RNA id: XM_036934440.1



Basic Information


Item Value
RNA id XM_036934440.1
length 1053
RNA type mRNA
GC content 0.56
exon number 1
gene id LOC118936880
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 93623033 ~ 93624085 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGTCTGGTCCCCAATGTCACCTACACAACCACGGGCACCTCGATGACAACGTGTCTGGTCCCCAATGTCACCTACACAACCACGGGCACCTCGATGACAACGTGTCTGGTCCCCAATGTCACCTACACAACCACGGGCACCTCGATGACAACGTGTCTGGTCCCCAATGTCACCTACACAACCACGGGCACCTCAATGACAACGTGTCTGGTCCCCAATGTCACCTACACAACCACGGGCACCTCGATGACAACGTGTCTGGTCCCCAATGTCACCTACACAACCACGGGCACCTCGATGACAACGTGTCTGGTCCCCAATGTCACCTACACAACCACGGGCACCTCGATGACAACGTGTCTGGTCCCCAATGTCACCTACACAACCACGGGCACCTCGATGACAACGTGTCTGGTCCCCAATGTCACCTACACAACCACGGGCACCTCAATGACAATGTGTCTGGTCCCCAATGTCACCTACACAACCACGGGCACCTCAATGACAACGTGTCTGGTCCCCAATGTCACCTACACAACCACGGGCACCTCGATGACAACGTGTCTGGTCCCCAATGTCACCTAGACAACCACGGGCACCTCGATGACAACGTGTCTGGTCCCCAATGTCACCTACACAACCACGGGCACCTCAATGACAACGTGTCTGGTCCCCAATGTCACCTACACAACCACGGGCACCTCGATGACAACGTGTCTGGTCCCCAATGTCACCTACACAACCACGGGCACCTCGATGACAACGTGTCTGGTCCCCAATGTCACCTACACAACCACGGGCACCTCAATGACAACGTGTCTGGTCCCCAATGTCACCTACACAACCACGGGCACCTCGATGACAACGTGTCTGGTCCCCAATGTCACCTACACAACCACGGGCACCTCGATGACAACGTGTCTGGTCCCCAATGTCACCTACACAACCACGGGCACCTCGATGACAACGTGTCTGGTCCCCAATGTCACCTACACAACCACGGGCACCTCAATGACAATGTGGCTGGTCCCCAATGTCACCAATTTAACTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU232691 lncRNA upstream 8294 93614493 ~ 93614739 (+) True G205599
TU232686 lncRNA upstream 19518 93603240 ~ 93603515 (+) True G205594
TU232678 lncRNA upstream 29281 93593474 ~ 93593752 (+) True G205586
TU232675 lncRNA upstream 32526 93590041 ~ 93590507 (+) True G205583
TU232651 lncRNA upstream 46346 93538181 ~ 93576687 (+) True G205561
TU232751 lncRNA downstream 101474 93725559 ~ 93726003 (+) True G205650
TU232766 lncRNA downstream 133234 93757319 ~ 93757529 (+) True G205665
TU232786 lncRNA downstream 172366 93796451 ~ 93798214 (+) True G205684
TU232810 lncRNA downstream 209430 93833515 ~ 93835840 (+) True G205706
TU232827 lncRNA downstream 232576 93856661 ~ 93925170 (+) True G205722
XM_036959279.1 mRNA upstream 246128 93373307 ~ 93376905 (+) True LOC110502396
XM_021577061.2 mRNA upstream 287515 93270955 ~ 93335518 (+) False LOC110499974
XM_036959260.1 mRNA upstream 287515 93308703 ~ 93335518 (+) True LOC110499974
XM_021577034.2 mRNA upstream 538148 93068836 ~ 93084885 (+) False ric8a
XM_021577024.2 mRNA upstream 538148 93068841 ~ 93084885 (+) True ric8a
XM_036934451.1 mRNA downstream 92004 93716089 ~ 93721762 (+) True LOC118936881
XM_021577124.2 mRNA downstream 521578 94145663 ~ 94149467 (+) False LOC110500011
XM_036959470.1 mRNA downstream 521668 94145753 ~ 94149467 (+) True LOC110500011
XM_036959421.1 mRNA downstream 526346 94150431 ~ 94172796 (+) False dnm1l
XM_036959424.1 mRNA downstream 526346 94150431 ~ 94172796 (+) False dnm1l
TU232556 other upstream 220799 93401617 ~ 93402234 (+) True G205482
TU232439 other upstream 234483 93371393 ~ 93388550 (+) False G205404
TU232451 other upstream 234483 93371393 ~ 93388550 (+) False G205404
TU232456 other upstream 234483 93371393 ~ 93388550 (+) False G205404
TU232452 other upstream 237145 93377735 ~ 93385888 (+) False G205404
TU232785 other downstream 171997 93796082 ~ 93798936 (+) True G205683
TU232791 other downstream 186275 93810360 ~ 93812169 (+) True G205688
TU233428 other downstream 316401 93940486 ~ 93941471 (+) True G206285
TU233546 other downstream 476894 94100979 ~ 94101872 (+) False G206389
TU233547 other downstream 476894 94100979 ~ 94101872 (+) False G206389

Expression Profile