RNA id: XM_021577124.2


Basic Information

Item Value
RNA id XM_021577124.2
length 2403
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC110500011
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94145663 ~ 94149467 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTTCGTTTAGCGTAACGGAGCGTCAAAATAGAGCGACGCGATAACCGCTAGCCAACTGAAGTTATCCTTCGCAGTTCAGCAAAAAGACGCCACCAGCACCATGGCAACTGCACAGTCAGCGTTAACATTTGCAGTGTGTATCCTGATGATAACAGAGTTGATACTTGCCAAGAAGGACTACTATGACATACTGGGTGTGCGGAAAGATGCCAACGAGCGTCAGATAAAGAAGGCTTTTCACAAGCTGGCAATGAAGTATCATCCAGACAAGAACAAGAGCCCAGATGCTGAGACAAAGTTCAGAGGAATTGCTGAGGCATATGAAACATTATCAGATGAGAAGAGGAGACAAGAGTATGACCAGTTTGGTCACGGCACATTCTATAATGACATAACCAAAGACCGAAACGGTCCAAACGTCCACCAGCCCTTCAACTTCAACGACATGTTCAAGGACTTTGATATTTACAACCAGAACCGGCACTCCCATCACCAAAGGCACTTCGAGGATCACTTCCGGGCCCACCAGGAGGCCCACCACAGCAGACGCAAGAGACACTTCCAGGGTGTCTTTGGAGCAGCAGGTGGTGGTGGCGGCTTTGATGACATGTTTGACGACATGGAGAAGATGTTTACTTTTGACACGGACACTACTAAGCGGACGGAGAGCACATTTCAGGGTACTACAACGAAGCAACACTGCAGAACAGTGACACAGCGCAGGGGGAACATGGTCACCACGTACACTGACTGCACTGGCTCCTGAGGACAGAGGTCTTTTGTCGGTATCCACATCCTCTGGGTCGTGTTCATCAGGCACGAAATGGAAGAAAGCAGCCTGAAATGGGGAGGTActatctgaacttgtccaataagcaAGGCTTGTTTTCCATTGCATaacattttgaaatgtttctCTACGTTGTgctctaatgaacatgacccttgGCACAGCTTGCACATAGGCCCCTGTGGCGGGAGCAAGCTGTTTTTGTTGCTGCTGTGACCTAAGTGCTGGTCATTGCTATTTTGTTGAGTCACAGTAGCTAATGAAAACACTTTTTAGCACACTCAGTTTGTAATTTTTAACAATTTAATTACAGCACTGAAAAGCTTTTGAAGCATATTTCTCACACTATGGTTAGGAATGTAAATGTTGTAGAGAAATATTTTTTGGGTTGTGTTAAGTCTAATCTGGATCCAGATTTTTATTAGCTACTTAGAATTATATATATcattctatatactgtatatttcgaAACCCCCCCCTTAATATTTACATAGGATTTTTAAGGAGACGCTTTTCAGCTATTCATTATATAGTCCCTTGCAAACCTAAATATGCAATTGAACATAGTATCAGTATTGTTGCCTTAAGCAACTTCAATTGTTCAAGAGCAATTAATTTTTTTTCATGGGAGAATGTTTTCACTTGAGCTTTGTTATTGTAATTCGTCAGCCAAATAGTTTCAGTAACTACTACCACTGCTGAACCTAGACATTTTCTCTGTGCATGTAGTATTTTGTATAGCGTACAGCTCCATTGTGTGAATCCAGCAGCCTTTTGGTTGGAACAAAACAGTGTGGATAATGAACCGTGACAGGTTTGCTTTTGTTTGATAAATGGAGAACAACGTCTGCAAAAATGTTCCATCAGAACATGTACTGAAACTGTATGGCAGCATTTTGATGCTGCCTGAAGTtaccttttttttgtgtgttaagGGATGCTCGCCACTTTAAGTTGAAATTAGGAAAGAAATATTCAGATCGACAAGAACTTGTATTGGCAAAGATCATAACATGTAAACTACTTTTTGTTGATGTAGCTAGCTGCATTATGATTTTCACTCCGGAGGAACTTTAACATCTCATCTGCTGTCTGCATGGACCACTTTAATTTATAAGCTAACATTGGTGTAAATAAAATCCAGTGTTGCTCATCCAACACCTCATAACCACCCCGTTACCTCATGTTTCACTAGTCTATAGACTAGAAATATCTGTTCTCCTGGGCTTGTATTCAGAAATGTTCTCTGAGTAGGTGTgcttatctaggatcagttttgccttttttAGATCAACGTGAATAACATTTACATGGTAAGGCGGAACTGATCCTGGATCGACAGCAACCCTATTCCGAGACGCTTAATGAATATGTGCCCAAGTTTATGTCATGTGCAATATTTTAAAGCCAGCTCCTTTTGTAATGCGTATGTTTCGCCACTGTTACTAGCTGGCTTTGTCATTGTGATATGTTGATGTATGACCCATATAGCACTTTAGTTATTGTAATCCAATGGATAAAATGTGTGTTACCTTGACTGAAAATAGGGTATAGTCCTTTGAAAATGGAGGGGGGAAAAGGCTTCAGGAAATTAAAGATGAGAACAAACGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233588 lncRNA upstream 731 94144459 ~ 94144932 (+) True G206419
TU233587 lncRNA upstream 1842 94143584 ~ 94143821 (+) True G206418
TU233544 lncRNA upstream 45252 94098245 ~ 94100411 (+) True G206388
TU233531 lncRNA upstream 61464 94083754 ~ 94084199 (+) True G206377
TU233469 lncRNA upstream 155544 93989443 ~ 93990119 (+) True G206325
TU233590 lncRNA downstream 7957 94157424 ~ 94158198 (+) True G206421
TU233595 lncRNA downstream 24593 94174060 ~ 94177373 (+) True G206426
TU233616 lncRNA downstream 81637 94231104 ~ 94231961 (+) True G206447
TU233650 lncRNA downstream 123656 94273123 ~ 94273412 (+) True G206474
TU233651 lncRNA downstream 128067 94277534 ~ 94277752 (+) True G206475
XM_036934451.1 mRNA upstream 423901 93716089 ~ 93721762 (+) True LOC118936881
XM_036934440.1 mRNA upstream 521578 93623033 ~ 93624085 (+) True LOC118936880
XM_036959279.1 mRNA upstream 768758 93373307 ~ 93376905 (+) True LOC110502396
XM_021577061.2 mRNA upstream 810145 93270955 ~ 93335518 (+) False LOC110499974
XM_036959260.1 mRNA upstream 810145 93308703 ~ 93335518 (+) True LOC110499974
XM_036959421.1 mRNA downstream 964 94150431 ~ 94172796 (+) False dnm1l
XM_036959424.1 mRNA downstream 964 94150431 ~ 94172796 (+) False dnm1l
XM_036959430.1 mRNA downstream 965 94150432 ~ 94172796 (+) False dnm1l
XM_036959436.1 mRNA downstream 966 94150433 ~ 94172796 (+) True dnm1l
XM_036959574.1 mRNA downstream 114542 94264009 ~ 94268751 (+) True LOC110500081
TU233546 other upstream 43791 94100979 ~ 94101872 (+) False G206389
TU233547 other upstream 43791 94100979 ~ 94101872 (+) False G206389
TU233549 other upstream 43791 94100979 ~ 94101872 (+) False G206389
TU233551 other upstream 43791 94100979 ~ 94101872 (+) False G206389
TU233552 other upstream 43791 94100979 ~ 94101872 (+) False G206389
TU233702 other downstream 253124 94402591 ~ 94437682 (+) True LOC110500139
TU234120 other downstream 407702 94557169 ~ 94562224 (+) True G206850
TU234180 other downstream 482362 94631829 ~ 94632267 (+) True G206908
TU234200 other downstream 556479 94705946 ~ 94706248 (+) True G206926
TU235944 other downstream 2078326 96227793 ~ 96228463 (+) True G208404

Expression Profile