RNA id: XM_021618510.2


Basic Information

Item Value
RNA id XM_021618510.2
length 2112
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC110533914
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 92841792 ~ 92845806 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGAGGAGATACATGGCCAGGTCCTGCAATACGACTGACAACACACAACTCCTACACAAAGCAACTCGGAAAGAGTAATACAAAAAACAAACAGCGGAGCCATTGAAGTAGCCTACAGAAAAGACTTCATGCAGACTCAGAAATAAGTTACCTTTTTCACTGGATAGACTAGTGAGGCTCACTGAGTCCCCCAGTCTCCACAACTTTTTTTGTCAACCTGTGAGCACCACGGACAGGGGAAAGGGGATTTGGGGAATTGTAAAACCTCTTCAAACACGTGAGACAGCACTGACCGACAGCACAGGGATGTCTGTCCACGCGTCCTGGCTACCAGTACCGCTGCTGGTGTGGGGACTAGTGTGTACCTCAGTGCGCACTGCCCCGTTTGCGGGTAGGCAGACCGACAATACAGAGCGCCATTGGGAAACGCTCTACTCTCGCTCCCTGGCTCGAAACCCATGGGAAAAAAGAGAAATCAACCGAGACGGTGACTATCTTACAGGCATCAAAAGACTTCGGCGTCTATACTGCAATGTCGGCATTGGGTTTCATATTCAAGTTTTACCAGACGGAAAGATAACTGGAATACATAACGAAAATAGATACAGTCTCCTTGAGATATCACCTGTGGAGAGAGGGGTTGTGACGCTCTTTGGCGTCCGAAGTGGTATGTTTCTGGCCATGAACAGCAAAGGGAAGCTCTATGGATCTGGTCATTACAATGATGAGTGCAAGTTCAAGGAGAATCTCTTGGCAAATAACTACAATGCTTATGAGTCAGCAGCTCACCCAGGGATGTATATTGGATTGAGTAAGACTGGCAAAACCAAAAAAGGAAATCGAGTTACACCAGCTATGACAGTAACACACTTCTTACCAAGGATCTGAATGACTCCAATGAGACTGTACCTTCAacaagggtagaggagagagactggaaaacAATGCACTTTCAAATGTTTTTCTAGAGTGAGATATTTAAGTTATTTATTTATGATTCCTGAGAATGTTTCTATTTTGGGAAAGTGGAGTAATGTAGAAAGAGGGGATGAACAATgacaattgttttgttttgtttgtgctGCTATGTGTCTTACGATGAGTGCTTTTTTTTTAAGAGTAAAATTGATTTtgcacttttttttaaagaactgtTGTGCAGCAAAGGTTGTTGTGCAGTAAGCATTGTCATCCTACTTGTACTACTTTGAAAGGAATTGGAGACCCACATTTGTCAGATTTGTGTCTCGGCATCAAAAAGGAAGATGATGATAGCAGGTTCAAAGCATTCAGTTCAGTACTGGTCCCATTATTTTTTAATTCCTAATTGATTTACTGTTTCACTACCTCATTATGGAGCTGCAAGGAGGGAttgtgttgttgctgttgttttgTCTTTCTGAGCATGACGTACAGTATGACGCAACCCACGCTTCTACACTTTACAATTCACCCGACACTGGATATCACTGATGAGATGGAATAGAGAGGAACCCAATCAGAGAGAGGGAATCGGAGTTCAGATTAGCACATCTGTTAACCCTGGTCTAAGTTTTAACTATATTTTTGTTGTGTGCATGTCTGGTTAAAACTCTTTTCATAaataacaaatgcacacacaaatGACTGGACCCTCTACTGCCACATTAGTGATTATTATAactttatatacatatataaagtTATCTATGACATTGTCACGTTGTAAGGTTTCCTGTATTTCAAATATATGTCTTGTTGTACTCAATGCCTGGTATGTGCAAATTAAACGAAGAAGAATGTAATTTCTTGTTTGGCACAGCGGATGCAGATAATGTACATATAATGTCAACTGAAACagggctctattcagtctgtatCGCTGAAGCATTACAaattaggatcttaatttgagccagtttgttacagcaggacaataatcctgcagcaataggaaatgtgaattgttattttgattataattaatgaacatttttGTAGGTGTTGATGCATTGTTGGTAAGGGAACTTCAGAagactttttaaacctcaaatatgcTAAAAGTTTAAAATGTCTCGCAATGCAGGAAAGGgtggtcaaattaagattctacatctctATGCAGTGTTTAAT

Function

GO: NA

KEGG:

id description
K04358 FGF; fibroblast growth factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232034 lncRNA upstream 2465 92839088 ~ 92839327 (+) True LOC110499942
TU231912 lncRNA upstream 58890 92782417 ~ 92782902 (+) True G204909
TU231840 lncRNA upstream 157653 92683845 ~ 92684139 (+) True G204840
TU231528 lncRNA upstream 158543 92682694 ~ 92683249 (+) True G204591
TU231666 lncRNA upstream 184546 92657038 ~ 92657246 (+) True G204704
TU232042 lncRNA downstream 100 92845906 ~ 92846227 (+) True G205028
TU232044 lncRNA downstream 1720 92847526 ~ 92847726 (+) True G205030
TU232048 lncRNA downstream 6850 92852656 ~ 92852864 (+) True G205034
TU232055 lncRNA downstream 22076 92867882 ~ 92868304 (+) True G205041
TU232069 lncRNA downstream 36226 92882032 ~ 92882335 (+) True G205050
XM_021577002.2 mRNA upstream 2352 92837196 ~ 92839440 (+) False LOC110499942
XM_036959199.1 mRNA upstream 41808 92696898 ~ 92799984 (+) False LOC110499936
trnap-ugg-3 mRNA downstream 189184 93034990 ~ 93035061 (+) True trnap-ugg-3
trnap-agg-3 mRNA downstream 192360 93038166 ~ 93038237 (+) True trnap-agg-3
trnap-ugg-4 mRNA downstream 194911 93040717 ~ 93040788 (+) True trnap-ugg-4
trnap-ugg-5 mRNA downstream 204510 93050316 ~ 93050387 (+) True trnap-ugg-5
trnap-agg-4 mRNA downstream 207728 93053534 ~ 93053605 (+) True trnap-agg-4
TU232035 other upstream 3665 92837424 ~ 92838127 (+) False LOC110499942
TU231530 other upstream 159437 92681346 ~ 92682355 (+) False G204593
TU231531 other upstream 159479 92681346 ~ 92682313 (+) True G204593
TU231132 other upstream 681889 92157275 ~ 92159903 (+) True G204240
TU230483 other upstream 817050 92021755 ~ 92024742 (+) True G203646
TU232439 other downstream 525587 93371393 ~ 93388550 (+) False G205404
TU232451 other downstream 525587 93371393 ~ 93388550 (+) False G205404
TU232456 other downstream 525587 93371393 ~ 93388550 (+) False G205404
TU232452 other downstream 531929 93377735 ~ 93385888 (+) False G205404
TU232556 other downstream 555811 93401617 ~ 93402234 (+) True G205482

Expression Profile