGCGCGGGCTCAAAATGCAGAACGGGAACACTCACACCCCTCTATCCCCAAGGAGTTTCAGCTGGATCTAGACATGATTGAGAACGACCACACACGGGTCAGTGAGCTGCCTGACCTGGTCCAACACAAACTGGAGGAACTGCTGGAGCCCATCATGATGCCAGAGCCCAAGATCCGCTCTGTGTCGCCCCACTTTGACGACCTCCACAACAGTACTGCGTCCACCATCAACTTTGTCATCTCCCAGGTGGCCAGTGGCGACATCAACACCAGCATCCAGGCTCTGGCCCAGaTTGACGAGGTGTTGAGGCAGGAGGACAAAGCGGAGGCCATGTCAGGTCACATTGACCAGTTCCTCATCGCTACCTTCATGCAGCTGCGCCTCATCTACAACACACACATGGCTGACGACCGCCTCGACAAGAAGGACATCTTCAAgctctacagctgcatcatcggcAATATGCTCTCACTGTTCTCTATGGAGAGCCTTGCACGGGAGGCGTCGATGGGCGTGCTGAAGGACCTGATGCACGGTCTGATCACCCTGATGCTGGATGCCCGGGTGGAGGACATCGAGGACGGTCAGCAGCTCATCCGTTCTGTCAACCTACTGGTGGTCAGAGTACTGGAGAAGTCTGACCAGACCAACATCCTCAGCGCTCTTCTAGTGCTGCTACAGGACAGTCTTACCACTTCTTCAGGGTCACCTATGTTCGCTGAACTGGTCATGAAGTGCCTGTGGCGTATGATCCGGTTCCTGCCAGAGACCATCAACAGCATCAATCTGGACCGCATCCTACTGGATGTTCACAACTTCATGAAGGTGTTCCCCAAAGAGAAGCTCAAGCAGCTGAAGAGTGATGTACCCCACAGGACCCTCAAGACCCTACTGCACACACTGTGTAAACTCACTGGAGCCAAGATCCTAGACCACATGTCCATGATCGAGAACAGGAATGAGTCTGAGCTGGAGGCCCACCTGAGACGTGTGGTTAAACACTCTGGAAACTTCTCTGGCATGAAGTCTGACAGGGGCACAGAGAAAGGACAGGATGACAGGATGTCGAAAGCTAAAGTGAGCGACATCCTCTCTGAGATCTTCAAGAAGATTGGTtccaaggaaaacacaaaagagGGTCTGACGGAGCTGTATGAGTACAAACAGAAGTACTCGGACGCTGACCTGGAGCCCTTCCTGAGGAACACGTCTCAGTTCTTTCAGAGTTACGTGGAGAGAGGCCTGCGCATGATTGAGTCTGAGAGAGAGGGCAAAGGCAGGATCCAGCCTTCTAGCACAGtgatTCCCCAACATGGCCTAGACTCTGGCTCAGTGCCTCTGAACGGAGAGGAGATGAAACCTGCTGTGTACTACGAGAGACTGAAgatactgagacagagacagggactggAGAACAACTCCAGGCAGGCTCAGCTATTGCAGCAGGTGGAGGGGGACAGTGGACCAACGCGTCCCATCACGTCCCTGCTGTCCAAGCCCTCGGTGGCCTCCTCCACAGACATGCTCCAAAGCAAACTGTCTCAGCTCAAGGAGTCCCGTGAGTCCCACTTCCAGCAGGAGCAGTCCCACAGCCCCAcacgctcctcgtcccctgccgcCAACCTCGACGACCTCAAGAAGAGGCTGGAGCGGATAAAGAGCAACCGCCAATGAGTTACCCCTGACCCCACCTCTATACCCAGTCTATCCAATGAGTGacccctaacccacctctatacCCAGTCTATCCAATGTGTTAGCCAGCCTCCACCCTGAAACCCACCAAGCATTGGCTTTACCCACCCCCAAACCCATCTCTTATCCTGGCCTTATTTTTCAGGGCAATCCCCTCTTCTGTGTATAAATTGAAAAAAAGAACCTGTCATTGTATAATATTCTATAAGTGGACTAGTTTCTGTTTAGTAATGTGGCACAATTGTTTGTATATACTCATGTGTGCTAACCACTCAATGCTTTTAAGTGTCAAGTTAGGGTTATAGTGTACAGTTTCCATGTGCAAAATGCTGTAATATGTGTAACTTAACCTGTCCTTTTTTAGGTTTTAGAATTCCATGGTCAAACCATAACATTTCTCTGAGCCTCCAGCAGGGTTGGAGTGTGTTCCATTTCAATTCATGAAGTAAACTGACattccaattttttttttattgtcatACAGAAGTATTGAGGAAAATCAGAATTGGAATGTCAGTTTACTTCtgaaattgaaatggaattgaccccaaacctgtTTCCAGGCCTTGTTAGTTTATACCACTGTTTGCTGCACTTGCTAATGAGCTTTTTCATCTATGAAGTTAAGACTCATAAAACCTGAAGGATTCTGTTCTCAAAGTGAAGGAAGGAGCATGGCATGAAGGAATTCATGTTTTGTAAATAAAGTTTGCATTACTAAAATCTGCTGGTTTAATGATGCGCCCATCTTGCGTACTGTAGCAGAATGTTGCTCATTCTGActcattgtttttatttaattcaaATGGAAGTAGTCTTAAATTGTTGCTCTTATGAGTGTTTAATCTGTAGTGAAAATGGCAATAAAGCAAGTTTGTTTTTGAACAAA

Function

GO: NA

KEGG:

id description
K16803 CKAP5; cytoskeleton-associated protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231111 lncRNA downstream 20470 92132618 ~ 92132914 (-) True G204225
TU231110 lncRNA downstream 21302 92131867 ~ 92132082 (-) True G204224
TU231104 lncRNA downstream 31343 92121768 ~ 92122041 (-) True G204218
TU231098 lncRNA downstream 34245 92118882 ~ 92119139 (-) True G204212
TU231082 lncRNA downstream 53603 92099390 ~ 92099781 (-) True G204196
TU231183 lncRNA upstream 7579 92197951 ~ 92199885 (-) True G204279
TU231194 lncRNA upstream 16718 92207090 ~ 92207340 (-) True G204288
TU231196 lncRNA upstream 18933 92209305 ~ 92209566 (-) True G204290
TU231293 lncRNA upstream 65372 92255744 ~ 92307743 (-) True G204379
TU231335 lncRNA upstream 136225 92326597 ~ 92326823 (-) True G204421
XM_021576828.2 mRNA downstream 125611 92021755 ~ 92027773 (-) True LOC110499762
XM_036958992.1 mRNA downstream 316204 91780201 ~ 91837180 (-) False lrrk2
XM_036958987.1 mRNA downstream 316357 91780201 ~ 91837027 (-) False lrrk2
XR_005038802.1 mRNA downstream 316357 91782177 ~ 91837027 (-) True lrrk2
XM_021580318.2 mRNA downstream 412555 91691853 ~ 91740829 (-) True lrriq1
XM_036934765.1 mRNA upstream 6964 92197336 ~ 92202031 (-) True LOC110533906
XM_021580367.2 mRNA upstream 19958 92210330 ~ 92228748 (-) True LOC110502383
XM_036959112.1 mRNA upstream 43059 92233431 ~ 92261119 (-) False cry2
XM_036959107.1 mRNA upstream 43059 92233431 ~ 92265019 (-) False cry2
XM_036959109.1 mRNA upstream 43059 92233431 ~ 92265019 (-) True cry2
TU230896 other downstream 365281 91787187 ~ 91788103 (-) True G204024
TU230773 other downstream 562335 91589212 ~ 91591049 (-) True G203915
TU228979 other downstream 1711959 90377557 ~ 90441425 (-) True G202279
TU228163 other downstream 2543494 89606837 ~ 89609890 (-) True LOC110499346
TU225173 other downstream 4826915 87322139 ~ 87326469 (-) True G198912
TU231426 other upstream 207688 92398060 ~ 92439601 (-) False LOC110499897
TU232213 other upstream 771672 92962044 ~ 92962934 (-) True G205192
TU234006 other upstream 2122052 94312424 ~ 94312774 (-) False G206742
TU234005 other upstream 2122155 94312527 ~ 94312774 (-) True G206742
TU234008 other upstream 2123018 94313390 ~ 94313918 (-) True G206744

Expression Profile