RNA id: XM_036959421.1


Basic Information

Item Value
RNA id XM_036959421.1
length 4374
RNA type mRNA
GC content 0.48
exon number 20
gene id dnm1l
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94150431 ~ 94172796 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcgccaattggatggaaaccaagCGCCAGTAACATTGGTGCATCATGACGTCAACGCTTgtaaatgtagtttatttttgtgcttgtttattttatttaaattgactgtaACTTTGATCGTTTCTCTATGTAAAAACTCAAAGTCCCATAATGCAACGCTGAATTTATTTTTTTTGCGCAGTTTTCGGGGCAGTATACATTGTGACCGTGTGAGGGACATTGGATGACTTTGTGCCTGGGTTGCTTTGTAGTTAGTCCATTTATTTGACAGGTACAGTCTTTCTTTCCCAGAGCTATGGAGGCCCTTATCCCGGTCATAAACAAATTACAAGATGTGTTTAATACGGTTGGCGCGGACATTATCCAACTGCCGCAGATTGCTGTTGTTGGAACGCAGAGCAGTGGGAAGAGTTCAGTGCTAGAGGCTCTGGTGGGGAGAGACCTTCTTCCCCGTGGTACTGGCGTTGTCACCCGTCGGCCCCTCATCCTCCAGCTGGTCCATGTGGACCCAGAGGACCGCAGGAAGACCAGCGAGGAGAATGACCCCAATGCTTGGAGAAACATGCGCCTTTACAAAGGTGTCGACGGAGAGGAATGGGGCAAATTTCTACACACCAAAAACAAGATCTACACAGACTTTGATGAAATCCGGCTCGAGATCGAAGCTGAAACGGAAAGAGTTTCTGGCAATAACAAGGGAATCACGGATGAACCCATACACCTGAAGATCTTCTCCCCTCACGTAGTCAACCTCACACTGGTGGATCTGCCAGGTATCACAAAGGTGCCGGTGGGAGACCAGCCCAAAGACATCGAGGTGCAGATCAAAGACTTGATCGTGAAGCACATCTCTAACCCCAACTCCATAATCTTGGCTGTGACTGCTGCCAACACAGACATGGCCACATCAGAGGCCCTCAAAGTGGCCCGCGAGGTTGACCCTGACGGCAGGAGGACGTTGGCTGTGGTGACCAAACTGGACCTAATGGATGCTGGGACAGATGCCATGGACGTACTGATGGGTCGGGTCATCCCTGTCAAACTGGGCCTCATAGGAGTGGTCAACAGGAGTCAGCTTGACATCAACAATAAGAAGACCGTGGCAGACGCCATCCGTGATGAATATGCCTTCCTACAGAAAAAGTACCCCTCCCTCGCCAGCAGAAATGGAACCAAATACTTAGCCAGAACGTTGAACAGGTTGTTGATGCATCACATTAGAGACTGTCTCCCGGAGCTGAAGACTCGTATCAATGTGCTGGCGGCCCAGTACCAGTCCCTGCTGAGTAGCTACGGTGAACCTGTAGAGGACCAGAGCTCTACTCTGCTGCAGCTCATCACCAAGTTCGCCGCAGAGTACTGCCACACTATCGAGGGCACCGCTAAGTACATAGAGACAACAGAACTGTGTGGAGGAGCACGAATCTGTTATATTTTCCATGAGACCTTTGGTCGGACGCTGGAGTCCGTCGACCCACTGGGAGGTCTGACCACCATAGACGTGCTAACAGCTATTAGGAACGCTACAgGCCCGCGGCCAGCCCTGTTTGTGCCTGAGGTGTCATTTGAGCTGCTGGTGAAGAGACAGGTGAAGAGACTGGAGGAGCCCAGCCTGCGCTGTGTGGAGCTGGTTCACGAAGAGATGCAGAGAATCATTCAGCACTGCAGCAACTACAGCACACAGGAGCTGTTGAGATTTCCTAAGCTCCATGATGCCATAGTAGAAGTGGTCACATCCCTCCTCAGGAAAAGGTTACCAGTCACCAATGAGATGGTTCATAACCTAGTGGCCATCGAGTTGGCCTATATTAACACCAAACACCCTGACTTTGCTGATGCCTGTGGCCTCATGAACAACAACATAGAGGAACAGAGACGTAACAGAATGAGAGAGCTACCCTCGTCTGTTCCTCGGGATAAGTCCTTTAAGGGCCCAGGTGTtcagtctctctcccccactgatcTTCCTCCCCCAGAAGGAGAAAGACCCCAGACTGCAGGCGGTGGTTCCCAGGGAGACCAGGAGGTGGGGACAGGGAACTGGAGGGGCATGttgaagaagggagaggagggggtcgGCGGGGACAAGTCCATGCTCCagacctctaaccctggcagcCCTCAGAGGGGCCACGCCGTCAACCTGCTGGATGTGCCTGTTCCCGTTTCCAGGAAGCTGTCGGccagagagcagagggactgTGAGGTCATCGAGAGGCTTATCAAGTCCTATTTCCTCATCGTCAGGAAAAACATCCAGGACAGCGTGCCCAAGGCGGTGATGCACTTCCTGGTGAACCATGTAAAGGACAGTCTGCAGAGTGAGCTGGTGGGGCAGCTGTATAAGGCTGGTCTGCTGGATGACCTGCTCACTGAGTCAGAAGACATGGCCCAGAGACGCAACGAAGCTGCAGACATGCTCAAgGCCTTGCAGAAAGCCAGTCAGGTGATCGCTGAGATCAGAGAAACACACATGTGGTGAGGGCCTCTACCTCcgtcctctccccccccccccacatggaCCATAAGCACTGAACCCTGTTCTGGACTGCAGAGACGGCCAACTTGGAAATACACTGGTGTCAATTTGTGTTTATTGAGTATCATCAATTCTCCATCCTCTTGAAGTTGTCACTTCCACACTCCCCTGTCATGGTTTTAAAAGCAATGGATGGGTGTAAAGCCTTGGCTGAAGGGAGTTTCAACCAAACCCATGACCGGGAGTGTAATACCACACACTTCTGGTAATGAGTGGAGAATGGGGATGCACATTTGAAAATAGTTGTAGATTGTATTATATGGACTTGACCTATTAACAGTATCAGTCTTCACCTGCACCACATCGCACACCAAAATGACCTTTCATATGTACGTATAGTATTATATTGATGAACGTGTGAGGTCTACCTACTGAATAATGTGGAGTTACATTAAAGATGTTTCCTCTAGTTTCTGGCTTGCtggtatgtatgtacgtatgCTGAGACTTGTAAATATTGTCTGTCTTCATCATGTTTGCTGATCTATTGTCTCACGTGTCTATGCTACTGCTGAAAATGTCCTTTACATGGTAACAATCTCTCATTTGTGTCGCTGATATTTACAAAGAGCCGAGAAATGCCACTCTGACGTAGAGTAAGCGTTATTTGTTGGTTGAAAAAGCACCATGATGCAACCGTACACTTCCATGTTCTCTGGGATTTCAACGTCTCTTCACCATCTTGTGTGTTATTTTGACTCGACCGTACGTCTGTCGCTAAATGTGTTTTAAGATATctagtgtatattgatgaggtCATTTGTCCTACTATATTGATTATGGATAATGATCATTTGTTGTCATACCGACAATACCATGTGGTAAACTATTTGTAGCAAAAGCAGGGCTGAATTGTGTGGCAACGTCTAACTTGAAGTGGCAGGTTTATTCCGTATATTCTCAAAAAGTGGTACCAGGGTTGAATGAGCCATTTTATTGACTTGTGATCCAGTCTGCTGTTATACCAGACGGAACAATGAACATCACGTATACAGACACATTATCATCATGGGCCGATCTCCAGTCATGGCTGTCTGCCCTCGACCATGGCGGCTGCTCCTTTTACCTCACACGGCCCATCTTCTTGCCTCGACCTTTGGCGCTGAGGGGTCAGGACAAGGTTAAGAAATCTCAATCACTTGGCAGCCAGGTCGTAAGCCCAGTAGTGAACGTCCCTGTTGCAGCACTTCACTGCACTCTGAGTCTAACGCTACACccagaagtgtgcacttgttctcACTCCCCCTCATGCAAGGGGGAGTCAGAGACTCTGGTGGAAAAAGTGGTCCACTTCTGGGTCAAGGGTGAATATGTTTAATGGTTTGTCAGTTACACGGGATTTGACTTCTTTTGGCTTGATGTTTATCATTAAATAGTTTGATTGTGCCGTAATTTCAGACCAGACCATGTTGGCAATTTACATCGTCACCACTTACAATGTCTTCAATCTATCGTGCAGTGATCATGCTATacgcaatgcacacacacacagatggacataGGCTGTGTAAGTGATGGTCATGGCTGTTTCTTTGGTTTCAATCTATGTGTGTTCCACTGGTCATTAAATGACCATCCCTGCTTGAGAGTTTGAAAGGAATGATGGGAAATGGAGTTGTTGATGGAATGgcaaccagtgactcagcccaatTCAAATGAAAACCACAATGCTGGGTCTTGTTCATTAGGCACAACATGGAAGAAACTGTTCTAAACTGTACTCTGTACTCGTCCAATAAGAGATGCTTGTCTGTTTATTAGTCTACGTGTTTTCATTTTCTTTTAATTTTGTACCCTAATAAACACGACTCAGAATTTCTTTGTCCTTCAAAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233588 lncRNA upstream 5499 94144459 ~ 94144932 (+) True G206419
TU233587 lncRNA upstream 6610 94143584 ~ 94143821 (+) True G206418
TU233544 lncRNA upstream 50020 94098245 ~ 94100411 (+) True G206388
TU233531 lncRNA upstream 66232 94083754 ~ 94084199 (+) True G206377
TU233469 lncRNA upstream 160312 93989443 ~ 93990119 (+) True G206325
TU233595 lncRNA downstream 1264 94174060 ~ 94177373 (+) True G206426
TU233616 lncRNA downstream 58308 94231104 ~ 94231961 (+) True G206447
TU233650 lncRNA downstream 100327 94273123 ~ 94273412 (+) True G206474
TU233651 lncRNA downstream 104738 94277534 ~ 94277752 (+) True G206475
TU233647 lncRNA downstream 137951 94310747 ~ 94311155 (+) True G206471
XM_021577124.2 mRNA upstream 964 94145663 ~ 94149467 (+) False LOC110500011
XM_036959470.1 mRNA upstream 964 94145753 ~ 94149467 (+) True LOC110500011
XM_036934451.1 mRNA upstream 428669 93716089 ~ 93721762 (+) True LOC118936881
XM_036934440.1 mRNA upstream 526346 93623033 ~ 93624085 (+) True LOC118936880
XM_036959279.1 mRNA upstream 773526 93373307 ~ 93376905 (+) True LOC110502396
XM_036959574.1 mRNA downstream 91213 94264009 ~ 94268751 (+) True LOC110500081
XM_036959567.1 mRNA downstream 97764 94270560 ~ 94300044 (+) False zgc:136858
XM_036959569.1 mRNA downstream 105344 94278140 ~ 94300044 (+) False zgc:136858
XM_021577251.2 mRNA downstream 105345 94278141 ~ 94300044 (+) True zgc:136858
XM_036959535.1 mRNA downstream 127373 94300169 ~ 94317655 (+) False LOC110500101
TU233547 other upstream 48559 94100979 ~ 94101872 (+) False G206389
TU233702 other downstream 229795 94402591 ~ 94437682 (+) True LOC110500139
TU234120 other downstream 384373 94557169 ~ 94562224 (+) True G206850
TU234180 other downstream 459033 94631829 ~ 94632267 (+) True G206908
TU234200 other downstream 533150 94705946 ~ 94706248 (+) True G206926
TU235944 other downstream 2054997 96227793 ~ 96228463 (+) True G208404

Expression Profile