RNA id: XM_036959392.1


Basic Information

Item Value
RNA id XM_036959392.1
length 6123
RNA type mRNA
GC content 0.47
exon number 27
gene id LOC110499999
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 93934415 ~ 94085913 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGAACTGGTGTTATAGAGAGATCGAGTCTCTGAACGGACGGACCAGGCAGCAACgaaaatacacacaggggaaatATATCAGTCTACTAGCCTACTGCAAGCACTTGGGAGAGAGAGTGCACCACAGAGACTGCAGGTTAGGTTGAAGAAGAACAGTGATTAAGAGGAGGATAGATTCTTGAAGAGGAGAGTGGAGTGGACTGGGTCTTCTCCGttgtAAATGTGCACGAGTTCGAGGCATTCTGATTGAGGAGAGAGGCGGGTCTTATCCGCGTCTGGGGGGGAGGACCTTCGTGTCAGATAACCAATCATGGAGAGGACGAGGACGAGGGCGGGTGCAGCAGTCTTCctgatgctgatcttgggtcaccTAGGCAATGCTCTGGAGGTCCCACTAGACCTGGCGCAGCCGCCAACCATAACTCAACAGTCCCCCAAGGATTACATCATCGACCCTCGGGAGAACATCGTCATCCACTGTGAGGCCAAAGGGAAGCCACatcccagCTTCTCGTGGACCAGGAACGGGATCCACTTTGACATTGACCAGGATCCCAAGGTGACGATGCGACCCCGGTCTGGTACCCTGGTGGTGGACATCAGTGGGGAGAAGGCCGAGACGTACGAGGGGGTCTACCAATGTACAGCCAGAAACAAACACGGGGCCGCAGTATCCAACAATATTGTCATCAGACAGTCCAGGTCCCCCTTGTGGTCAAAGGAGAGGAACGAGCCAATCAGAGTTCAGGAGGGCGAGGCTCTAGTGCTACATTGCCGGCCCCCTGCTGGCCTGCCCCCTCCTATCATCTTCTGGATGGACGTCAACTTCCAGAGACTGCCTCAGAGCAGCCGTGTGTTCCAGGCGTTGAACGGAGACTTGTACTTCTCCAACGTTCTGAAGGAGGACTCGAGGAACGACTACATCTGTTACGCCCGCTTCCCTCACACTCAGACCATCCAGCAGAAACAACCCATCACCCTCTTAGTGCTCAaccTGGATGCAGTCAATGAGACTGTTGCTGCTTTATTCAATGAAACTGATTTTTTTAGTGACGGCTCCGTGGAGGAGAGGAAACCCACTTTCCTCATCCCTTCTGGCTCCAGCAGCTCCAagatggtgctgagaggacaggtCCTGGAGTTGGAGTGCATCACTGAGGGACTTCCCACTCCAGAGGTCTCGTGGAGTAAGCTGAGTGGGGAGTTCCCTGACAAGCGCACCTCTATCGTGACCTTCCAGAAGATACTGCGTATCGTGAACGTGTCCGATGCCGACGCTGGCGAGTACCgctgcactgcccacaaccgcTTGGCCTCCATACACCACACCATCCGTGTCACCGTCAAAGCGGCACCGTACTGGATCACTACCCCCAGGAACCTGGTGCTGGCCCCTAGAGAGAAGGGTCAATTGATCTGTAGGGCCAGTGGTACTCCCAAACCCACCATCAACTGGGCCATGAATGGCATCCCCATAGAGAATTCACCTGAGGACTCCAATAGGAAGGTGGAAGGCGACACCATCATCTTCGAGGAAGTCCAAACTGGATCCAGTGCAGTCTACCAGTGCAACGCATCCAATGAATATGGATATCTGCTGTCCAATGCCTTCGTCAACGTTCTCTCTGAAACACCCAGAGTATTGACTCCAGCTAACCAGGTCTACCAGGTGATCCGAAACAACCACGCCTTGCTGGACTGTTCCTCCTTCGGCTCGCCCATCCCCAAAATCACATGGTTTAAGGACAGCCAGTCCAGCACCCTGGAAGGGGACCCCTACTTGCTGCATGAAAACGGGACTCTGGAGATATATGTGGCCCAGGCCTTCAACAGTGGGAAGTATATCTGTGTGGCCAGGAACACTCTGGGCATCGCTGAGAACCACGTCTATCTGGAGGTGAAAGagCCAACTCGTATCCTGAAGCAGCCGAAATACAAGGTGGCCCAGAGAAACATGAACGTGGTGTTTGAGTGTAAAGTAAAACACGATCCCACCCTCATCCCCATCATGATCTGGCTGAAAGACAACGGAGAGCTGCCCGATGACGAGAGATTTCTGGTGGACTCTGACAGCTTGACCATAACAGATGTGACAGAGAACGACGCGGGAACTTACACCTGCATAATGAATACTACTCTGGACCATGACTCTGCCAGTGCTGAGCTCACTGTCGTCGAACAACCAGACCCTCCTACTGACCTGGAGTTGACCGACATGAAACCCAGGAGTGTCCAGCTCACCTGGATACCTGGAGACGAACACAAAAGCCCTATTCACAAATTTGTGATCCAGTACACAGACTCTCTCCACGATCATGGCCACTGGCACAACCTGACGCATGTCCCGGGCAGCAAGACCACGGCCCACCTCGAACTGTCCCCTTACGTTCACTACTCCTTCAGAGTCCTGGCCCTGAACGCTGTGGGTCTCTCCGATCCCTCCAACCCCTCCCACATGTACAAGACCAATCCTGCAGCTCCAGATGAGAACCCCAGCGGAGTTAAAGGTTTTGGAACTGAACGTGACAATCTTATGATATTGTGGAAGCCACTGTCAGGCCTCCAGGCTAACGGTCCAGGCCTGCAGTACAAGGTGATGTGGAGACAGAAGGATGTGGACAAGAACTGGACGTCAGTGACCGTGGCCAACGTCTCCAAGTTCATGGTCTCTGGGACTCCCACCTTCACACCATACGAGGTCAAGGTTCAAGCCATTAACAACAACGGGATTGGCCCTGATCCAGCTGTGGTCACTGGACACTCCGGAGAGGACTTGCCGGTGCAGGCTCCAGACAGTGTCCAGGTCCTAGTGTTGAACAGCACCCTGGCTGAGGTGCACTGGGAGCCTGTCCCACCGAAGACAGTACGGGGACACCTCAAGGGATACAAGGTGTCTTACTGGCGTGAGAGGAGCCTCCACAAACACAACCCCCACCGTGTGGAGCAGCAGTTTCTGTCCTTCAGTGGGAACAAGAGTCATGGCATGCTCCCAGGCCTGCAGCCTTACAGCCTCTACCTGTTCAACATCAGGGTTTACAATGGCAAGGGGGAGGGCCCCGCCAGCTCCAACCTGCAGTTTGAGACCCCCGAAGGAGTTCCTGGGCCGCCATCTTTCCTGAGGATCACCAACTCTAACCTGAACAATTTGACTCTGGAATGGGGTCCTCCCAACGACCGCAACGGACACCTCACCGGCTACATCCTCAAATACCAGCAAGtCAACAACTCCAACGAGCTGGGTCCGATTGAAGAGCTGGCCCTGCCGGCCAACAAGACCTCCGTCACGCTCCCCAACCTCAAGTACAGCACACGCTACAAGTTTTATTTCAATGCCAAAACAGGCCAGGGAGCAGGGCCCGTCATTACAGAGGAAGCCATCACTATTATGGACGAAGCTATGCCATCCAGACAGGCTGACATCGCTACTCAGGGCTGGTTCATCGGCCTGATGTGTGCCATCGCTCTCCTCATCCTCGTCCTCCTCATCATCTGCTTCATTAAGAGGAATAAGGGAGGCAAATACCCAgTGAAAGAAAAAGAGGATGCTCACACAGACCCAGAGTTCCAGCCCATGAAAGAGGATGACTGTACTTTTGGGGAATACAGTGACACTGAGGACCATAAGCCGTTAAAAGGGAGCCGCACACCTTCTAACGGGACGGTGCACAGGGACAGCAGTGACGAAAGTTTAGTTGACTATGCAGGTGGAGATGGACAGTTCAACGAGGATGGGTCTTTTATTGGGCAGTACAGCGGAAAGAGCTCCATCAGGGAAACTGCTGAGGCCCACTCCCCGGTTAACACAACCGCTATGAACTCCTTTGTGTAGCCAGTCAACTGGTCAGCCAGGCCACTAGGTGGCGCTACAGTATATGCACCTTTTTTTGTGTAGCCAGGCCACTAGGCAGTGTTGCAGATTCTTATATATTCTTTGCGTAGCTAATTAGACGTTTATCCTCCCAGTCAATAGGAGACACTGCGGTGACTGTTCCATCCCCCCATATCACAGGGCAATCACATCATTGTGTggcttatcatcatcatcatcatcatcatcatcattacatgCCCCACCCATCTGCACCCAGAACCACCACTGAGAACCACCCTGCTGTCACAGACACATAAGATACACATTGGAGATACTAGATACTCCTGGAGGACTACGATTCTTATACAGTGCATGGAAATCCTGAAATTATGTACATACATATATTAACATATTGAGATTAACACTAATTAGTATATTACACAGAAGATATTGTCTATCTTGGACTACTATGCGGTTCACATTTGTATCATTTACCATATTGTTTTTACAGTCAAAGCGTTATCTTGATATTATTGTGTATGTTAGAGGTACTTTTTGTCCCTCAGGGCCACCATAAAGAGGCATCAATGTCTTTGTGGACCTAGTGGTGAAATGAGTTACTAAATGTATGGCTATTATTCTATGTATTTTTGCAAGATGGGCAGTTTGTACAGTTTATACAGTTGTTGTTGCAGAAAGGTTGAATTAACAGTCACATAATGAAAAGTTGAATTTACAGTAACAAAGGTAAAGGTTGAATTTACAGTAACAAAGGTAAAGGTTGAATTTACAGTAACAAAGGGAAAGGTTGAATTTATAGTAACATAGTGAAAGGTTGAATTAACAGTCACATAGTGAAAGGTTGAATTTACAGTAACAAAGGTAAAGGTTGAATTTACAGTAACAGAGGTAAAGGTTGAATTTACAGTAACAAAGGTAAAGGTTGAATTTACAGTAGCAAAGTTAAAGGTTGAATTTAAGGTAACAAAGGTAAAGGTTGAATTTACAGTAGCAAAGGTAAAAGTTGAAATTACAGTAACAAAGGTAAAGGTTGAATTTGCAGTAACAAAAGTAAATGTTGAATTTACAGTAACAAAGGTAAAGGTTGAATTTACAGTAACAAAGGTAAAAGTTGAATTTACAGTAACAAATGTAAAGGTTGAATTTACAGTAGCAAAGGTAAATGTTGAATTTACAGTAACAAAGGTAAAGGTTGAATTTACAGTAACAAAAGTAAAGGTTGAATTTACAGTGCAGGATtttgtacagtatgtatatgcagacagagagctcctaaatgtattattattttgctGCGAATGCAAATGCTGATGCTATACACGCCCTCATGACGTCATCCTCATGACCTTTGACCTGCATGTGACCTCATTTCCTGTGGTTTGCAACTCACATGATCTCACCTGATGGTGACCTTATGGCTCTTCTTGTCAGATGGTGACCTCATGGCTCTTCTTGTGGTGCGTGTGtccgtgtgcacgtgtgtgtgtgctgttgttGAGGGGATATTAGTCATGCTAGGAAAGAGGTGCTCACTCGTAGGAAGTACATTTGAGGTGACAAGGGTTCGCAAGCTATTTTCTTTTCTTAACTTGCATCAAGTTttacattgttgttgttgttttttttttacagaaatgtcgATTATTTGTTGAATTTGTAAATATATCATTTTGAATGTACAGAGAAACACAGCTAGAAGAGCTTAATTAAAGGGATGGTTCACCTAAATTACAAAATTTGATGACAACCTGAAAGGAAGAACTGCATGAAATAGTTTGAGAGAGCTGTGTTCAATATAggctactatatatatatatatatatatatatgtgtgcatttttttcttttttttttcttttttcttagCTGTGAACATTGTACTTTATTGTAACTAACAGGACAAATGTTGCccatgagttcaaatttgagttTTTTTCATTTGTCAGCAATTTAGTTGTGTATTTCTGAAATGTCACTTCTCTGTATTAAATGAAACCATACAGTACTCAGTAAACATTGAGATTTAATGTACTTTGGAGTGTTAGATAAGTACTATAATGTACTATAACATTGTGGTTTTCTGCTTCATGTGGGTTATTCAGCACAAAGTCTGCCAAACTCATCCACTTTGTGACAGTATTGCAAAACGGTTGTATTCTTATTCAAAAACAGTTTCAAGGTTTTTACTAACAATTTATGTCTCTTTTCATTTATATTTAAGTTTCTCCACTTATTGCAAGAATGAAGTGGAAATATAATGAATGAATAAAATATAATGATCTGCTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233760 lncRNA downstream 1637 93932287 ~ 93932778 (-) True G206563
TU233381 lncRNA downstream 52921 93879956 ~ 93881494 (-) True G206249
TU233378 lncRNA downstream 55279 93878155 ~ 93879136 (-) True G206247
TU233366 lncRNA downstream 82679 93850896 ~ 93851736 (-) True G206235
TU233346 lncRNA downstream 113830 93820151 ~ 93820585 (-) True G206215
TU233884 lncRNA upstream 2427 94088340 ~ 94088677 (-) True G206645
TU233830 lncRNA upstream 12323 94098236 ~ 94100426 (-) False G206605
TU233831 lncRNA upstream 12323 94098236 ~ 94099932 (-) True G206605
TU233917 lncRNA upstream 46936 94132849 ~ 94134112 (-) False G206669
TU233915 lncRNA upstream 47579 94133492 ~ 94134411 (-) True G206669
XM_036959293.1 mRNA downstream 9247 93759643 ~ 93925168 (-) True LOC110502409
XM_036959302.1 mRNA downstream 43982 93759643 ~ 93890433 (-) False LOC110502409
XM_021577085.2 mRNA downstream 327510 93477061 ~ 93606905 (-) True LOC110499989
XM_021577074.2 mRNA downstream 561463 93337897 ~ 93372952 (-) True LOC110499982
XM_036934431.1 mRNA downstream 734515 93176310 ~ 93199900 (-) True LOC118936876
XM_036959407.1 mRNA upstream 15035 94100948 ~ 94141281 (-) False LOC110500006
XM_036959412.1 mRNA upstream 15035 94100948 ~ 94141288 (-) True LOC110500006
XM_021577141.2 mRNA upstream 85968 94171881 ~ 94178540 (-) False LOC110500013
XM_021577139.2 mRNA upstream 85968 94171881 ~ 94180442 (-) True LOC110500013
XM_036959504.1 mRNA upstream 98286 94184199 ~ 94221104 (-) False LOC110500043
TU232213 other downstream 971481 92962044 ~ 92962934 (-) True G205192
TU231426 other downstream 1494814 92398060 ~ 92439601 (-) False LOC110499897
TU230896 other downstream 2146312 91787187 ~ 91788103 (-) True G204024
TU230773 other downstream 2343366 91589212 ~ 91591049 (-) True G203915
TU228979 other downstream 3492990 90377557 ~ 90441425 (-) True G202279
TU234006 other upstream 226511 94312424 ~ 94312774 (-) False G206742
TU234005 other upstream 226614 94312527 ~ 94312774 (-) True G206742
TU234008 other upstream 227477 94313390 ~ 94313918 (-) True G206744
TU234014 other upstream 241997 94327910 ~ 94328183 (-) True G206750
TU234576 other upstream 531002 94616915 ~ 94617232 (-) True G207244

Expression Profile