RNA id: TU234018


Basic Information

Item Value
RNA id TU234018
length 4218
lncRNA type sense_over
GC content 0.37
exon number 1
gene id LOC110500125
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94348518 ~ 94359922 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tacagatgtaggatcttaatttgatccatcTTTTGTTGATGATAATTTTCCTGCatggcaggaaatgcaaacttgtggtgtattcaaggtttaaaaaggcttttaaagTTAGTAATTTCTGCTTTAAAAATGTCAGATTTGATTTTCCCTAatgtaaaatgtatcaacccttacaaaaaatgccaattaattataatccacatttcctgttgctgcaaaattatttcctgctgtagaaaactagctcaaattaagatcctacatctgtagtagcAGAGTAGACCAGAGCATAATGATATAGACTGGCTGATTCTCGAAAAACATGTTAATACAAGTGGTttggtttcaaatcaaatcaaattgtattggtcacgtacacatatttagcaaacGTTATCGCAGATGCACCGAAATGTTTATGTTTCTATCGCCAACAGTGCAATATTACCTAgcaatggtgtgtatagacagtatggacagtatatgaatagaaaaggtgtgttcAGCAGTAGTTATACAGAATGGTGTGTAcagacatgattaaagtgaccagtgttccatgactaTGTAGATAGGGCAGCAGTTTCTGAGGTGCAGGGTAACCATTTGGATTCTTTGGTGTGACAGTTGAGAACCAATGCAGGTTTGATACTATTACGCAGTGGTGGAAAATGTACCCAgtagtcatacttgagtaaaagtcaagaaACCTTAACAGGAAATGACTCAagcaaaagtgaaagtcacccaataaaataatacttgagtaaaagtctgaaactatttggttataaatgtacttaagtatcaaaagtaaaagtataaacaatTAAAAAtcacttatattaagcaaaccagatggcacaattgttcatgtttttttttaatttacagatagccaacactcagacatcattcagaaacaaagcatttgtgtttagtgatttCGCCAGGTCAAAGGCAGTCGAGATGACTTAAGGATGTTCCCTTAAGAAGTACGTGAATTGGAACCtttcttgtcctgctaagcattcaaaatgtaacgagtacttttgggtgtcagggaaaatgtatgtaaaaagtacatcattttctttaggaatgtagtgaagttaaagtagtccaaaaatataaatagtaaattaaagtacagataccccccccccaaaaacgactttAAGTAGTAATTTACACCACTGCTATGACGTCATAGAACTATCCTGTCCAATTATATCGGTGATTGCCTGAAAAGTGTGCCACACTTCATTGATGAGAAATGCccattctagtaattatatttctgtgTGTATCTGTCGCAGAAGGACAATGAAGTACCCAGGGAGTTTTAAGTCCAACTTTTTTTTTCCACCCTGGGCATTATAAGCAAATTATAAAAGGCTCCACAGTCTTTGCTAGTTCAATTTGCTCAATATCTACATATTGTATTTCATCATTGTGTCTTCCAGCTTTCAGCAAAGCTTACGGATGCTTTGTGAATGCTGTTATGTTGTTTAAGCAACATTTTGGCTGTCATAATCCAAATCCATTTAGAATCAAGGCATGACACTGATATCACTCCAGGAAATGTTTGTGCCACTGAAGTCGAGGGATGACACACAACAGACGTAATGACGCCCACACATCAACATAGCTAAAGATTTATGACTGGATGTTACCTGGAGGAAAAGGACTGGACCGTGTTTCCTTTCGGGTCTCCACGACAGTGTGACAAGGGTCTTAGTGGACTAACAGCAAGCTGGCAAAGCAGGCTAATGTACACATTGTTTGGCGAAAAGGCTGCATACTTAGAATGTGTCTGTCTAGCAGAGAGCCTTCGTAGATGTCACTTCAGTTCACATATCAGTTCAATATATACAACAAGTGTTACTTCTGTGTCAGGGATTTTCAGGGTTTCTGACCAAGAGAATGTCATCACGTCTTAAGAACAGACACGGAATCTCACAAATACAGCCAATACAAAGTGGCTATCCCATCTCAAGTTTCAAGTGTCAATGTTTATCTGCCACTTTGACAAGATACAACCGCTGTAAAACAGTATAGTAAAATTCTcaccttgagagcaatttcccaATAACACGGTGATAAtaataatagacacagtagatacTAATAGAATGAAACATTTAGATAATAATCCACACAAGATCTACGATGTGAGTTAAAGAAACAAGAGAATGAAAGTATATACAGGCCACTGCCAataccttattcaatgtgcaggggtactggagtggttgaaGTGGGTTTATACATAAAAAGTATATCTACcatgtacagtagctagctgaCCATCAGGTAAATGATATGTTTTTACCATATGTGGTTTCTCTTATGACCCAGAAGAGTGGTTGGACAAAATATGTCCTGTTCCACCAAATACCCATGATGCAACAGTTCACAGTGAGGTTGAGGGCCGTCACTAGTTACCCCAGCCACATAGTCATAAGTATGGCTAAACCTTTGAATTTGTGGCTGTGGTAGCTAGTGACATCCAAGTTTGAGGGAACCCATGCGAAACCCCTCACGTCACGATACCAGTACATCTGTTGCTCTTGCCGTGAGGGAAATCTATGCATGGTGCTATGCATTTAACTATTctataaaaaaacaataaaaaacaaTGCATTCTTATAGCAATAGAATTACAGGTACCTGTTTCTTAGAAACTTTTGTAAAATAAGATATTCATTCATCTATTTTAAAAAGATATGGAGAAGACAGATGGTCTCGATCTCTTTACCGATATTTACAACATGGCTGTCTGTGTATGTTGTTTGTTGTATTCTTTGATTTCATGAAGGTCAGTGGGGTCAAAGGTTAAAGATCAAAGTTAAcatctgggtcatgttcattagggaaaactttaaaaaaacattttgcaacaagaACATTTtgagtttcttattggacagaGAGTCAATCCCCAGTCAATCTCCCCATTTCACTCCGGGTTTAGAGCGGTTTATtctatttggtgcctaatgaacatgaccctgtccTAACACTAAGCATAGAAAACCTATGAAATGGCCAAATATAGGTATTGTACAGTGGCCATCCAATCCCCGTCAACCTCATAGGTTTACCTGGAGTAGTTTTCCAGCAAGGAAGTTGTGTTGACAAACAGAGCAAAGTAGCTGGTAGCACCCTCCCACAGGATTGAAGGGCTGTGTATTTAGTGTGAATTTAGTGTGAACGAGAGTCTGAGATGGTGCCTATATAGGTTTGTTTGTATAATGTATGCTATTCAAAAGAACAACGAGGGAGGTTTATTAAAAATACCATTCAGAgaaactcaagtaaaagtaaactATATCTAAAACGAAGAAAGAAACACTGTCAAATAGAGTATTGCAAGCAACTTTATAGAGCAACATGTCAAAACCAATCATATCTATGTTTTTTATTGTGTATCTTATATTTAGTTTTCTTTGTCACTACACTACTATtgattcccactgggcacagacgtcaattcaaggTCTATTCTACATTGGTTCAAAGTCATTTCATTGAACGGACGTGGAAACAATGATGATTCAACCAGTGGGTGCCCAGTGGATTGCATTTAGGAAGAACATGACAGAATATCCTGAAATATCAAAGACAATAATAACGTGTTCCGTTGCCAAGCCATGATGATTAAACTGAAGTACTATTGTTATTAATTTACTGCACTGACAATTCACTGCACTGACAATTCACTATGCTGACAATTTACTGTACTGTCAATTTACTGTACTGACAATTTACTGCACTGACAATTCACTATACTGTCAATTTACTGCACTGACAATTCACTATACTGTCAATTTACTGTACTGACAATTTACTGTACTGTCAATTTACTGCACTGACAATTCACTATACTGTCAATTTACTGCACTGACAATTCACTATACTGTCAATTTACTGTACTGACAATTTACTGTACTGTCAATTTACTGCACTGACAATTCACTATACTGTCAATTTACTGCACTGACAATTCACTATACTGTCAATTTACTGTACTGACAATTCACTGCACTGACAATTCACTATACTGACAATTTACTGTACTGTCAATTTACTGTACTGACAATTTACTGTACTGTCAATTTACTGCACTGACAATTCACTATACTGTCAATTTACTGCACTGACAATTCACAATACTGTCAATTTACTGCACTGACAATTCACTATACTGTCAAT

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234020 lncRNA downstream 846 94348739 ~ 94350164 (-) False LOC110500125
TU234023 lncRNA downstream 12744 94338030 ~ 94338266 (-) True G206756
TU234015 lncRNA downstream 21659 94329101 ~ 94329351 (-) True G206751
TU234012 lncRNA downstream 28718 94321722 ~ 94322292 (-) True G206748
TU234007 lncRNA downstream 33362 94315066 ~ 94317648 (-) True G206743
TU234028 lncRNA upstream 7283 94362510 ~ 94362759 (-) True G206761
TU234040 lncRNA upstream 29891 94385118 ~ 94385353 (-) True G206773
TU234095 lncRNA upstream 127167 94482394 ~ 94482692 (-) True G206827
TU234098 lncRNA upstream 131298 94486525 ~ 94486803 (-) True G206830
TU234102 lncRNA upstream 135181 94490408 ~ 94490696 (-) True G206834
XM_021577224.2 mRNA downstream 92177 94251418 ~ 94258833 (-) True LOC110500075
XM_021577199.2 mRNA downstream 107444 94232734 ~ 94243566 (-) True LOC110500060
XM_021577212.2 mRNA downstream 121465 94222366 ~ 94229545 (-) True LOC110500065
XM_036959490.1 mRNA downstream 129864 94188205 ~ 94221146 (-) False LOC110500043
XM_036959482.1 mRNA downstream 129903 94188205 ~ 94221107 (-) False LOC110500043
XM_021577316.2 mRNA upstream 8788 94364015 ~ 94367194 (-) True LOC110500132
XM_021577348.2 mRNA upstream 57017 94412244 ~ 94416157 (-) False LOC110500153
XM_021577355.2 mRNA upstream 57017 94412244 ~ 94417008 (-) True LOC110500153
XM_021577457.2 mRNA upstream 171321 94526548 ~ 94529606 (-) False LOC110500221
XM_021577466.2 mRNA upstream 171321 94526548 ~ 94529608 (-) True LOC110500221
TU234014 other downstream 22827 94327910 ~ 94328183 (-) True G206750
TU234008 other downstream 37092 94313390 ~ 94313918 (-) True G206744
TU234006 other downstream 38236 94312424 ~ 94312774 (-) False G206742
TU234005 other downstream 38236 94312527 ~ 94312774 (-) True G206742
TU232213 other downstream 1388076 92962044 ~ 92962934 (-) True G205192
TU234576 other upstream 261688 94616915 ~ 94617232 (-) True G207244
TU234581 other upstream 274210 94629437 ~ 94629739 (-) True G207249
TU234691 other upstream 407435 94762662 ~ 94776356 (-) True G207340
TU235317 other upstream 1022496 95377723 ~ 95408714 (-) True G207858
TU235447 other upstream 1168741 95523968 ~ 95524227 (-) True G207959

Expression Profile