RNA id: trnap-agg-5


Basic Information

Item Value
RNA id trnap-agg-5
length 72
RNA type mRNA
GC content 0.60
exon number 1
gene id trnap-agg-5
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 93061686 ~ 93061757 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctcgttggtctaggggtatgattctcgcttagggtgcgagaggtcccgggttcaaatcccggacgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232276 lncRNA upstream 32578 93028907 ~ 93029108 (+) True G205255
TU232271 lncRNA upstream 43582 93017718 ~ 93018104 (+) True G205250
TU232269 lncRNA upstream 51860 93009597 ~ 93009826 (+) True G205248
TU232229 lncRNA upstream 85842 92975542 ~ 92975844 (+) True G205208
TU232228 lncRNA upstream 86422 92974983 ~ 92975264 (+) True G205207
TU232315 lncRNA downstream 25506 93087263 ~ 93090300 (+) True G205291
TU232379 lncRNA downstream 116767 93178524 ~ 93195314 (+) True G205349
TU232505 lncRNA downstream 241900 93303657 ~ 93305171 (+) True G205433
TU232470 lncRNA downstream 275397 93337154 ~ 93337714 (+) True G205405
TU232438 lncRNA downstream 315978 93377735 ~ 93388550 (+) False G205404
trnap-agg-4 mRNA upstream 8081 93053534 ~ 93053605 (+) True trnap-agg-4
trnap-ugg-5 mRNA upstream 11299 93050316 ~ 93050387 (+) True trnap-ugg-5
trnap-ugg-4 mRNA upstream 20898 93040717 ~ 93040788 (+) True trnap-ugg-4
trnap-agg-3 mRNA upstream 23449 93038166 ~ 93038237 (+) True trnap-agg-3
trnap-ugg-3 mRNA upstream 26625 93034990 ~ 93035061 (+) True trnap-ugg-3
trnap-ugg-6 mRNA downstream 2481 93064238 ~ 93064309 (+) True trnap-ugg-6
trnap-agg-6 mRNA downstream 5557 93067314 ~ 93067385 (+) True trnap-agg-6
XM_021577034.2 mRNA downstream 7079 93068836 ~ 93084885 (+) False ric8a
XM_021577024.2 mRNA downstream 7084 93068841 ~ 93084885 (+) True ric8a
XM_021577061.2 mRNA downstream 209198 93270955 ~ 93335518 (+) False LOC110499974
TU232035 other upstream 223559 92837424 ~ 92838127 (+) False LOC110499942
TU231530 other upstream 379331 92681346 ~ 92682355 (+) False G204593
TU231531 other upstream 379373 92681346 ~ 92682313 (+) True G204593
TU231132 other upstream 901783 92157275 ~ 92159903 (+) True G204240
TU230483 other upstream 1036944 92021755 ~ 92024742 (+) True G203646
TU232439 other downstream 309636 93371393 ~ 93388550 (+) False G205404
TU232451 other downstream 309636 93371393 ~ 93388550 (+) False G205404
TU232456 other downstream 309636 93371393 ~ 93388550 (+) False G205404
TU232452 other downstream 315978 93377735 ~ 93385888 (+) False G205404
TU232556 other downstream 339860 93401617 ~ 93402234 (+) True G205482