RNA id: XM_021577139.2


Basic Information

Item Value
RNA id XM_021577139.2
length 1054
RNA type mRNA
GC content 0.49
exon number 12
gene id LOC110500013
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94171881 ~ 94180442 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTCTAAGGTGCTAACAATAGCTGGACAACCATAGGGCAGTGTAGTCACATGAGCAGGAAGGGAACACGCTATGTAGACTTGATGGCCAAACCTAAACCTGTTTGGATTCTGAACCCCAAAGAAGTGCAGCCTCTGTATTCatatccctcttctccctctatctctgcctTGGGCTCAGGGTTCAAATAAGACAAAATGTCAGACACAGAAGAAGTGGAGGAAGTGCAGGAAGAAGAAGATGGAGCCAAGCCCAAACCAAAGTTTGTGCCAAATATCACTGCACCAAAGATGCCTGATGGCGAGAAAGTGGATTTTGATGACATCCACAGGAAGCGTCAGGACAAGGACCTGTCTGAGCTCCAGTCTTTGATCGAGTCTCACTTTATCCAGAggaagaaggaagaagaggagctCATCAGTCTCGTCAACAGGATTgagAAACGTCGCGCAGAGAGGGCAGAGCAGCAGAGGGTTcgtgcagagagggagaaggagaggcaggcCAGGGTTGCGGAGGAGAAGGACAGGAAGGAGGCAGAGGATCAGCGTAGGAAGCAGGATGATGACATCAAGAAGAAGAAGGCTCTCACCAACATGACCCACCAGTATGGAGGAATCCAGCAGAAGAGTGAAAACCGCAAAGGAGCCaagaagcagacagagagagagaagaagaagaagattctTGCTGACCGAAGGAAACCTCTCAGCATCGACCATCTGAATGAGGACAAACTTAAGGAGAAGGCCAGTGAGATGTGGCAGCGAATGATGGAGTTGGAGGCAGAGAAGTTTGACCTCAGTGAGAAACTCAAGAAACAGAAGTATGATATTAATCAGCTTCTCACCCGGGTCCAGGACCACCAGAGCGCCAAAGGTCGAGGCAAGAAGATGGGCCGTGTGAGGTAAAAGGAGCAGCCGCCATGGTCGAGGGCAGACAGCCATGACTGGAGATCGGCCCATGATGATAATGTGTCTGTATACGTGATGTTCATTGTTCCGTCTGGTATAACAGCAGACTGGATCACAAGTCAATAAAATGGCTCATTCAA

Function

GO:

id name namespace
GO:0006937 regulation of muscle contraction biological_process
GO:0005861 troponin complex cellular_component

KEGG:

id description
K12045 TNNT2; troponin T, cardiac muscle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233922 lncRNA downstream 27102 94144456 ~ 94144779 (-) True G206674
TU233921 lncRNA downstream 28118 94143417 ~ 94143763 (-) True G206673
TU233920 lncRNA downstream 28648 94142744 ~ 94143233 (-) True G206672
TU233915 lncRNA downstream 37470 94133492 ~ 94134411 (-) True G206669
TU233917 lncRNA downstream 37769 94132849 ~ 94134112 (-) False G206669
TU233950 lncRNA upstream 3758 94184200 ~ 94186620 (-) True LOC110500043
TU233985 lncRNA upstream 92690 94273132 ~ 94273456 (-) True G206722
TU233988 lncRNA upstream 103685 94284127 ~ 94291287 (-) True G206725
TU234000 lncRNA upstream 127712 94308154 ~ 94308507 (-) True G206737
TU234001 lncRNA upstream 128528 94308970 ~ 94309192 (-) True G206738
XM_036959412.1 mRNA downstream 30593 94100948 ~ 94141288 (-) True LOC110500006
XM_036959407.1 mRNA downstream 30600 94100948 ~ 94141281 (-) False LOC110500006
XM_036959392.1 mRNA downstream 85968 93934415 ~ 94085913 (-) False LOC110499999
XM_036959504.1 mRNA upstream 3757 94184199 ~ 94221104 (-) False LOC110500043
XM_036959507.1 mRNA upstream 3757 94184199 ~ 94221104 (-) False LOC110500043
XM_036959491.1 mRNA upstream 3757 94184199 ~ 94221105 (-) False LOC110500043
XM_036959497.1 mRNA upstream 3757 94184199 ~ 94221105 (-) False LOC110500043
XM_036959489.1 mRNA upstream 7763 94188205 ~ 94220650 (-) False LOC110500043
TU232213 other downstream 1208947 92962044 ~ 92962934 (-) True G205192
TU231426 other downstream 1732280 92398060 ~ 92439601 (-) False LOC110499897
TU230896 other downstream 2383778 91787187 ~ 91788103 (-) True G204024
TU230773 other downstream 2580832 91589212 ~ 91591049 (-) True G203915
TU228979 other downstream 3730456 90377557 ~ 90441425 (-) True G202279
TU234006 other upstream 131982 94312424 ~ 94312774 (-) False G206742
TU234005 other upstream 132085 94312527 ~ 94312774 (-) True G206742
TU234008 other upstream 132948 94313390 ~ 94313918 (-) True G206744
TU234014 other upstream 147468 94327910 ~ 94328183 (-) True G206750
TU234576 other upstream 436473 94616915 ~ 94617232 (-) True G207244

Expression Profile