RNA id: TU231427


Basic Information

Item Value
RNA id TU231427
length 2394
lncRNA type read_through
GC content 0.39
exon number 2
gene id LOC110499897
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 92398054 ~ 92443838 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcgggaggccttaaAGTTAAGAAATGGCTGAGTTATTGATAAAACAGGAAATCCATGTCCATTTAAATATTTTGTAAATCCACTCCACAATGGCCTATCAAAGACATGACCATGATGAACCTCGTTAAGTTTCAAGCATCATAGTTCATGCGtacgtcacaaatggcaccctattccctttatagtgcactacttttgaccagcaccCATAAGGCTGtaatccaaagtagtgcactgtacagtAAAGGGAGTAATGTGCTATTTGGGACATAACCCATTTCATTCACTTATATGTACTTTACTCAAGTGTATGTTTATGTTCCTTCATTTGCATTAGATCAGGTACCGCGGCCCAAAAACGgaaaaatgaataaataacaacacatttaaaaaatgtgaactCAGTTGGGGTCTCAACTGACTGTTgagagtaagaatagtagaatacacatggTGCATTTTTTACAtggtggttgtgcatcagcagtttttgtcactgacagtcactgacagtcactgaATTAGCCCGTGTCAATTTAAATTTTTTCGATTTGTAAATTAGTCTATCCCAGCTATCTAAACctgtagtaatcatggtcaaattacaGACTGAGGGTGCCCATGGATATTAACCAAAtgtttagaattgcaggaaattagcttaaaaACTGCAAATCTTTCTCTCCGCCCCAcagcaaaatgagtagaattgcatggaATTAGTTATAAAATTGCAAAATGTTCTCTACTCCACATGGAGAGAAGTAGAATTGCATCAAACTTATTTTAAAAGTACAACATTTTCTCTATATATTGTATTGTctaattgcaggaaatgaacaataaaaaatatctatatagaTTATCTCCACTGTCAAGAGGGGGGCCACTAACAACAAAATGTAGCTCTGACTACAtgtgtgggtacgcagacccgcTAGCCACTGCAGCTTTCAGATttgttgtggcccccacccccatcaaaggtGCCCTTCCCTCCATTACATTTATAAATACTGATAGATAGTTGACACTGACATTCCCAGAGTAGGAGGGACAGTTGAAAACACACATGCCTTTTCTTTCTATGCTTTCCAATCACGTCTAGCCTTGGTCCCAGTCTGTTTGAGTTCACAAGATGATATAAACGGATCTGGGACTAGCTAATTCACTTCCACATTGTTACGTGTAATCCTGAATTACTGTCCATTCTGATCAGAGAATAAAAGTAGATGGCCAATTTCTTCCCACTGGACAaatactggttgaatcaacgttgtttccacatttcAACCAAATAACTCAATGTGATGACGTTATCAACAcagaaaactgattggatttgaaaataGTCATCAGCGTAAGGTCATTTcgtatttttttttttccccacacgacttttaacctaaatcaaaTGACATCGTGAAATGTTTTGTtcatttcacgttgaattcacattaTTTGACAACTTGACCACATGTAAATCGAAACTAGACGTCTGTTCCCAGTGTGCTGTTTGTTCTCCTTTTCGGGTTTGGTTTCTTACGTTTCTATTTGAACAGTCACTGTGAGGACAtttttatttgaaaataaataaagagaaaacaacTTGGCATGGTATTTCCACACCCTCACATTATGCATCGCATGTTTCAAGAGGTCGTTTTTCCTTCTTCCTGAACACAATATGCTGTTTATTATTATGACAAGTCTCACCTATTTTATTTTAATGCTGTTTCATCTTGTCCTGTCTTTACTGTTTTCATCGGGACACTTCTGCTAGTTAATATATGTCTTGGAGACTCTGTTACTATAAACTGggatggggccctggtcaaatatagtgcactatacaccaagtgtacaaaacattaagaacacctgcctAATTTTGAGTTGCGCCCCCTttagccctcagaacagcctcaattcgtcggggcatggacacTCCAAGGtatcaaaagcgttccacagggatgctggcccgtgttgactccaattcttcccacagtATGTAATCCTCTCAAACCGGTGTGACTGGCACCTACACCCATACCGCACTTGAATCTTttgtcaccctctgaatggcacagataaacaatccatgtctcagttgtctcaaggcttaaaactccttctttaatctgtctcctcctcttcatctacactgattgaagttgatttaacaggtgacatcaataagggatcatagctttcacctggtttcacctggtcagtctgtgtcatggaaagagctggtgttcctaatgttttgtccactcggTGTATATTGAATAGTGTGTCATTGGGGTCGCAGTTTGTTTGTCTATGATAGAACTATTTTTGCAAAAACTGATGCTGTATTCTATAAATAAAGCTACTCTGTATTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231482 lncRNA downstream 519 92396070 ~ 92397541 (-) True G204547
TU231335 lncRNA downstream 71237 92326597 ~ 92326823 (-) True G204421
TU231293 lncRNA downstream 90317 92255744 ~ 92307743 (-) True G204379
TU231196 lncRNA downstream 188494 92209305 ~ 92209566 (-) True G204290
TU231194 lncRNA downstream 190720 92207090 ~ 92207340 (-) True G204288
TU231696 lncRNA upstream 20263 92464101 ~ 92464313 (-) True G204728
TU231704 lncRNA upstream 25687 92469525 ~ 92469862 (-) True G204736
TU231707 lncRNA upstream 31825 92475663 ~ 92480209 (-) True G204738
TU231766 lncRNA upstream 162180 92606018 ~ 92606777 (-) True G204792
TU231767 lncRNA upstream 163805 92607643 ~ 92607903 (-) True G204793
XM_036959107.1 mRNA downstream 133041 92233431 ~ 92265019 (-) False cry2
XM_036959109.1 mRNA downstream 133041 92233431 ~ 92265019 (-) True cry2
XM_036959112.1 mRNA downstream 136941 92233431 ~ 92261119 (-) False cry2
XM_021580367.2 mRNA downstream 169312 92210330 ~ 92228748 (-) True LOC110502383
XM_036934765.1 mRNA downstream 196029 92197336 ~ 92202031 (-) True LOC110533906
XM_036959225.1 mRNA upstream 426008 92869846 ~ 92881298 (-) True LOC110499952
XR_005038829.1 mRNA upstream 643423 93087261 ~ 93090465 (-) False LOC110499968
XM_036934431.1 mRNA upstream 732472 93176310 ~ 93199900 (-) True LOC118936876
XM_021577074.2 mRNA upstream 894059 93337897 ~ 93372952 (-) True LOC110499982
XM_021577085.2 mRNA upstream 1033223 93477061 ~ 93606905 (-) True LOC110499989
TU230896 other downstream 609957 91787187 ~ 91788103 (-) True G204024
TU230773 other downstream 807011 91589212 ~ 91591049 (-) True G203915
TU228979 other downstream 1956635 90377557 ~ 90441425 (-) True G202279
TU228163 other downstream 2788170 89606837 ~ 89609890 (-) True LOC110499346
TU225173 other downstream 5071591 87322139 ~ 87326469 (-) True G198912
TU232213 other upstream 518206 92962044 ~ 92962934 (-) True G205192
TU234006 other upstream 1868586 94312424 ~ 94312774 (-) False G206742
TU234005 other upstream 1868689 94312527 ~ 94312774 (-) True G206742
TU234008 other upstream 1869552 94313390 ~ 94313918 (-) True G206744
TU234014 other upstream 1884072 94327910 ~ 94328183 (-) True G206750

Expression Profile