RNA id: XM_021577224.2


Basic Information

Item Value
RNA id XM_021577224.2
length 3376
RNA type mRNA
GC content 0.38
exon number 9
gene id LOC110500075
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94251418 ~ 94258833 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATCCATAAATCTATCATCTCAAATCATAAAATactttttcctctcctctgtcctctgacactcctctcactctctctgattGTCCTCACCTTGAAGGTAACCTGACCGACAGTAGCCATGTCTGAAGGACCGAAAAAGCCAAAGTATTCGGCAACACGCCGACTGCTCCTAAAGACCAAACTGCTGAAAAAGGCAGGGATAATGCTGGTGGCTGAGTTTGCTGACAAGAAACGTGAAAGAGAGAGTGCTCTGAATGAGAGAGCCCCACCCCTCAAACTGTCTGGCCTGTCTGTGCAGGAGCTACAGGACCTTTGTAAAGACCTACACAAAAAGATTGATATCGTAGATGAGGCACGATATGACATGGAAATCAAAGTGGGGAAAAATGATTTAGAGATTAAGTCGCTGACCCAGAAGGTCGATGAGATTAAGGGGTCGAAGAAGCCTACTCTGAAGAGGGTGAAAAAGTCTGCCGCCGACGCCTTGTCGGGAGCCGTGGCCGACACTGGCAAAATGAAGGCTGACTTCACATCCGGCCTCAAGAAAGtcaagaaggaagaggagaagAAAGAAGAGGTGACTGACTGGCGTAAAAATGTGGATGCCATGTCTGGCATGGAGGGCAGAAAGAAGCTGTTTGATGCTGGAAAATAATCAGGGTCATGTTGTACCACCATTAAGAGAGAAGTATGCCAAGACTGTAAGAACCcacaaagaagagagagaggaggtcagtTCTAGATGAGATGTGAATTTCATGTTGTGATATGAAATGAATTTTATAAAGAATCATGTCAACCATGTCAATTTTACGTGTGTGTCCCCTGTTTAATGTGATATGAGAGTTTGCTAGTTCACAGGGAATATTGTTGATATtatatattgtagatatgttatagaTAGTTGTGTTATAAATTATGTGTTGATATAATCAGTTATTTATGATGTATTGGTAGTATCCCTTATGTAAAAAACACATGATTTCAAgtggaaaatcacatgatttcacatgtgaaatttccACGTTTTGCAGATGTAAAAGTGGTATGAACTATGTGGTTTTCGAACACTTCACATATGAGGATATTTCACATTCAATTTCACATGGATTTTCACGTGATCACATGATCTTTCACATGTGAACCAATgtggttttggaacacttcacatgtgattATATTTCACATGAAGTTTCACATGTGGATTCAAATGTTCACTTGTGTATATTTTTCACCTGAGATTTCACAGGTGATGATGCCCTGCATACAATAATTTGTCACAAAATAGTTGCAgtgttttcaacttacatatttgacacacatGATTATATTGTGCATGTTTATTTCAGTGGAggtgaggacggctcataataacagctagaaccatggaaaccatgtgtttgatgttgttgatacctttccacctattctgctccagccattaacaCGTGCCCATCCTCCCCAAGTATGGTACCACCAACTTCctgtatgtttatttatacagTAGTTATTATTCAACACAACCTTCCTGCCATGCCACTATGTCTGTGTCAAtgactgatttcacctgtattcctACACGCTGGACTTTAAGTTAATCTTAGCTTTGAATAATACACTCAAGAAAATCTATtatatttatcatagtgattcaCCAACAtcagacaactatacagaaaaccctcAAGTTGCTGAAATAAGTCAActaaatcaatgatgagagaatagtcagattaaaTGATAACTAAAATCTTAGTTATGCAGGGATGTATTACAGGAAATGAATGTGTAGGGGGGTTTCTGAGAATGGTACAGACTTTGTGGTGCAGCAGAAGGATCAGCGTAGCCCAATTCCCAGTTGGGGTCATATTGAAAAGTCTACTAAGTGATCATGTAAAATGTAATAATTTTTCTATTGGTGAAAGATTTTTGCACTATTTCAGCTGAGCAGCGTACCATTTACCTTAACCCCCACTACCATTTCATTACttccctaacaaacaaaacatgtGAAAGgtgcagtttcacatgtgaaaccatGTATGTTACATTTAGAGTTCATAATTTAACACCTACTTTTCACATGTGACGAGAATAACATTTTGTGAAATTTGCAGATTCACATGTGAAATTTGCAGTTCCACATATGAAAaactttcacatgtgaaaattaAATTCAGCATTTTAATGTGAAAaactttcacatgtggaattgcattTTCAATGTGAAAATCGAATTTGTCACGGTCTTCATCGTTGACTTCTATTTTAGGATAATATGATGATTTCACTTGCCCGAGGTCATTCATTATCCACCTACAAAACATTCTCAGTCCACTCCTTATACGTGTATGTGGAATAAGTACAAACTAAGTGTACGGTCATGTGGTTCACTAGCCTGTTCCGGTTCTGTATAGCAGAATGTATAGCCAACCCTTCTATTGTTGTCATGACATATGAGGCAAGCTGCATTGCATTAAACCTATATCTTACTTTACATTAGTCTTTCCCATCCCTGGgcccccagtacccccaacagtacacatgttTATTGGGACCCTGGACTAGCACCCCTGATTCAACGGatcctcaatgagttgaatgagttgaatgaggtgtgcTTATCCAGGGTCCCAACAACAatgtgttgggggtactggaggtccTGCATATGTGAAATTGCAAGTTCACATGTAAGAAATATTCACATGTGAACATTGAATTTGCAGTTTTACATGTGAAAAACGTTCAAATGTTATCACAGGTGTAGTGTCATGGCATCACATGTTGAAATTTGCATCCTcatgttgtcacatttatttaacttgagatcatgttttcacatgtgaaattcatgtgtttTTCCGTaagggattgtagttctgtaGGTGGATGGATAACTGTCAATATCATCTGAATAGATATTTCAGGTCAGAGCCAGGAATGTGATGATATTAACAGTATCTGTACAGTATCTGAAAAGTTGTATATTTTCAGTTGATTTAGCAAAATAAAAAAAGACGATCGCTACTGAGAGAGTGAAGCCAGGTTATTTTGATGTACAGACTTGGTGTAGCCGACACACATTTCATTTGACTGAATATACAGACTTGCTGTAGGCTACATTACATTTGACTGAATGTACAGACTTGGTGTAGCCTACATACATTTAATTTGACTGAATATACAGACTTGCTATAGGCTACATTACATTTGACTGAATGTACAGACTTGCTGGTGGCTACATTAAATTTGACTGAATATACAGACTTGGTGTACACACTGCTACATTTGACTGAATGGTTTAaaagtgatttatttatttgatatGAATGTAAATGCCACTCCACTATTTAATAAATAGAGCTTGATAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233950 lncRNA downstream 64798 94184200 ~ 94186620 (-) True LOC110500043
TU233922 lncRNA downstream 106639 94144456 ~ 94144779 (-) True G206674
TU233921 lncRNA downstream 107655 94143417 ~ 94143763 (-) True G206673
TU233920 lncRNA downstream 108185 94142744 ~ 94143233 (-) True G206672
TU233915 lncRNA downstream 117007 94133492 ~ 94134411 (-) True G206669
TU233985 lncRNA upstream 14299 94273132 ~ 94273456 (-) True G206722
TU233988 lncRNA upstream 25294 94284127 ~ 94291287 (-) True G206725
TU234000 lncRNA upstream 49321 94308154 ~ 94308507 (-) True G206737
TU234001 lncRNA upstream 50137 94308970 ~ 94309192 (-) True G206738
TU234004 lncRNA upstream 53055 94311888 ~ 94312170 (-) True G206741
XM_021577199.2 mRNA downstream 7852 94232734 ~ 94243566 (-) True LOC110500060
XM_021577212.2 mRNA downstream 21873 94222366 ~ 94229545 (-) True LOC110500065
XM_036959490.1 mRNA downstream 30272 94188205 ~ 94221146 (-) False LOC110500043
XM_036959482.1 mRNA downstream 30311 94188205 ~ 94221107 (-) False LOC110500043
XM_036959497.1 mRNA downstream 30313 94184199 ~ 94221105 (-) False LOC110500043
XM_021577304.2 mRNA upstream 89685 94348518 ~ 94359922 (-) False LOC110500125
XM_021577316.2 mRNA upstream 105182 94364015 ~ 94367194 (-) True LOC110500132
XM_021577348.2 mRNA upstream 153411 94412244 ~ 94416157 (-) False LOC110500153
XM_021577355.2 mRNA upstream 153411 94412244 ~ 94417008 (-) True LOC110500153
XM_021577457.2 mRNA upstream 267715 94526548 ~ 94529606 (-) False LOC110500221
TU232213 other downstream 1288484 92962044 ~ 92962934 (-) True G205192
TU231426 other downstream 1811817 92398060 ~ 92439601 (-) False LOC110499897
TU230896 other downstream 2463315 91787187 ~ 91788103 (-) True G204024
TU230773 other downstream 2660369 91589212 ~ 91591049 (-) True G203915
TU228979 other downstream 3809993 90377557 ~ 90441425 (-) True G202279
TU234006 other upstream 53591 94312424 ~ 94312774 (-) False G206742
TU234005 other upstream 53694 94312527 ~ 94312774 (-) True G206742
TU234008 other upstream 54557 94313390 ~ 94313918 (-) True G206744
TU234014 other upstream 69077 94327910 ~ 94328183 (-) True G206750
TU234576 other upstream 358082 94616915 ~ 94617232 (-) True G207244

Expression Profile