RNA id: trnap-agg-3


Basic Information

Item Value
RNA id trnap-agg-3
length 72
RNA type mRNA
GC content 0.47
exon number 1
gene id trnap-agg-3
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 93038166 ~ 93038237 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctcgttggtctaggggtatgattctcgcttagggtgcgagaggtcccgggttcaaatcccggacgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232276 lncRNA upstream 9058 93028907 ~ 93029108 (+) True G205255
TU232271 lncRNA upstream 20062 93017718 ~ 93018104 (+) True G205250
TU232269 lncRNA upstream 28340 93009597 ~ 93009826 (+) True G205248
TU232229 lncRNA upstream 62322 92975542 ~ 92975844 (+) True G205208
TU232228 lncRNA upstream 62902 92974983 ~ 92975264 (+) True G205207
TU232291 lncRNA downstream 9887 93048124 ~ 93067004 (+) True G205269
TU232315 lncRNA downstream 49026 93087263 ~ 93090300 (+) True G205291
TU232379 lncRNA downstream 140287 93178524 ~ 93195314 (+) True G205349
TU232505 lncRNA downstream 265420 93303657 ~ 93305171 (+) True G205433
TU232470 lncRNA downstream 298917 93337154 ~ 93337714 (+) True G205405
trnap-ugg-3 mRNA upstream 3105 93034990 ~ 93035061 (+) True trnap-ugg-3
XM_021618510.2 mRNA upstream 192360 92841792 ~ 92845806 (+) True LOC110533914
XM_021577002.2 mRNA upstream 198726 92837196 ~ 92839440 (+) False LOC110499942
XM_036959178.1 mRNA upstream 238182 92728556 ~ 92799984 (+) False LOC110499936
trnap-ugg-4 mRNA downstream 2480 93040717 ~ 93040788 (+) True trnap-ugg-4
trnap-ugg-5 mRNA downstream 12079 93050316 ~ 93050387 (+) True trnap-ugg-5
trnap-agg-4 mRNA downstream 15297 93053534 ~ 93053605 (+) True trnap-agg-4
trnap-agg-5 mRNA downstream 23449 93061686 ~ 93061757 (+) True trnap-agg-5
trnap-ugg-6 mRNA downstream 26001 93064238 ~ 93064309 (+) True trnap-ugg-6
TU232035 other upstream 200039 92837424 ~ 92838127 (+) False LOC110499942
TU231530 other upstream 355811 92681346 ~ 92682355 (+) False G204593
TU231531 other upstream 355853 92681346 ~ 92682313 (+) True G204593
TU231132 other upstream 878263 92157275 ~ 92159903 (+) True G204240
TU230483 other upstream 1013424 92021755 ~ 92024742 (+) True G203646
TU232439 other downstream 333156 93371393 ~ 93388550 (+) False G205404
TU232451 other downstream 333156 93371393 ~ 93388550 (+) False G205404
TU232456 other downstream 333156 93371393 ~ 93388550 (+) False G205404
TU232452 other downstream 339498 93377735 ~ 93385888 (+) False G205404
TU232556 other downstream 363380 93401617 ~ 93402234 (+) True G205482