RNA id: XR_005038844.1


Basic Information

Item Value
RNA id XR_005038844.1
length 2758
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC118943611
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 93937585 ~ 93940374 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tacctatgatgaaaattacaggcctctctcatctttttaagtgggagaacttgcacaattggtggctgactaaatacttttttgccccactgtacatgcttAGTAAATGAATGTTTGCATACATAAGCATACAGTGAGGGCACTCATCCCAGTCCATATTAGCTCTAACTATCTGCAGTAATCTAGATATGCTTGCACTAGCATCCTCTAATCATTTTTCTAGACTGCTTGCTTTTCCAACCACGCATGCAAATATGAAGAACGGTGAAGCACTTTATTTATGTATAGCGTTTTGGAAACCTTATTTTGTACTGGTCCAGCTTTATCCCCAATTTATCTGATGGGTTTTGCTTTTGTATTTGCTATTATTACTTTTTGTATCATATATTTAAACATAAATATGTTATATAATATACATGATATGCTGTGATACATACATCTATAGATTATGGATATATAATGTTGTCTGATGTGCGTAATGTGGTGAAGATCTTATAAGAAAATTACTGTAGGCAATAATGTATTGGATGAAATCctagatatgtacagtatatgttatCCAGTATGAAGCTACTGTTGGAGGGACATGGCCAGCACTGAGAGTACTGTCAATCCCAGGGCTAAAAGGATGCTATTTAAAGTTTATACAAGGCTAAATGCTATTGTCCACATCATAACTCTATCTAGTTTGTGATCCTAACATGAGAGAAACTCTAATCTGTCCATTCAAATAAGAAAATAATAGACAATATAACACAGTTTAAATCGTTAAAAAAACAAGTATTAGATAATATATCACAAGGCTAAATGTATGATATTAGAGTGCCTTTGTGAAGAGATATCAATCTTTCCATCGATGCCATTATTCCAACCAAGGTGGACTAGAGCTTTATGTCAATAGAGACATAACAACCTAACTCTACTGACCTGTTCTGGTGTGACTGCAGTAAGTCCTGTACTATAACAACCTAACTCTACTGACCTGTTCTGGTGTGACTGCAGTAAGTCCTGTACTATAACAACCTAACTCTACTGACCTGTTCTGGTGTGACTGCAGTAAGTCCTGTACTATAACAACCTAACTCTACTGACCTGTTCTGGTGTGACTGCAGTAAGTCCTGTACTATAACAACCTAACTCTACTGACCTGTTCTGGTGTGACTGCAGTAAGTCCTGTACTATAACAACCTAACTCTACTGACCTGTTCTGGTGTGACTGCAGTAAGTCCTGTACTATAACAACCTAACTCTACTGACCTGTTCTGGTGTGACTGCAGTAAGTCCTGTACTATAACCACCTAACTCTACTGACCTGTTCTGGTGTGACTGCAGTAAGTCCTGTACTATAACCACCTAACTCTACTGACCTGTTCTGGTGTGACTGCAGTAAGTCCTGTACTATAACAACCTAACTCTACTGACCTGTTCTGGTGTGACTGAAGTAAGTCCTGTACTATAACAACCTAACTCTACTGACCTGTTCTGGTGTGACTGCAGTAAGTCCTGTACTATAACAACCTAACTCTACTGACCTGTTCTGGTGTGACTGCAGTAAGTCCTGTACTATAACCACCTAACTCTACTGACCTGTTCTGGTGTGACTGCAGTAAGTCCTGTACTATAACAACCTAACTCTACTGACCTGTTCTGGTGTGACTGAAGTAAGTCCTGTACTATAACAACCTAACTCTACTGACCTGTTCTGGTGTGACTGCAGTAAGTCCTGTACTATAACAACCTAACTCTACTGACCTGTTCTGGTGTGACTGCAGTAAGTCCTGTACTATAACAACCTAACTCTACTGACCTGTTCTGGTGTGACTGCAGTAAGTCCTGTACTATAACCACCTAACTCTACTGACCTGTTCTGGTGTGACTGCAGTAAGTCCTGTACTATAACCACCTAACTCTACTGACCTGTTCTGGTGTGACTGCAGTAAGTCCTGTACTATAACCACCTAACTCTACTGACCTGTTCTGGTGTGACTGCAGTAAGTCCTGTACTATAACAACCTAACTCTACTGACCTGTTCTGGTGTGACTGAAGTAAGTCCTGTACTATAACAACCTAACTCTACTGACCTGTTCTGGTGTGACTGCAGTAAGTCCTGTACTATAACAACCTAACTCTACCGACCTGTTCTGGTGTGACTGCAGAGTACTGCTAGGTGTCAGGCAAGGTAAGGAAGGGTACTGCTAGGTGTTAACCAAGGTAAGGAAGGGTACTGCTAGGTGTCAGCCAAGGTAAGGAAGGGTACTGCTAGGTGTCAGGCAAGGTAAGGAAGGGTACTGCTAGGTGTCAGGCAAGGTAAGGAAGGGTACTGCTAGACTGGTGTGAGAGGAGGAACCAAAGAGCTGCTATACTGTGATGTCTGTTAGATAAACAGTAACTAAAGGCTTGTTGTAAAATCCATCCCAGGATTACACCACTGTCCTTATGTGTCTTCTAAACGGTTATGAGATGTCATAAAGCCTACATAGTGATGTCATAACATATCATAGGATAATGTTTTTGTGCCATATGCAGTGATTTTGATCAGTTAACTGTAGATTGTAGCCTGATCCCGGTAGTCATTTTTATGCATTGTGATATAAGCTGACATAACCTGTTATGAATGGTAATAACACGTAGTAAATTATGAATAATCATTATTGAAGCTTTATGAAGGAGTGTTCACCTGCTATTCACTGTCAGGAATCATAACCTCACATCGATTTCAATGTTGTCTAactaatgttttaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233760 lncRNA downstream 4807 93932287 ~ 93932778 (-) True G206563
TU233381 lncRNA downstream 56091 93879956 ~ 93881494 (-) True G206249
TU233378 lncRNA downstream 58449 93878155 ~ 93879136 (-) True G206247
TU233366 lncRNA downstream 85849 93850896 ~ 93851736 (-) True G206235
TU233346 lncRNA downstream 117000 93820151 ~ 93820585 (-) True G206215
TU233789 lncRNA upstream 103 93940477 ~ 93941489 (-) True G206565
TU233769 lncRNA upstream 36400 93976774 ~ 94085891 (-) True G206564
TU233858 lncRNA upstream 98686 94039060 ~ 94039523 (-) True G206619
TU233884 lncRNA upstream 147966 94088340 ~ 94088677 (-) True G206645
TU233830 lncRNA upstream 157862 94098236 ~ 94100426 (-) False G206605
XM_036959293.1 mRNA downstream 12417 93759643 ~ 93925168 (-) True LOC110502409
XM_036959302.1 mRNA downstream 47152 93759643 ~ 93890433 (-) False LOC110502409
XM_021577085.2 mRNA downstream 330680 93477061 ~ 93606905 (-) True LOC110499989
XM_021577074.2 mRNA downstream 564633 93337897 ~ 93372952 (-) True LOC110499982
XM_036934431.1 mRNA downstream 737685 93176310 ~ 93199900 (-) True LOC118936876
XM_036959407.1 mRNA upstream 160574 94100948 ~ 94141281 (-) False LOC110500006
XM_036959412.1 mRNA upstream 160574 94100948 ~ 94141288 (-) True LOC110500006
XM_021577141.2 mRNA upstream 231507 94171881 ~ 94178540 (-) False LOC110500013
XM_021577139.2 mRNA upstream 231507 94171881 ~ 94180442 (-) True LOC110500013
XM_036959504.1 mRNA upstream 243825 94184199 ~ 94221104 (-) False LOC110500043
TU232213 other downstream 974651 92962044 ~ 92962934 (-) True G205192
TU231426 other downstream 1497984 92398060 ~ 92439601 (-) False LOC110499897
TU230896 other downstream 2149482 91787187 ~ 91788103 (-) True G204024
TU230773 other downstream 2346536 91589212 ~ 91591049 (-) True G203915
TU228979 other downstream 3496160 90377557 ~ 90441425 (-) True G202279
TU234006 other upstream 372050 94312424 ~ 94312774 (-) False G206742
TU234005 other upstream 372153 94312527 ~ 94312774 (-) True G206742
TU234008 other upstream 373016 94313390 ~ 94313918 (-) True G206744
TU234014 other upstream 387536 94327910 ~ 94328183 (-) True G206750
TU234576 other upstream 676541 94616915 ~ 94617232 (-) True G207244

Expression Profile