RNA id: XM_036959293.1


Basic Information

Item Value
RNA id XM_036959293.1
length 6228
RNA type mRNA
GC content 0.48
exon number 25
gene id LOC110502409
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 93759643 ~ 93925168 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGACGCGGCAGAGACTCTGCTGCCTGTCAGTTTCTTCCCGGATCTGAGCTCCTGAGCGCCCGGAGATGCAGTGCTGTTGATCCAGGTGTGAGTCTTGAAGGTTAATCGGACGGACGGATCGTCTGCTATTGCAGGAAAAGCATCCTGTCCTGCTCATGTTCCATCATCGGCTTGGTTCTAATCATCACCTCCAGGGGGTTCTACACAGACCAACATGCTGCACTTCACTGtgctcctcctctgcctcctgtcCCTGACTCTCACTTCCACTGatGCATCAGTGTTCAGAGGGGAACCTAGCTTCTACTCAGacGATGCTACAGGTTACGGGCCGGTGTTTGAGGATCAGCCGGTCGACACCATCTACCCCGAGGAGTCACCTGAGGCCAAAATCACCATGAGCTGTCGAGCACGAGCCAACCCACCTGCCACATACACgtgGAGATTAAACAGCAGGAATATAGACCAGGATGAAGACAACCACTACACTTTGGTGGGAGGCAACCTGGTCATCTCTAACCCCATCAAGAACAAACACGTTGGGAAGTACACCTGTAAGGCCACCAACGACTACGGCACTGTGGTCAGCAGAGAGGCCGCTGTCCAGTTTGGATaCCTGGACTTCTTCtcctctgaggagagagaggcggTGTATGTGAAGGAGGGCCAGGGGGCAGTGCTGCTCTGCGCTCCTCCCCCACACTACCCAGACGAGCTGTCATTCCGCTGGATTCTGAATGAGTTCCCCGTCTTCATCCCTCTGGATAAACGTCGCTTCATCTCTCAGACTACGGGGAACCTCTTCATCTCTAAGGTGGACTCGTCTGACAGCGGAAACTACTCCTGCTTCGTCTCCAGTGCCTCCATTGCCAAGAGCGTCTTCAGCAAGTTCATCCCCCTCGTCCCCCTGGCTGAACgcccaaTAAGGAAGTACCCTGCTGATATCAAAGTCAAGTTCCCAGACACCTTTGCACTGGTGGGCCAGAACATCACACTGGAATGCTTCGCCCTGGGAAAccccatccctcagatCCGCTGGAGGAAGATGGACGGAGAGCTGCCGGCCAATCATGAAGTCAGTATGGCAGGGGCCCACCTCCAACTGTACCACGTGCAGTATGAGGACGAGGGGACGTACGAGTGTGAGGCCCTCAACTCCAAAGGGAAGGACTGGCACCGGGCTCGGGTCTCTGTAGAAGCCTTCCCAGAATGGACAGAGTCCATCAGCAGTACAGAGCGGGACATCAGCAGTGACTACACCATGTCCTGTGAGGCCAGCGGCAAGCCCAAGCCCCACGTCCACTGGCTCAAGAACGGCTACCCGTACGATAAGCATGATCTGAAGTTCAGAGGACTGACGTTTGAGGACTCTGGGATGTACCAGTGTAGAGCGGAGAATCGGCATGGAGTCGTCTATGCTGACGCAGAGCTGCGTGTGATTGCGTGCGCCCCTACGTTTGAGCATAACCCAGTAAAGAGGAGGATCCTGGGGGCCAAGAACAGCCGTGTGGTCCTAGAGTGTAGACCTAAAGCTGCTCCCAAAGCCTCCTTGTCCTGGAGCAAGGGCTCTGAACTCCTCTTCAACTCCAGCAGGATGTTAATCTGGGAGGATGGTAGTCTGGAGATCCTGAATGTGACCAGGGCAGACGAGGGGCGCTACACCTGCTTTGCTGAGAATGACCGGGGCAAGGCCAACAGCACAGGCTTCCTCTCTATCACAGAGGCCACTAAGATCACCTTGGCTCCGTCCAACGCGGACGTGACGGCGGGCGAGAGCGCCAGCATGCAGTGTGCCGCGTCACATGACTCAACGCTGGACATCACGTTCGTCTGGACCATGGACGGCCGCTCCATCGACTTCGACCGGGACGGGTCCCACTATGAACGCAACCCGAATGGTGGGTCCAGTGGAGAGCTGATCATCAAGAACACCCAGCTGAATCACTCTGGACGTTACACCTGCACCGCCCAGACCCCCGTGGACAACGTCTCCGCATCCGCTGACCTGGTCGTCAGAGgtcccCCTGGGCCTCCAGGTGGGGTACGTGTGGAGGAGATCAGGAACAAGAGTGTCCGTCTGatctggagcagtggagcagACAACCACAGCCCCATCTCTAAATACACCGTCCAATGCCGGGACTGGTTCTCTAAGGAAGACTGGAGAGATGCCACCACATCCCCTCCGGATGTGGAAGGCAATGCAGAGACAGCCACGGTGGTGGACCTGTTTCCCTGGACAGAGTATGAGTTTAGGGTGATAGCCACCAACACCCTGGGGACAGGAGACCCCAGCAGCCCCTCTCCCAAAGTCACCACGTTGGAGGCTGTTCCCGTGGTGGCGCCCTCAGACATTGGCGGTGGTGGCGGGACCAGCAAGGAGCTGACCATCACTTGGACGCCGGTGCAGCCGCAGTACTACTACGGCCGCAACTTTGGCTACATCATCGCCTTCAAGCCCCACGATGTCTACGAATGGATGAAGGTGACTGTGGCAGACCCCGAGGCTAAGCATTACGTCCACAAAGACTCATCCATCCCCGCCTCCACAGAGTTCCAGGTCAAAGTCAAGGCTTTCAACATTAAAGGAGAAGGCCCCTATAGTCTCACGGCTGTTATCTACTCTGCACAAGACGTGCCATCCGAAGCCCCTACCAGTGTGGAGGCCAGGGCGCTGTCTGCCACTGAGGCCATTGTGTGGTGGCTCCCTGTCACCCAGCACACTGTTGAAGGATACCAGGTGCGGTACTGGATgaaagtggaggacagagaggcaTCCAGTCAGAGAGTGGTGGTGTCCAGCAGAGAGAACCAGACAAGGTTGGAGAACATGAGGCCAAACTCCCCCTACCTTATAGAGGTCAGGGCCTACAATGCAGCCGGATACGGACCCCCCAGCCATCACTTCCAGATCTACACCAAAAAAGCCCCCCCAAGCCGGCCTCCTAAAATAATCAGTAAAAAGCTGAAAGGAACGTCAGTAAACATCGCCTGGGAACATGTCGAACCCTTGGCCAACGAGTCAACAATAGATGGATACAAGGTCTTGTACAGGAAGGCTGGCCTCTCCACAGGTTTACTGTATACCACAGGGAAGCGATCCATAGACCTGCCCATGCCCAGGGACGGGGACTGCGTAGTGGAGGTCAGGGCCTATAGCGAGGGAGGAGATGGGGCTGTGGCCCAAGTACGCATCTCAGGTGGAGCTGTCATGGTCACCCAGTCCCTCAGCCTGGCCTCTCTGCTCCTGGTGGCCATGTTGTGCCTGCTGGCCCTCTGAATGTAGTGCATCTTTCTCTGTCTACACTGCCCAGTCCAGCAAAGGAGACTCTGTGAGGTTGACGCCTATTATGACTTTGGTTCCCACAATCTTTGGTTTCACCCTGAAGGCCAAAGGATCATTTTCCCACCTCGAGGAATAGGGCTTTGTTTgtggagaagaaaaaaacacaATAAGAAATGTGTATAAAGGACGAAGAATGACATCTGGAATATCTCTTAAATCATACCTACAATGTCTTTGAAGGAGGAGCGTCAAAAGGAAGTCTTTCAACTTTTTCAATATGCCTTATATGTAAACAGTTACACTTATCTTTCACAATGCCATGACTTGCTCCTAACTGGGTGAGGTGTGAGTGCTGAAGCACTGCACAACGTCTGTAAGTAACTGTCAAATACATTGTGAGAAGGGCCTTTCTTGTTCATTCATAAAGGTGCAGTAGCTTGGAAGTGTGTGTTTCATTTGACGTGGGACATTTATGGATCATCGACACAACGTTTGCGTTCCACATATAAAGCATAAGCTAAGCAGGTGATATAGTTGTGAAGGATAAGTCTACAGGTTTACTAAATTGTCTTTATATTTCAATTACATTTCGGTGGCTTTTTCTTAGTACTTTTGAATACATTTTCTTTTCAAGGTGAAACATACCCTCCCCTTCCAGAGTCAAATCAAATCTCTACTCAAGGTCCTTGGCATATATCAGAGTTTTATTATCAAACATCATCAGACAAAAGAGGAATTTATGTCATGCCAATATAATATATGCAATAATGTTTATGGTTTTGCCATCTCACAAGTACATATAGCCTACTATTAACGATGTAACATCGTTGTTCCCTGAAACATTGATGTTATCTCccaaaaaaacatgcttatttcCAACTCATAACATTCTCTAAATTAATGGGAGACCAGTTTGCAAGTGTTTGCATGCATCTGAAAGAGTTTACTGACAAAACTTGATAAACTTCTTAGCCAGAGTGATGCCTGCATTTTTAGCACatgtacatgtgtgtttgtaaaAGTTGAATGTATTGAATAACTGTggaaatgagctttaaaacaTATCAGACCTGCAGTTTCTAACATGATATAAACAATGTGTAACGGTGGTGCATTTGGTTTGGTTGTCAGGACACCCAACTGTCCTGTGACCGTCGTGTGTCCAATGTTGTTAAAGTGTCCAATTGGAGGAACCATGATTCAACTGAGTTTGGAATCATAAATAGAATTCTAGAATGGGTATTTGCCATTCTTTTTGTCCTGTTCTTAGGATTCTATTGCTCTGGTTGGAATATCCCATGAAAGAGTACACGGATCACAAAAAGTTGTTTGTTTTGACTGTTGTTAAGACTTCAGTGGTAGACTATAAATGCTGGTGCTTTGTAAAGAATGCTGCCATCTTGTTCATGTCTTAACTGTTTTCTATGTTTTCATATCTTTATTAATCAACGTCTCAGTGTGAGTCTCAGTGCTAACAGTTCTGCAGTAATACATTATAACGTCTGTCTGAATCTTCAATCGTTCTTTCTATTTTATTACATATAACACAACCTGCCTAGCACCTAAAACAGTTATGCTATTATCGTGTATCATTGTGTATAAACTGGTGCAAAGCACAAGAGAAACAAAATAAACTATCGAAATCAATATCTGAGAATAACCATCCGAAGCTCATACATTTGTCCTACTATTTTTGCaacattgttttgtatttttttatcaatAACAAGAGTGTGATCAGAGTTATACTGTATACGGGATGCATTATCAtttggtgttgttgtttttgtttatgtTTGTGATTAATATATTTCATCCTGATGACCCACCACTGGTTCAACAGTAGATGTTTATTACGATCATGTACCACTGAAAGTTCTGTGTTTTTGATTGCTCTGCGGATACATGTTCAGTGTGACTGAGTGATGCTAGCCATTCTTCTACCAGCTCTGGCCCACAGAGTTACGTGTGGCTTGCTAACGCAAGGCTCAGGTATCTCCCTGGACCAGAAGCTACGCTCCTTCTATATACATTGTGACTATATCAACAAAACATCCACCACAAAGTGCTTTTTTCTCAGTTTCCCCTCATGCAACAAATCATCGAAAGTGTTGCCAAATGCATGAATGCCTTGAACATTTTTGTTATTTCGAAGGAAACGGTTGCTAAGAAAATGATTGCCATGGAAACGGTTGCTATTACTACATTCTCTAACATGCATGACATTGGAAACGAATGGTATAGGCCTGTATGGTAAAAAAACAACTCCATACATACATTGCAATGAGTCAACGTACAGTCATACATTCAGGCTTCCTATCGGCTTTATATGAACTCAACTGCCTTTGTGGTAAACAATAATAAACATTCATTCAGTCATGAGTGGAATCCCTTTATGTCAGAGACTGTATAATGTTTGCATACTGTACTTTCTCTAGATAAGCCTAACATGTTCATTAGTTGCCTCAAGCCAGTCATCTCAAGGGGAAGTCTATGTAGGGCAGTTTATTGTAGTTGTAAAATTACGAAATCTTTCAATAAATTACCTGATTTTTCCAGAAATACTCAAACTAGAATTTCTAGGAAAACTGGGAATTTGGGGGAAGGTTTCTGGAATTTTTCCATCATAATGGGGGGGGTTAAGGTTTTAGAGAGAAAAAACCTTAACTGGCTAAAGGAATCTCACTCATTCAGTAGGTTCAGTACTGGTCAGTCCTGCAGTCTCATTCCTTACTGTAAGATTGGTTGGGGTTTGATGACATTACCGCTGTGGTTGATGATGCAGCAGTGTTTGGCTGTATAATGTTCAGTGCTTTGCTCATACTGTAATGAATAGGAATCACACATGTTGAGAGGGAGGGGTGAAACTGGACTCTCTCATCGTCTGGACTTAAAAAGAACAATAAAATAATAGTTACTGTAACTATTAATTTAAGGTGAAA

Function

GO: NA

KEGG:

id description
K06759 CNTN1; contactin 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233322 lncRNA downstream 373 93759058 ~ 93759270 (-) True G206192
TU233297 lncRNA downstream 4938 93754101 ~ 93754705 (-) True G206167
TU233266 lncRNA downstream 95857 93662436 ~ 93663786 (-) True G206136
TU233240 lncRNA downstream 146610 93612821 ~ 93613033 (-) True G206111
TU233234 lncRNA downstream 154675 93604764 ~ 93604968 (-) True G206105
TU233760 lncRNA upstream 7119 93932287 ~ 93932778 (-) True G206563
TU233761 lncRNA upstream 9252 93934420 ~ 93939947 (-) False G206564
TU233770 lncRNA upstream 9252 93934420 ~ 93939947 (-) False G206564
TU233783 lncRNA upstream 9252 93934420 ~ 93939947 (-) False G206564
TU233785 lncRNA upstream 9252 93934420 ~ 93939947 (-) False G206564
XM_021577085.2 mRNA downstream 152738 93477061 ~ 93606905 (-) True LOC110499989
XM_021577074.2 mRNA downstream 386691 93337897 ~ 93372952 (-) True LOC110499982
XM_036934431.1 mRNA downstream 559743 93176310 ~ 93199900 (-) True LOC118936876
XR_005038829.1 mRNA downstream 669178 93087261 ~ 93090465 (-) False LOC110499968
XM_036959225.1 mRNA downstream 878345 92869846 ~ 92881298 (-) True LOC110499952
XM_036959320.1 mRNA upstream 9247 93934415 ~ 94040658 (-) False LOC110499999
XM_036959326.1 mRNA upstream 9247 93934415 ~ 94085908 (-) False LOC110499999
XM_036959311.1 mRNA upstream 9247 93934415 ~ 94085913 (-) False LOC110499999
XM_036959332.1 mRNA upstream 9247 93934415 ~ 94085913 (-) False LOC110499999
XM_036959340.1 mRNA upstream 9247 93934415 ~ 94085913 (-) False LOC110499999
TU232213 other downstream 796709 92962044 ~ 92962934 (-) True G205192
TU231426 other downstream 1320042 92398060 ~ 92439601 (-) False LOC110499897
TU230896 other downstream 1971540 91787187 ~ 91788103 (-) True G204024
TU230773 other downstream 2168594 91589212 ~ 91591049 (-) True G203915
TU228979 other downstream 3318218 90377557 ~ 90441425 (-) True G202279
TU234006 other upstream 387256 94312424 ~ 94312774 (-) False G206742
TU234005 other upstream 387359 94312527 ~ 94312774 (-) True G206742
TU234008 other upstream 388222 94313390 ~ 94313918 (-) True G206744
TU234014 other upstream 402742 94327910 ~ 94328183 (-) True G206750
TU234576 other upstream 691747 94616915 ~ 94617232 (-) True G207244

Expression Profile