RNA id: XM_021577436.2


Basic Information

Item Value
RNA id XM_021577436.2
length 2454
RNA type mRNA
GC content 0.41
exon number 10
gene id LOC110500215
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94529641 ~ 94541962 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTATCTTTATGGGAAATGTTGTTATCATTGTGGAAACTACAATACCCAAGCGTACCAATTTATTTATCTAGCTTTATCTCGGGCAGGGACCTGTGTTTACACAATGTCCTCGTTAGAAATACTCTTGAACAAGTAACGTATATAATTTTCGACAAAGTTTTTACCGATAACTGCAAACATGAACACCATTTTTGCAGTACTTCTTGTTTTTGTTGGGTGCTGCAGCAATGTTGTGTTTCTGGAACTACTTGTAAGTTTCCAGGATGTGGCAACATTGTGACCTTTGCTCAATTTGCCTTCATTGCATTGGAGGGGTTCATCTTCGAGACGAACTTTGGAAGAAAGAAACCAGCTATTCCAATGAGCAACTATGTGATCATGGTGACCATGTTCTTCACAGTCAGTGTGATCAACAACTATGCCCTCAACTTCAATATCGCTATGCCTCTGCACATGATCTTCAGATCTGGATCATTAATAGCTAATATGATCCTGGGTATAATAATTCTGAAGAAAAGGTATTCAATGAGTAAATATCTCTCCATAGCGATGGTGTCTCTGGGTATCTTCATATGCACCATTATGTCCGCCAGACAAGTGAACACAGGGGCCGAGGGCTCAGAGGACCAAGATGTTTATGCCTTCCTGCACTGGCTGCTAGGGATCGCCATGTTGACCTTTGCTCTGCTCATGTCTGCGAGAATGGGCATTTTCCAGGAGACCCTGTACAAACAGTATGGCAAACACTCCAAGGAGGCTCTCTTCTACAACCACTGCTTGCCTCTTCCTGGGTTCCTGCTTCTGTCCTCAGATATCTACAACCATGGTGTCCTCTTCAGTCAAAGCACTCCTGTAGAGGTTCCTGTGATTGGCCAGGCTGTTCCAGTGATGTGGCTATACCTGCTGATTAACGTAATCACACAATACGTGTGTATCCGTGGCGTGTTCATCCTGACCACAGAGTGTGCCTCTCTCACTGTGACCCTGGTGGTCACACTGAGGAAGTTCATCAGCCTCATCTTCTCCATCCTCTACTTCAAGAACCCCTTCACCGCCTGGCACTGGGTGGGCACTGCCGTCGTCTTCCTGGGCACCCTGATTTACACGGAGGTCTGGACTAGCGTCCGCATGGCACTGAGAGGAAAAGAAGAGCTGAAAGAGAAGAAGGCGGAGTGATACACAGCACTGACGTATCACTCAATGACTGATTTCACTTTATCTTTCCTCAATTCcttgcatcctctctccttgcctcattctcaaaacacattggagaAGAAGGTCTAGGGAGAGACCTGAGACATTCTCTTCCAATATGATTGTAaagtagtagaggagagaggatgcgaggAAATGTCGAAAGAGAAATTAAGATAGAGCCAATggcactgttgtgtgtgtgtgtgtgtgtgtgtactgtatttgtTGTAGGTGtgctccccccttctctctctgctgcagtcgCAGTGGGACCACGTCTGTTTTTAATAGGATCATAATTCTGTATTTTTTTAGTAAGGATTTTCCTATTTCCTTAGAAAAGATGGCTTCCCAATAGGCTTCCTGCCTAACCCATTTTTAAGGACATCACctaacagtggaggctgctgaggggaggacggctcataagaATAGCTGGAATGGCGTGAATGAACAGGCATCAAACGCATGGAAAACAGACCATTCCactattctgctccagccattaccacgagcccgttctccccaattaaccTGTCTGTGCTagacaaacactacagtactTATTGACCAAATAAGCCAAGGCAAgctaaaaaattaaataaaaacacacatataataattataataaaaaatacatatttgtccTCTGAAGACAAAGGgattcataaaaaaataaaataaggcaAGCTATTGTGAAACTGAAACCGTACTGTTCTGTTAATTTTGTTTGGTGAAAACTATTTATTTAACTAAATATGAGGTTGGGGATATTCTGATCTGTGTGTTAATAGTGAGTTGACAAACCACTTCATCAACAGATATTGATGGGACACAAGTGAAACGTGTTATGTTAATGTTTTGTGATACTTGTTCATGTTTTATTTGAGGAATATCTCATTAGGAAACTGTTTGTCCTATCAAAGTAGTACTTGGCAGGACCAGTAACTTTGTCATGAAAAACATCAATGTGAAAAACCATGCAAatgcatttttattttaaaagatTGTCCTACATTCTAGAATCATTACACCATCCATTCTATATCTACTGAAATTGCATTGTATTATATAGTTTCCATATATTACATTTCTCTGTACGTATATTTCCATAACATGAGTCCCTGATAATGGGACATACTGTACTTCTTACGTCATAGTTTCCGTGAAAATGAAGACCAATGGAAAGGGGTCTTGTTCAAGACGCCTTTTCTCAGCCAATAGAAATGACCAATAAACATTACTCAGAAGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234129 lncRNA upstream 1612 94527436 ~ 94528029 (+) True G206859
TU234128 lncRNA upstream 2563 94526572 ~ 94527078 (+) True G206858
TU234112 lncRNA upstream 25002 94504437 ~ 94504639 (+) True G206844
TU233753 lncRNA upstream 39487 94488578 ~ 94490154 (+) True G206556
TU233751 lncRNA upstream 41309 94488131 ~ 94488332 (+) True G206555
TU234121 lncRNA downstream 21011 94562973 ~ 94563894 (+) True G206851
TU234168 lncRNA downstream 71151 94613113 ~ 94613397 (+) True G206896
TU234171 lncRNA downstream 74779 94616741 ~ 94617003 (+) True G206899
TU234174 lncRNA downstream 83195 94625157 ~ 94625377 (+) True G206902
TU234181 lncRNA downstream 90601 94632563 ~ 94632762 (+) True G206909
XM_036959594.1 mRNA upstream 9500 94514561 ~ 94520141 (+) False LOC110500186
XM_036959602.1 mRNA upstream 9500 94514674 ~ 94520141 (+) False LOC110500186
XM_021577399.2 mRNA upstream 9500 94514877 ~ 94520141 (+) False LOC110500186
XM_036959608.1 mRNA upstream 9500 94514877 ~ 94520141 (+) True LOC110500186
XM_036959614.1 mRNA upstream 15894 94505958 ~ 94513747 (+) True LOC110500174
XM_021577408.2 mRNA downstream 5 94541967 ~ 94556385 (+) False LOC110500196
XM_021577415.2 mRNA downstream 5 94541967 ~ 94556385 (+) False LOC110500196
XM_021577424.2 mRNA downstream 5 94541967 ~ 94556385 (+) False LOC110500196
XM_036959631.1 mRNA downstream 46573 94588535 ~ 94602636 (+) True LOC110500230
XM_021577527.2 mRNA downstream 96169 94638131 ~ 94665869 (+) False LOC110500246
TU233702 other upstream 91959 94402591 ~ 94437682 (+) True LOC110500139
TU233549 other upstream 427769 94100979 ~ 94101872 (+) False G206389
TU234120 other downstream 15207 94557169 ~ 94562224 (+) True G206850
TU234180 other downstream 89867 94631829 ~ 94632267 (+) True G206908
TU234200 other downstream 163984 94705946 ~ 94706248 (+) True G206926
TU235944 other downstream 1685831 96227793 ~ 96228463 (+) True G208404
TU236415 other downstream 2070467 96612429 ~ 96613459 (+) True G208836

Expression Profile