RNA id: XM_021577085.2


Basic Information

Item Value
RNA id XM_021577085.2
length 4276
RNA type mRNA
GC content 0.50
exon number 8
gene id LOC110499989
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 93477061 ~ 93606905 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agaggagagaggcaccGGCAGATGCTGAAACTGTTACTATTACTACCACCATCGCTACTAGTGTATCCATTACAGTCAGTGCTTCTATAAGAGCATTTCTCTAGTACAACCAGCTGGAGCTTTTCTGTGGTTGTCTGTGAACGACTGTGTGGGTTTGTTTacgactgtgtgtgtgaatgagtgtgtgatgCCCTGTACAGAGTGACTGATGAGAACGGGTGCACTGGTCTGGAGGGTGACCCCGTCCGTACAGTTCCACTGCCGCTGCTGTCGCTCGGGGACGATTGGACGTCCGGCGTTGCCACGACGACTAGAATGGGCTGCAATCTGTGCACTTTACAGAAACGAGAGGAACACTATAAGCTGCTGTATGAGATCGCACAGGTGAATGGGAAGGACCTCTCCAAGGCCAGTCATGACGAGGCAGTGGAGGCGATCCGCTCTGCTAAGGACCCCATTGTGGTGCAGGTGCTCAGGAGGAACCCTGTTAGCCACGGAGGACATGTTGGCTCCACTCAGGAAGTGCACGTGGTGGACGTTTGCACGCAGACAGACATCACCTTCGAACACATCATGGCCCTGGCCAAGCTCCGAGCCACCACCCCTCCCGTGCCTGACATCTGCCCTTTCCTGCTGTCTGACAGTTGTCACTCTCTCCACACTATGGAGCAGGAGTTCTATGAGGGGACAGACTACCTCTCCACCCTCCCAGACcaacagaggacagaggagttTGAGTACGAGgaGGTGGAGCTGTGTCGACTCAACAGCCAGGAGAAGCTGGGCCTGACGTTGTGCTACAGGACAGATGAGGAGGAGGACATGACCATCTACGTCAGCGAGGTTGGGCCAAACAGCATCGCTGCAAGGGATGGACGCATCAGAGAAGGAGACCACATTTTACAGATCAATGGTCAGGATGTGCAGGACAGAAAGGAGGCTGTAGCGGTGCTCTCTAGTGAAGATACTAGGAAATTCGTACTGCTGGTTGCCAGGCCCGAGATACAgcTGGAGGAAGCATGGTTGGATGATGAACACAGTGAATTCCTGGAGCAACTGAAGATGGAAATGTTGGAAGAGcaacagagagaagagatggagctAGAGGCACTTCAGGAGAAGACCAAAGGAGAAGAGGATGACATCACTGCCACCTGTTCCTCCAGAACTCAGGACAGTGGGCTGGGGATGTCGTTAAGGAACAGCATCGACGCCCCCGACCACAACGCCCTCCTATCCCACATCCAACGGAGACTCTCCCAATGTCTGAGGGACAGACAGGACTGTCCCACGCGTCTGGacgaagaagaagaggaggaggagggggaagaggaggatgttgcaGAGGATGGAGATCGGTTCCAGCAGCTCCTGGAGCTGAAGTGTCAGATCCGTAACAGCGGCGAGTATGACCTGATCTATAGCAGACGCAGCACTATAGAGTGTAGGCTGGGAGAGCCAGCCGGTGGCGTGCAGCGTGAGCTCCGCATGCTCAATGACGAGCTCCGTAGCATCGAGCTAGAGTGCCAGAACATCATGCAGGCACACAAGCTCGGCAAGGGGCCGGTGGGGTCCCAGTGGAACCAGGGGCAGCAAGTGTTTCCCCAAATTGTCTGCCCCACACCTAAGGACCAAAGCTCCCACCTGGGGTGCAATGACTCACCTAGAAGAAGCAAGCTGGTGGACATCAACGAGTGTCCGGAGAAGCCGGAGAAGTCAGACAAGGACAGCTCGAGTGCCTACAACACTGCAGAGAGCTCTCGCAGCACGCCGCTGGCAATGGACCGCTCTCCTGAGCACTCCCTTCAGAGGAGGATGGTGACCATCACCAACCAGAGGAACCTCCGCAGCAGCATGGCCAGCCTCCACACTATAGCCAGCCCCAGCCCCAAACACCGGCCTCTCCACTGGGCCCCCATCCCAggcaaggccagcatcccagaccACAGCCTTTACCCCTCCGAGTCGGACAAGGTGTCCCCTGCAGACAACGAAAGGAGTGGGTTGGGGAACTGGAAGGTGAAGCCTCAGCCTCCTCCCAGGGCCTCCCAGATCCCTTACCTATCCCCGTCCCATGACTCCCAGCACCGCCAGCCCAACGGCAACATCCCGGCCCACGCTCGCCACTACCAGAGCTACATGCAGCTGATTCAGCAGCGCTCGGCTGCGGAGTACGCCCAGAGCCAGCTGAGCCTGCTCAGTGGGGTCAAGGAGCCCCAGCTGAGCCCCGCCATCGAGCCTAAGATGGAATGGAAGGTGAAGATCCGTTCGGACGGCACGCGCTACATCACCAAGAGACCAATCAGGGACAAGATCCTGCGGGAACGCGCCCTGAAGATCAAAGAGGAGCGTAGCGGAGGGATGACCACGGACGACGACGCTATGTCCGAGATGAAGATGGGGCGgtactggagtaaagaggagaggaagcaGCATCTGGTCAGGGCTAAAGAACAGCGGAGGAGACGAGAGTTCATGCAGCGCAGCCGACTGGAGAGCCTGAGGGAGAGTCCTCAGAGCAGCAACGAAGGACGCAAGGAGGTcagcatcatcgaactgagcCACAGGAAGATGATGAAGAAGCGCAACAAGAAGATCCTGGACAACTGGATGACCATTCAGGAACTGATGACTCACGGGGCCAAGGCCCCTGATGACCCCAGGGCCAAAGTACATAAGGCCTTCCTGTCAGTCACCACTGTATAATATACAACTAACACataacattctatagcagtgtTTCTCAACCGTATTGATACCAGGAACCAGCAAGCTATGGCCCTACCCCGGTGAGCAACATCCCAGGGACCGGTGCTGGTCTCCGGACTGGAATTTGAGAAACACTGATCTACAGTACCCCATGTGGTATTATATACTTGCCTCGTTCAATGTGGCGTTTTTATGAGGGCGATAGGAATATTTTTCACAACTTTGTTACCCGAAAAATAGCATTTTCTAAAGAATTTTAACCAATGGTTTCCATGGcattaaaaaaatctgtttttcatTATTTCTCTCTGTTCCAGAAACACTTTTGTATGAGATTACTGAGCAATTATTTTTCTTAGTTCATCCTGTAACTGTAATTACCTGCATAGTGTTCAATTATTTTCATATTTCTGTTCTGTTATGCAGTGATTCCAACCCACACAGGTCAGAATATTTGTATGTACTCCCTCAGGGGGAGAGGCGTTCAACTGAATGTACAGTACAGAAATCCTACTTCTTGCAGGTCTAGATTTGATAAACCAGCCATTTGATTTGTCCTTTAAAGGGACACTTCGGGATTTtggtatgaaggaagttagaggtaggtttccgagccaatgctaactagcgttagcgcaatgactggaagtctatgggtatcagCCAGCATGCTAGCagtttgggctcccgagtggcgcagtggtaaaaggcactgcatctcagtgctagaggcatcactacataccctgtttcgattccaggctgtatgacACCTGGCCATGATAGGGAGTCCCATAGGCCGGagaacaattggcccagagtcatcCGGTttagggtttgaccggggtaggccgtcattgtaaataagaatttgttcttaactgacttgcctggttaaatataaAAATGAAAAGTAAAAGATTACCATAGACTTAGTCATTGCGCTATTtacaacttccttcaaactgcacgcagagacataaaaatggtattcacaagttcatctgactctggggaagtagataaagtgcCTCTGCCAAAATACGAAGTTTCCCTTTAAAGGTCATGAACAGTCAAAATAATGTCTTTCATGAAATTGGATAATATTTGGATGAAACTAGATCAAGGTTCTtctacattgataaagtttgatcatagagtcactggtccccccccccccatgtcaaaAACTTGGATTCAGGAGGTGGGATTATTAAGGGGATAGGGTGACATCACTCTAACTctctcattttaatacaccaatggtaacatTATATTCTAttacctaatttaaataagtGCCGCCTTGTAACCAACATTGGAGAAGGTGTGTTTGCAGAAGGGCATGGTTTTTATAGTTAGATAGCTACTCTACTAGTGACAACATATCAGTGGGTTGGGTGTCAGCAAATACAATTAAACATTTACCCTATTCATCTATAATGGCAAAGATActtagttgaagtcagaagtttacatacaccttaggcaaatacatttaaactccgtttttcacaattcctgacatttaatcctagtaaaaattccctatcttaggtcagttagg

Function

GO: NA

KEGG:

id description
K15682 PDZRN3_4, LNX3_4; ligand of Numb protein X 3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233156 lncRNA downstream 1342 93475490 ~ 93475719 (-) True G206031
TU233155 lncRNA downstream 1655 93474433 ~ 93475406 (-) True G206030
TU233137 lncRNA downstream 26531 93450321 ~ 93450530 (-) True G206012
TU233136 lncRNA downstream 29977 93446807 ~ 93447084 (-) True G206011
TU233135 lncRNA downstream 31059 93445402 ~ 93446002 (-) True G206010
TU233240 lncRNA upstream 5916 93612821 ~ 93613033 (-) True G206111
TU233266 lncRNA upstream 55531 93662436 ~ 93663786 (-) True G206136
TU233297 lncRNA upstream 147196 93754101 ~ 93754705 (-) True G206167
TU233322 lncRNA upstream 152153 93759058 ~ 93759270 (-) True G206192
TU233346 lncRNA upstream 213246 93820151 ~ 93820585 (-) True G206215
XM_021577074.2 mRNA downstream 104109 93337897 ~ 93372952 (-) True LOC110499982
XM_036934431.1 mRNA downstream 277161 93176310 ~ 93199900 (-) True LOC118936876
XR_005038829.1 mRNA downstream 386596 93087261 ~ 93090465 (-) False LOC110499968
XM_036959225.1 mRNA downstream 595763 92869846 ~ 92881298 (-) True LOC110499952
XM_021576959.2 mRNA downstream 1037429 92398054 ~ 92439632 (-) False LOC110499897
XM_036959302.1 mRNA upstream 152738 93759643 ~ 93890433 (-) False LOC110502409
XM_036959293.1 mRNA upstream 152738 93759643 ~ 93925168 (-) True LOC110502409
XM_036959320.1 mRNA upstream 327510 93934415 ~ 94040658 (-) False LOC110499999
XM_036959326.1 mRNA upstream 327510 93934415 ~ 94085908 (-) False LOC110499999
XM_036959311.1 mRNA upstream 327510 93934415 ~ 94085913 (-) False LOC110499999
TU232213 other downstream 514127 92962044 ~ 92962934 (-) True G205192
TU231426 other downstream 1037460 92398060 ~ 92439601 (-) False LOC110499897
TU230896 other downstream 1688958 91787187 ~ 91788103 (-) True G204024
TU230773 other downstream 1886012 91589212 ~ 91591049 (-) True G203915
TU228979 other downstream 3035636 90377557 ~ 90441425 (-) True G202279
TU234006 other upstream 705519 94312424 ~ 94312774 (-) False G206742
TU234005 other upstream 705622 94312527 ~ 94312774 (-) True G206742
TU234008 other upstream 706485 94313390 ~ 94313918 (-) True G206744
TU234014 other upstream 721005 94327910 ~ 94328183 (-) True G206750
TU234576 other upstream 1010010 94616915 ~ 94617232 (-) True G207244

Expression Profile