RNA id: XM_036959174.1


Basic Information

Item Value
RNA id XM_036959174.1
length 4441
RNA type mRNA
GC content 0.46
exon number 26
gene id LOC110499936
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 92696182 ~ 92799984 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACGCTGTGGACGGtgacagagagagcgggagagagaaagagagaaagagctgtGTTTGATAGCAGTAGTATGTGGCAGCACTCGCCTAGTGATGGGAAGATGGCTGGAGAAACACCAGAGAGCTCAGGGACTTCACTGCTTCATGACGCAGAGGCTACACCTAGGAAGCCCAGGCACTTCTTAAAGGATGTAATTTTTCATGGCAAATTTCAActcCTAAACTGCCTGACACCTGAGGAGAACACAGGATGTCAGCATGGCCTGTACTTTCAGGACGGAGAGAGGCGGGTGGACTACATCCTCACCTACCACATCAAAAAGCCCAGCAGCTCGCGCTCCAACCGACAGTCCTCCCGCTTCACTGACAACGCCTTTACACGGAGCCTCCGCCGTGGGACAGCCAGGCTGGGACGAGCGCcaccccctcagcccagaggTGACCCGGAGGTGGCCTCCCAAGACCACAGCATGGACTACCACGTGGACGACAAGCGCCTCCACCGGGAGGAGTTTGAGGGCAACCTGAGGGATATGGGCATTGAGCTGGAGAAGGATGAGGATaCTAAAACTCCAGGTGTGGGCTTTGTGAAGATTCATGCTCCATGGCATGTGCTCTGTCGAGAGGCAGAGTTTATGAAGCTCAAGATGCCCACGAAAAAAGTATATGAAATGAAGCAGAGTACGGGTGTTGGGGCGAAGATCAACACATTGGTAAACAAAGTGACAGAACCTCTCTATCCCAACGTGGAGGATAACAGGACACACAATGTTAAGCATCTCTCCTACATGTTCTCCAGGGAAAAACAACACTTGTTTGATTTATCAGACAGAGACTCCTTCTTTGATAGTAAAACAAGAGCTTCAATAGTTTTTGAAGTATTGAAACGTACAAAATGCACAAAGGCTAAGTATAGTATGGggTTCACCAGCCTGCTAGGGAGTGGAGTCTACACAGATGCCTATCCACTACATGATGGAGATTTGGATGGTGAAAACGTTGAGCCCAATGATAGGAAGCTCTTGTATGAGGAGTGGGCGAGTTACAGTGTATTTTACAAATACCAACCTATCGGGCTAGTAAGGAAGTACTTTGGGGAGAAGATAGGGCTGTACTTTGCATGGCTGGGGCTGTACACCCAAATGCTGATCCCTGCTTCTCTAGTGGGAGTCATCGTGTTCCTGTACGGCTGTGCCACCGTAGACGACAACATTCCCAGCATGGAGATCTGCCACCCCAAGAACAACATCACCATGTGCCCGCTGTGTGACAGAGCCTGTAGTTACTGGAAACTGAAGGAAGCCTGCGGGACGGCCCGGGCCAGCCATCTCTTTGACAACCCTGCCACCGTCTTCTTCTCCATCTTCATGGCCCTCTGGGCTGCCATGTTCATGGAGCACTGGAAGAGAAGACAGATGCGTCTCAACTATGAATGGGATCTGACAGGCttcgaggaggaggagGAAGAGCTGAAGGACCACCCACGAGCTGAGTACGAGCTCCGAGTCATGCAGAAGTCCCTGAAGAAAGAACACAAGACACAGAAGAACCCTACAGAGATAGCAGAAGAAACCACAAACAAATGGAAGCAAACAGTTCAATCTGCCATGGCTGGGCTAAAACTGACAGAAAAAGAAAAGCTGACGTGCAGAGACCGGTTACCAGCGTACATGACCAACGTCGTCATGATGCTTTTGATGATCGGGGTAACGTTTGCCATAGTGTTCGGAGTCATCCTTTACCGGATATCCACCAAGACAGCGCTGCACATGAGCAACAACCCCACCACGCGGTCCAACGTCCGTCTGACGGTCAAAACCACCGCTGCCATCATCAACCTGGTGGTCATTCTGATCCTAGATGAGGTGTACGGAGCTGTCGCCCGCTGGCTCACTGTCCTCGAGGTTCCAAAGACAGACAAGAGCTTTGAGGAGAGATTGATATTCAAAACGTTCATCCTAAAGTTTGTGAATGCCTTTACCCCCATCATATACATAGCATTTTTCAGAGGCAGGCTTGTTGGTCGACCTGGAAGTTATCTTTATGTGTTTGAGTCGTATCGaatggaagagTGTGCTCATGGAGGATGTCTGATGGAGTTGTGTATTCAGCTCAGTATCACCATGTTGGGAAAGCAACTCATCCAGAACAATTTATTTGAGATTGGCATTCCGAAGCTGAAGAAGCTGATAAGGTACATCAAGTCCAAGAGAAGGTCCTtccaggaagaggagagagagaagaagttaCAGCGCTATGAGACGGACCACTTCCTAGAGCCCTTCGCAGGCCTCACGCCAGAGTACATGGAGAtgaTAATCCAGTTTGGGTTTGTGACCCTGTTCGTGGCATCGTTCCCGCTGGCCCCACTTTTCGCCCTCCTTAACAACATCATCGAGATACGCCTGGATGCCAAGAAGTTTGTGGCCGAGCTCAGGAGGCCAGTCGCTGCAAGGGCAAAAGACATTGGAATATGGTACAACCTTCTCCGAGCTGTGGCTAAAGTGGCCGTCATCATAAATGCGTTTGTGATCTCCTTCACGTCAGACTTCATCCCGAGGCTGGTCTACCAGTACATGTACAGCCCAGACGGCTCCATGCACGGCTTTGTCAACCACACCCTGTCCTACTTCAACGTGAGCAACTTCCAGGACGGTAAAGAACCTATGGACCCACAGCATCAGGTGGAGATGTGTAGGTATAAAGACTACAGGGAGCCCCCATGGTCCAACACACCCTACGTCATCTCTAAAGAGTTCTGGGCGGTCCTGGCTGCCAGACTGGCCTTCGTCATCGTCTTCCAGAATGTGGTGATGCTGATGAGTGACATCGTGGACTGGCTGATCCCAGACATCCCTAAAGACATCAGCCTTCAGATCCACAAGGAGAAGATCCTGATGGTGGAGCTGTTCATGAAGGAGGAACAGGGCAAGATTCAGTTCATAGACAGCATGATGCCTTGTGGTGGCAAGGAGAAGCGCAACAACCATGCCCCTATAGCCCGCTCACGctccatcccacacacacacagtcacacacacgccAACAACTTCTAGCAGCTACTGTAAGGTGTAGCCTAGCTAGCCAGGCAAAGGGTTACTACTGTCTGTATCCTTTTCCTTGTGCAGACATTCCATAGAAAGGGAGAGGTGCTCCCTGCAAGATGTTGTTGAGGCCCAACGAGGAGAAACAGAAACTGTTCCAGTTCTCAATACCTATCTGTCAAACCTCTCAGTGaataactagctaactagctaactgcCAACAAGTTAACTAACTGCCAACTACTGGGGTCATGGGCTTAGAGGTCGCAAATATGCCATTTAGCtaacgcttttatccaaagcgacttatagTAGTGCAAATTATAGCGGACCATGTTCAATGAGAGAAaaacgttttttttgttttttttctcctttgcatAATGCTGTcaagaaaatgtattttgtaacatgctttacagtactgtatgtcTGGCATACAAGGTATTTCTATGTTTGCCTCTTTTTAAAAGGATGTAGATGATACGTTATCCTTTACTGTTATGACTCAACCATGTTCATGGTGCGAACAATCACTCTCGGAATACGCTACATGTTTTGTTCAATTACAACAGATTTATTTTCTTTCTTAATGTGCTTTGTTCTCAaaattaatattttttatttacatattTTATTGATTATATTTTCATcgattaaacatttaaaaagtaattGGATATTATGAAATGTATGTGTGTAGAGCAGATAATATAATCTTATTCTTAAATGGGTGACATGTTTTTTATGTCTTTGATACAAAGATCTCAAATGGTATTAGCTACCAAGCTCATTATTAGTTAACAAGCTGAAAGTTGAGGGCTGTTTGTGGGCTCCCATGCTACCATAGAGTTAAAGCAGTTATTACATGGACTGTATTATAGCATAAGAGTCAAAAGGCTCTGTTTAACAGATACTTCTAAACATAGTAAAATAGGTTGAATTACTTTACTTCAGAGCATAATAAACTCAGCAGTGTTACAAATATCCCCTGTTATAAAATGCACAGTTCAGGCCAGTCTATCCCTGCCATAATACAGACTGATCCTCTATGGCTTCTTTTCTGCTTCAAAGCCAGGCAGGATATTATTTTTGAAACTGTACTTAAAACTGTATATTGTTTACACTTACTTCTGTCTACTGGATATACTAAGAAATATAATATTTCTCGTTCTTTACTTGCCGTTCTTCAGAAGACAAGGACACTTTGATCCTTTTATATGTCAAACTAATGTATTCATACAAAAGTGAACATCATTTCATAGCAGCATATTTTACTGTATTGATACCGACTATGTTGTAAATGTTTAGGAGATCTGCCTATTCTTATTTGATGTGACGTTGAATAAATAATGCATTAAATTGAATGTAAACAATAAATATATGTTGCTGTGGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231840 lncRNA upstream 44417 92683845 ~ 92684139 (+) True G204840
TU231528 lncRNA upstream 45307 92682694 ~ 92683249 (+) True G204591
TU231666 lncRNA upstream 71310 92657038 ~ 92657246 (+) True G204704
TU231663 lncRNA upstream 78410 92649906 ~ 92650146 (+) True G204701
TU231653 lncRNA upstream 89405 92638936 ~ 92639151 (+) True G204695
TU232034 lncRNA downstream 39104 92839088 ~ 92839327 (+) True LOC110499942
TU232042 lncRNA downstream 45922 92845906 ~ 92846227 (+) True G205028
TU232044 lncRNA downstream 47542 92847526 ~ 92847726 (+) True G205030
TU232048 lncRNA downstream 52672 92852656 ~ 92852864 (+) True G205034
TU232055 lncRNA downstream 67898 92867882 ~ 92868304 (+) True G205041
XM_036959148.1 mRNA upstream 48358 92515824 ~ 92680198 (+) True LOC110502389
XM_036959172.1 mRNA upstream 58812 92664825 ~ 92669744 (+) True LOC118943605
XM_036959163.1 mRNA upstream 85227 92642030 ~ 92643329 (+) True LOC118943603
XM_021576970.2 mRNA upstream 267940 92454325 ~ 92460616 (+) True LOC110499906
XM_021576940.2 mRNA upstream 336171 92388109 ~ 92392385 (+) True LOC110499877
XM_021577002.2 mRNA downstream 37212 92837196 ~ 92839440 (+) False LOC110499942
XM_021618510.2 mRNA downstream 41808 92841792 ~ 92845806 (+) True LOC110533914
trnap-ugg-3 mRNA downstream 235006 93034990 ~ 93035061 (+) True trnap-ugg-3
trnap-agg-3 mRNA downstream 238182 93038166 ~ 93038237 (+) True trnap-agg-3
trnap-ugg-4 mRNA downstream 240733 93040717 ~ 93040788 (+) True trnap-ugg-4
TU231530 other upstream 46201 92681346 ~ 92682355 (+) False G204593
TU231531 other upstream 46243 92681346 ~ 92682313 (+) True G204593
TU231132 other upstream 568653 92157275 ~ 92159903 (+) True G204240
TU230483 other upstream 703814 92021755 ~ 92024742 (+) True G203646
TU230367 other upstream 881156 91826849 ~ 91847400 (+) True G203551
TU232035 other downstream 37440 92837424 ~ 92838127 (+) False LOC110499942
TU232439 other downstream 571409 93371393 ~ 93388550 (+) False G205404
TU232451 other downstream 571409 93371393 ~ 93388550 (+) False G205404
TU232456 other downstream 571409 93371393 ~ 93388550 (+) False G205404
TU232452 other downstream 577751 93377735 ~ 93385888 (+) False G205404