RNA id: XM_021577212.2


Basic Information

Item Value
RNA id XM_021577212.2
length 1215
RNA type mRNA
GC content 0.42
exon number 8
gene id LOC110500065
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94222366 ~ 94229545 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgaatgagtaggtgttctaaacttctaacttttgaccggtagtgtacatctaTCTTTTAATTCTTATAATAAACCGTCCGGGTACAGTGTGATCATTATTCATTTCCAAGCGACATGGCATTGTACAGTTAGTTATGTGACACGAATCAAATTCTCTGAAGTGCTCTTGGTTGTGTTCACCAAATATAATGTATCACTTACATAGATTTATTTACACTCTCAAATAacatgtagtagaatataaagtaTCACCACCAAAACTCAAATCAAGTTACTATGTGTGGAAGGTCACACATAATAAGAATGGTGAGGACAGAAGGTCTATTTTGGTGAGCCACTCACATGAGGTCCAGAATCTATATAGTAACCCACTTTTCATCCCTCCAGCCTCACAAAGACAACTAGTAACGTTACAGTAGCTTTTCTTCACCTGAAAGGAGACACAGAGAACCGCAACCATGTCTGAAGCGCCGCCAAAACCAAAGTCGAAGATCTCTGCATCTCGCAGACTCTTCTTGAAGACCAAGCTGGTGAAGAAGGCCATGGCTATGTTGATGGCTGAAAAGGAGCAGAAGGTGATTGACAGAGAAAGCACACTGAGTGAACGAGTCCCAGGACTCAACCTCTCTGGGCTGTCTGTACAGGACCTGCAGACTCTTTGTAAAGAACTGCACCAGAAAAttgatgttgttgatgaagaGCGGTACGACATCGCAATGAAAGTCTCCAAAAGTGACGCAGAGATTGAAAATCTGACCATGAAGATCATTGAGCTGAAGGGCAAGAAGCGACCTCAGCTGAAGAGGGTGAGAGTATCAGCTGAAGCCATGATGGGGGCCCTGCTGGGAGCCAAGATCAAAGAGTCTGTCGACTTCAAGGCCAACCTCAAGACTGtcaagaaggaagaggagaagAAAGAGGAAGTGACTGATTGGCGTAAGAATGTGGATGCCATGTCTGGCATGGAGGGCAGAAAGAAGATGTTCGCTGCTTCCTAATAGCCACGGGTGGAACGATGACATCATTATGACTTCTCAGTGTTTTAACTTACATTATGACAGTCAAGGAACCGAGTTAGTTTGCATGGTTTTACATAGCTACAGAGTCTCTTGCGTTGTTATGTGTACATATGTTTTGTGTGTGCACGCAAATCACATTTATATCATATGATAATTATAGTCACTCAATGGAAAATAATGTTTTATCTTTATGGAA

Function

GO:

id name namespace
GO:0005861 troponin complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233950 lncRNA downstream 35746 94184200 ~ 94186620 (-) True LOC110500043
TU233922 lncRNA downstream 77587 94144456 ~ 94144779 (-) True G206674
TU233921 lncRNA downstream 78603 94143417 ~ 94143763 (-) True G206673
TU233920 lncRNA downstream 79133 94142744 ~ 94143233 (-) True G206672
TU233915 lncRNA downstream 87955 94133492 ~ 94134411 (-) True G206669
TU233985 lncRNA upstream 43587 94273132 ~ 94273456 (-) True G206722
TU233988 lncRNA upstream 54582 94284127 ~ 94291287 (-) True G206725
TU234000 lncRNA upstream 78609 94308154 ~ 94308507 (-) True G206737
TU234001 lncRNA upstream 79425 94308970 ~ 94309192 (-) True G206738
TU234004 lncRNA upstream 82343 94311888 ~ 94312170 (-) True G206741
XM_036959490.1 mRNA downstream 1220 94188205 ~ 94221146 (-) False LOC110500043
XM_036959482.1 mRNA downstream 1259 94188205 ~ 94221107 (-) False LOC110500043
XM_036959491.1 mRNA downstream 1261 94184199 ~ 94221105 (-) False LOC110500043
XM_036959497.1 mRNA downstream 1261 94184199 ~ 94221105 (-) False LOC110500043
XM_036959504.1 mRNA downstream 1262 94184199 ~ 94221104 (-) False LOC110500043
XM_021577199.2 mRNA upstream 3189 94232734 ~ 94243566 (-) True LOC110500060
XM_021577224.2 mRNA upstream 21873 94251418 ~ 94258833 (-) True LOC110500075
XM_021577304.2 mRNA upstream 118973 94348518 ~ 94359922 (-) False LOC110500125
XM_021577316.2 mRNA upstream 134470 94364015 ~ 94367194 (-) True LOC110500132
XM_021577348.2 mRNA upstream 182699 94412244 ~ 94416157 (-) False LOC110500153
TU232213 other downstream 1259432 92962044 ~ 92962934 (-) True G205192
TU231426 other downstream 1782765 92398060 ~ 92439601 (-) False LOC110499897
TU230896 other downstream 2434263 91787187 ~ 91788103 (-) True G204024
TU230773 other downstream 2631317 91589212 ~ 91591049 (-) True G203915
TU228979 other downstream 3780941 90377557 ~ 90441425 (-) True G202279
TU234006 other upstream 82879 94312424 ~ 94312774 (-) False G206742
TU234005 other upstream 82982 94312527 ~ 94312774 (-) True G206742
TU234008 other upstream 83845 94313390 ~ 94313918 (-) True G206744
TU234014 other upstream 98365 94327910 ~ 94328183 (-) True G206750
TU234576 other upstream 387370 94616915 ~ 94617232 (-) True G207244

Expression Profile