RNA id: XM_021577002.2


Basic Information

Item Value
RNA id XM_021577002.2
length 1502
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC110499942
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 92837196 ~ 92839440 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCCGTCGTAACAATCGCCGCAATAGGGCTATCGAATGAATGAGGGCTTTTGTTTTGCGCGCAACTCGGGCATCTTCACGGTGTACTCGTCTCGTTTCCATGACGATTTCAAAATCAGGTTGACTGAAAGCGAGTTACTGTTGGCAAAACGAATGTATCTAAAGTGGATCCATTTTATCGGACTGGACTAATGGGCTTCCTAAGAATTCGATGGAAACGATTGAGTCCGTTTTTGTCAATCATGGAAAGGGACTAATATACTATTTTCGGCCATGCCACAATGGTTATAATTCTGGTCTTGCTATTGGTGAATGTATTACACCCCAGTCACCAAAAGCCTCGTTCTTCTTCGGTGGTAAGGACATTTACTCCACAGAGTTTCGGTGGGCAGAGCTGTGACCTCAGGCAGCGCAGGGATGCTGTGGGGCGCGGAGGAGTGTATGAGCACCTTGAGGGAGCACCGAGACACAGAAAGCTGTACTGTGCCACAAAATATCACTTACAAATACATCCCAATGGGAAAATAGATGGGACCCTGGAGGAGCATAACCCTTTCAGTATATTGGAGATCACAGCAGTGGATGTGGGACTGGTGATGATTAAAGGACTGTTCTCCGGGAGATATCTGGCCATGAACCAAAAAGGACGACTACATGCATCTGCTGTCTTCACCCAGGAGTGTGAGTTCATGGAGCGGATCCATGAGTTAGGCTACAACACCTACGCCTCCCGCCGCTACCGGACAACCCCACACTCCACCTCAACAGGAAGTAGGCGAAGGGTGAGCGCTGGGAGGCTGTGGTATGTGTCAATCAATGGAAAGGGCCAGCCAAGGCGGGGCCTGAAGACCCGAAAGACAGAGAAGGCCTCCCTCTTCCTGCCTAGGGTCCTGGGCAACGAGGACCATGACATGGTTCACCTGTTGATCAACAGTAGTCTGGGGTACAGGCAGAATGCCCTCAGACTCACAGGGAAACAGGGCAGAGGAGATAGAGATGTGTCCATCTCCAGGGAGCTTGATGACAAGTCTCACTTGTCAGACACGTGGACTGTGGGAAGAGCATGACTGGTGACTGAGAGATACAAGCTCCCCCTGCCCTCATTTAAACCGGCATAATGATACTGTCCTGTGAATAAAGTGATCAGTGTCTCGAATATAATGTATCTTTGTACACTAATTGTTAACTCACATTATCGTAAGTACATGCAGTTAATGTCTTGTATTTTTCTTGATGACCATTTCATAGGAAGATGTCTGGAAGGATGCATGTGGATTTACACAATAATACAATGTACAAAAAAGCACTTGTACAATCAATGGTATATTGTCCTctgtgactcagttggtagagcttgATGCATGCCAGGCCAGGATTGTGGGTCGCATCCTGATGTACGTTACTTTGGGTAAAAGTGTTTGCAAATGATAAATAGTATGTGTATTACCATTGTGGTGTTAATTTATTTGCTTTTTATATCATAAACACATTTTCATTCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231912 lncRNA upstream 54294 92782417 ~ 92782902 (+) True G204909
TU231840 lncRNA upstream 153057 92683845 ~ 92684139 (+) True G204840
TU231528 lncRNA upstream 153947 92682694 ~ 92683249 (+) True G204591
TU231666 lncRNA upstream 179950 92657038 ~ 92657246 (+) True G204704
TU231663 lncRNA upstream 187050 92649906 ~ 92650146 (+) True G204701
TU232042 lncRNA downstream 6466 92845906 ~ 92846227 (+) True G205028
TU232044 lncRNA downstream 8086 92847526 ~ 92847726 (+) True G205030
TU232048 lncRNA downstream 13216 92852656 ~ 92852864 (+) True G205034
TU232055 lncRNA downstream 28442 92867882 ~ 92868304 (+) True G205041
TU232069 lncRNA downstream 42592 92882032 ~ 92882335 (+) True G205050
XM_036959188.1 mRNA upstream 37212 92696182 ~ 92799984 (+) False LOC110499936
XM_036959199.1 mRNA upstream 37212 92696898 ~ 92799984 (+) False LOC110499936
XM_036959174.1 mRNA upstream 37212 92728556 ~ 92799984 (+) False LOC110499936
XM_036959178.1 mRNA upstream 37212 92728556 ~ 92799984 (+) False LOC110499936
XM_036959203.1 mRNA upstream 37212 92728556 ~ 92799984 (+) False LOC110499936
XM_021618510.2 mRNA downstream 2352 92841792 ~ 92845806 (+) True LOC110533914
trnap-ugg-3 mRNA downstream 195550 93034990 ~ 93035061 (+) True trnap-ugg-3
trnap-agg-3 mRNA downstream 198726 93038166 ~ 93038237 (+) True trnap-agg-3
trnap-ugg-4 mRNA downstream 201277 93040717 ~ 93040788 (+) True trnap-ugg-4
trnap-ugg-5 mRNA downstream 210876 93050316 ~ 93050387 (+) True trnap-ugg-5
TU231530 other upstream 154841 92681346 ~ 92682355 (+) False G204593
TU231531 other upstream 154883 92681346 ~ 92682313 (+) True G204593
TU231132 other upstream 677293 92157275 ~ 92159903 (+) True G204240
TU230483 other upstream 812454 92021755 ~ 92024742 (+) True G203646
TU230367 other upstream 989796 91826849 ~ 91847400 (+) True G203551
TU232439 other downstream 531953 93371393 ~ 93388550 (+) False G205404
TU232451 other downstream 531953 93371393 ~ 93388550 (+) False G205404
TU232456 other downstream 531953 93371393 ~ 93388550 (+) False G205404
TU232452 other downstream 538295 93377735 ~ 93385888 (+) False G205404
TU232556 other downstream 562177 93401617 ~ 93402234 (+) True G205482

Expression Profile