RNA id: XM_036959507.1


Basic Information

Item Value
RNA id XM_036959507.1
length 1417
RNA type mRNA
GC content 0.48
exon number 5
gene id LOC110500043
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94184199 ~ 94221146 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGTTGGACCACAAGCTTTCAATCGCTGACTTCTTAAATGCTCTCGATGGTTGTCCAAATTTCTGTCAACAGTCACGACTATTGGGACGGACTTGTAACTCGCAGGGCTGCTGCTGCCAGACAGTCCTTCCGGATGTCCAAGTACAAAGTCTTTGTGATGAGGCATGGAGAAGGAGCCTGGACCAAAGAGAACCGCTTCTGCAGCTGGGTGGACCAGAGGCTGAGCGAGGATGGGGTCAAGGAGGCTTTGGCGTGCGGTCACCTCCTGAAGGAAGCAGGCTACCAGCTGGATGTGGTATTTACCTCCCTGCTCAGCCGATCCATCCACACAGCCTGGCTGTTGTTGGAAGCCATGGGGCAGGAGTGGGTCCCCGTGGTCAGGACGTGGAGACTCAACGAGCGCCATTATGGTGCTCTGATCGGGCTGAATAGAGCTGAGATGGCCCTAAACCACGGTGAGGAGCAGGTGAAACAGTGGAGGAGGAGCTATGACCTCACGCCTCCCCCTATCGACGAATCACACCCTtacttcctggagatctacaatGACCGCCGGTATTCTACCTGTGACTTGTCTATAGAGTTTCTTCCGAAGTCAGAGAGCCTGAAGGATGTCTTAGAGAGGCTCCAGCCATACTGGGACGGCACCATTGTGCCGGAGATCAAACGGGGGAAATTGGTGCTCATCTCTGGGCACGGGAATAGCTGCAGGGCCCTGCTGAAACACCTGGAAGGTATATCAGATGCTGATATCGTCAATGTGACGTTACCCACTGGGACACCCATTCTGATTGAGCTGGATGAGAACTTCCGGCCCACCAAACCCATGCAGCTCCTGGGAGACCAGAAAGCCATCCAGGCAGCCATCAGGAAGGTGGAGGACCAGGGAGACAGTTGGAGTCAAGAGCAAATCTGTCACAAATGGTGTTGGATGTTAACAATATAAGAGGAAAACCCCTCAGGAAGAAGCTCCAACTGACGAAATGCAAGACTCTACTATGTGTATTCATAACACAAAATATCTCCATAACAACCACACACAAAATATCTCCATAACAACCACACACAAAATATCTTCATAACAACCACACAGGGTTCACGTTAGGTTTTAGGGGGAGGGAGTACAGGTTATTCATTTTGGTTGGTATTCAGAGTTGAGATCCTCACGTTTAACTCTTACTTTTGTGTAAATCCttcattgatgtcaatgggagacatgCGCCAAAATTTGAATACCATCTCAAAATACATATTAGTACtgtatttaaaaccctttataTTATTTTAGATTCTTGATGAAACGGCTTTTGCACAATCCCTTGTACGTCCTAATAGAATCAATGCTGTGAAAATGAAATTTGATCAACCACATTTGTAGGAAATAAACATCTGTTTGTCATGAAAGATATTTTAACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233922 lncRNA downstream 39420 94144456 ~ 94144779 (-) True G206674
TU233921 lncRNA downstream 40436 94143417 ~ 94143763 (-) True G206673
TU233920 lncRNA downstream 40966 94142744 ~ 94143233 (-) True G206672
TU233915 lncRNA downstream 49788 94133492 ~ 94134411 (-) True G206669
TU233917 lncRNA downstream 50087 94132849 ~ 94134112 (-) False G206669
TU233985 lncRNA upstream 52028 94273132 ~ 94273456 (-) True G206722
TU233988 lncRNA upstream 63023 94284127 ~ 94291287 (-) True G206725
TU234000 lncRNA upstream 87050 94308154 ~ 94308507 (-) True G206737
TU234001 lncRNA upstream 87866 94308970 ~ 94309192 (-) True G206738
TU234004 lncRNA upstream 90784 94311888 ~ 94312170 (-) True G206741
XM_021577139.2 mRNA downstream 3757 94171881 ~ 94180442 (-) True LOC110500013
XM_021577141.2 mRNA downstream 5659 94171881 ~ 94178540 (-) False LOC110500013
XM_036959412.1 mRNA downstream 42911 94100948 ~ 94141288 (-) True LOC110500006
XM_036959407.1 mRNA downstream 42918 94100948 ~ 94141281 (-) False LOC110500006
XR_005038844.1 mRNA downstream 243825 93937585 ~ 93940374 (-) True LOC118943611
XM_021577212.2 mRNA upstream 1262 94222366 ~ 94229545 (-) True LOC110500065
XM_021577199.2 mRNA upstream 11630 94232734 ~ 94243566 (-) True LOC110500060
XM_021577224.2 mRNA upstream 30314 94251418 ~ 94258833 (-) True LOC110500075
XM_021577304.2 mRNA upstream 127414 94348518 ~ 94359922 (-) False LOC110500125
XM_021577316.2 mRNA upstream 142911 94364015 ~ 94367194 (-) True LOC110500132
TU232213 other downstream 1221265 92962044 ~ 92962934 (-) True G205192
TU231426 other downstream 1744598 92398060 ~ 92439601 (-) False LOC110499897
TU230896 other downstream 2396096 91787187 ~ 91788103 (-) True G204024
TU230773 other downstream 2593150 91589212 ~ 91591049 (-) True G203915
TU228979 other downstream 3742774 90377557 ~ 90441425 (-) True G202279
TU234006 other upstream 91320 94312424 ~ 94312774 (-) False G206742
TU234005 other upstream 91423 94312527 ~ 94312774 (-) True G206742
TU234008 other upstream 92286 94313390 ~ 94313918 (-) True G206744
TU234014 other upstream 106806 94327910 ~ 94328183 (-) True G206750
TU234576 other upstream 395811 94616915 ~ 94617232 (-) True G207244

Expression Profile