RNA id: XM_021577355.2


Basic Information

Item Value
RNA id XM_021577355.2
length 2072
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC110500153
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94412244 ~ 94417008 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTTCAcactctctcacctccccctgcTCTTGCTCCAGCCATACAGACATGATGCTACAGGAGAGCACTTCACAAGACTGTTACAGGAGCTATCGGCATAACAGAAGCTGATGTGCTGCAGTCTGATGTGCCTcactttttttcttcattttatcGTTCCTTTTTCATTGGGATTTGTGAGATAAATAATTACCTAAATATACGGGAGATATTGGGAAGGTAGCTGGCTAGACCAGTCTCAAGGGGGTTTCCCCATGTTACCCTCTCGCTGAAGGTCTTACTCTGAACCAATAAATACGAGTTTCTTATTTTTTGTGAAGATATCTCTATTTTGGATTTTAGAACGTTTGGAAAGAAATCTCTATTTGGGATCTTTGGAAAGTTTGCAAAGATATCTATTTTTGGGGAATTTGCAAACTGGAGAAAACCTTTTTGTGGATAACTTGTTTTGGAAATCTACTCCATAGTTCCAGACTTCCAGAATGCTGTGTTCCAGAGGCATGCTCCAGCAGTGGAGTCTAGCTGTGTTCCTGCTGTactcttctgtccctctctacGGGAGACGCATCGATGCTCTCACTAACAGAATGAGGAGGTCAGTGAGCCACGCCCAGCTGATGCACGATAAGGGCCGTTCCCTGCATGAGTTCAAGAGACGGCACTGGATCCAGGAACTACTAGACCAAGTCCACACGTCCGACAGCGAGCGAGCCCCGGCTCCCCAGAGCAGGACCAGTGCTAATGAGTGTCACAGCACCTTCAGCGGAAGCGCCCTATCCCCCCCCAAACCCTCTGGAGGGACCAAGAACCTCCCCCTGAGCTTCCggctgggaggggaggggagcaaCCTCCCCCAGGAGACCAACCAATCTGTGGCCTACAAACACCAACCTCTGAAGGTGGTCACCAAGAGGAAAAAGaaggtgaagggggagagagggagacggaaggagagcgagaagaggaggaggagggctcgCTCTGTAGTCACAAGTCTTACGACACAAAGAGAGGAGTTACAGAGGACACAAGACACTGTGTGACAAACATACTTCATGATGTAGCCTTTGGGTGGCGCTGCACTACGGACTCTGACTGACAAAGATTCCAGCATCACTGACTGAGACTCAGCCTAATGTCTCAGACTCGAAACAACTGGTCTCTCCATACCATGGCCATTGGTCTTTGCTTGTATTGTTTTAATCTGCTGCTTTTTCCTTGTGCCTTGATATACAGTAATATGTTGCTACTTTTATTATAACACATAACTTCTGTATACATATTTATTAGGTAAATAATATGAAAATCATCAGCCATGTTAAATTAATCTTTAACTCATCCCTAGTTAGATAACAATGTAAGATATGGGCCCTTCAGGAGCAATTTACTGTATCTCCCTAATACCCTTTAAATCCTCAATCAGATGTCCATGTGTAAAGTACAACATAGGCAACACAGTCAACGTTACGCATAACATATTTATTGTTTGTACATATTTAAATTCACAAAATGAGGGAGgatcattctttctttcttttactGCCCGGTAGCTTTTTAGATAGTCGATATTGTGAATATATAATTTCTTATCTGTAGTTAGTATTATTAGATCCATAACAAATGTTTTTACCATAATTTATTTCATTTGAACTGTATATTTATTTTGTGAATGTATTACCGTGCTGCTGATTTTTTGATATTTTATAATAACATAAAATGCACTTTAGATATAATGATGATATCCATATGTTTTGTTAAGTTACATTGTTATAAGTGTTCTCATTTGTGGTTGGTTTTAATTAAGAAAGAAAATGTTCCTTTGTTGATAAACCCTTTATTTTTGATTTGCTTCTTGGTTTCTAATATTAACCAATCATCTCATTGACTAGTAAGTTATTGGATCATCCATCAAATTCTCTCtagttttaattattattttttttagaaaAACAAGCCAGAGTTGAAACTGTTGGAATGATTACAGACTTGTTAAGATTCATGTCATGTTTAGCATTTGCACTGAGAGCACAatcatttaaataataataataataatcaaaccAAAGATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234040 lncRNA downstream 26891 94385118 ~ 94385353 (-) True G206773
TU234028 lncRNA downstream 49485 94362510 ~ 94362759 (-) True G206761
TU234018 lncRNA downstream 57017 94351010 ~ 94355227 (-) True LOC110500125
TU234020 lncRNA downstream 62080 94348739 ~ 94350164 (-) False LOC110500125
TU234023 lncRNA downstream 73978 94338030 ~ 94338266 (-) True G206756
TU234095 lncRNA upstream 65386 94482394 ~ 94482692 (-) True G206827
TU234098 lncRNA upstream 69517 94486525 ~ 94486803 (-) True G206830
TU234102 lncRNA upstream 73400 94490408 ~ 94490696 (-) True G206834
TU234107 lncRNA upstream 81979 94498987 ~ 94499815 (-) True G206839
TU234111 lncRNA upstream 84885 94501893 ~ 94504156 (-) True G206843
XM_021577316.2 mRNA downstream 45050 94364015 ~ 94367194 (-) True LOC110500132
XM_021577304.2 mRNA downstream 52322 94348518 ~ 94359922 (-) False LOC110500125
XM_021577224.2 mRNA downstream 153411 94251418 ~ 94258833 (-) True LOC110500075
XM_021577199.2 mRNA downstream 168678 94232734 ~ 94243566 (-) True LOC110500060
XM_021577212.2 mRNA downstream 182699 94222366 ~ 94229545 (-) True LOC110500065
XM_021577457.2 mRNA upstream 109540 94526548 ~ 94529606 (-) False LOC110500221
XM_021577466.2 mRNA upstream 109540 94526548 ~ 94529608 (-) True LOC110500221
XM_036959632.1 mRNA upstream 187036 94604044 ~ 94611301 (-) False asb13b
XM_021577491.2 mRNA upstream 187036 94604044 ~ 94611792 (-) True asb13b
XM_021577587.2 mRNA upstream 248920 94665928 ~ 94686791 (-) False LOC110500283
TU234014 other downstream 84061 94327910 ~ 94328183 (-) True G206750
TU234008 other downstream 98326 94313390 ~ 94313918 (-) True G206744
TU234006 other downstream 99470 94312424 ~ 94312774 (-) False G206742
TU234005 other downstream 99470 94312527 ~ 94312774 (-) True G206742
TU232213 other downstream 1449310 92962044 ~ 92962934 (-) True G205192
TU234576 other upstream 199907 94616915 ~ 94617232 (-) True G207244
TU234581 other upstream 212429 94629437 ~ 94629739 (-) True G207249
TU234691 other upstream 345654 94762662 ~ 94776356 (-) True G207340
TU235317 other upstream 960715 95377723 ~ 95408714 (-) True G207858
TU235447 other upstream 1106960 95523968 ~ 95524227 (-) True G207959

Expression Profile