RNA id: XM_021577415.2


Basic Information

Item Value
RNA id XM_021577415.2
length 2893
RNA type mRNA
GC content 0.50
exon number 9
gene id LOC110500196
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94539657 ~ 94556385 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCAGGTACTTGCGGTTGTGTTTGTATCGGAGCTGTGAGATTAAACTGGGCGGCGTGTTCTCGGTCCAAAGACCCACGTTGTGGTTCAAGATTTACACCAAACCTACCTGCACATTTCTCAATAAAATTTTAGGCACTCTGTCTGTACGAAGAGGATGGGAGGCAACAGCAGCAGCCACGTCTCGTATGAAGACGACCACGTTACTTTTGTGAAGGGCATTCGGCTGACTGACAAAGTCATCAATCGGATGAGAGAGGAGTGCCAAGCCCAGAAGGTTGTCCATCCTCGCTCACAGCAGAATGGACCTGCTTCCACGCTCTCAACAGAACCTGTGGTTCCTGTGTCCACACCGGCCCCCACAGTCGATCATTTGGTCCCCCTTCTGGTCTCCCCTTCCCTGTTTATCCCCACAGCCCCTCCACCTGCGGTCCTACCCACACCTCCGTCTCCCCCTGTTCAGCCAGTAAAGCTTACTCCTCCACCTCCTGTCACATTTGTCTCTGCTCCCTGTCCACCTGCGGCCCTACCCACACCTCCCTGTCCACCTGCGGCCCTACCCACACCTCCCTGTCCACCAAAGGAATCGATAGTCCGAGCTCCAGCTGTTGAACCTATTGTTCCACCTCTAGATACCAAAGTGCTTCCTCAAGGGGCAGAACCCATACTTCCTCTGGTGCCTTTAGAACCTATAGCGCCATCTTTGGCCCCATCTCCACCAATAGAAGAACCAGTACCCGTACTCCTATGTACCCCTACCACTGAGGAACCTGTAGTTCTGCCGACACTGGCTGAACCTATTGTCCCACTTGTCCCTATAGAACCCGTAGTACCACCTAAGCCTGTGAAACCTGTGGTTCTAGCTTCTCCAGCTGTGGAACCAATTGTGCTGCCTCCAGTGGTTGAATCTGTTGTCCTACATCACCCTGTAGAACAGGTAGACCCACTTACCCCTGACCCTTCACCTGTTGAAGCTACTGTCCTGCCACCTGTTGTGGTTGAGGAAGTAGCAACACCTACCCTCGTAGAACCGGTAGTCCTGCCACCTGTTGTGGAATCTGTCACCATTACGACACCACTTGTTGTTGAAGAGGTTGTCGTACCCACACATCCACCTGTAGAGCCCCTACCTGTCTCTACTCCTCCGCCTGTTGCAGAACCTCCACCTCCCCCAGTCCTAGCACCTATCCCAGAGCCTATTCTGGAGGAACTTCCTCCAGCACCATGTCCCTCCATGGAGCTGGCCACCCTGTCTACTGCATCGGCTGCTAGCAAACCAACTGATCTCCCTCCCCCTGTAGAAGAGCCCAtagctccccctcctcctctctctgccccagtAGAACCCATGGTCAGCATTCCACTACTCCCTCTCATTGAAAACGTGGCTGTTCCAGTCGTGGCTCCTGTTGTGACCCCCCCTGTGGTCCCACTGCAAACTCCATTGGTGGTAGATGAAGAAGTGCTGAGGAGGCAGATCCGAGCTGAGCTGACGAAGGGCCTGGAAGAGGAGATGAAAGTGAAGCGGCAAGAGTTTGAAAAACAgtTGTATGAGGTGAAGGTCCAGGCCAGAGCCCAGGCTCAGATCCAGGAGGAGGTTAAGAAAATCCTGGATGCGGAGAAGGCAGCGCAGGGAGAGAACCTGATGGCGGCCATAGAGAAGGAACGCATGACCACAGAGGATGAGAGACTCATGGCCCAGCTCTACTGGATAGAGCTTAAGGCCCACAAactggaggagaaagagaaccaGGTGAAGAAACAAGATGCACTCTTCAGGGAACAGGTCGCCAAGCTGGAAGAAAAGAGTGCTCAGTTCTTCAAAGTCACCACAGAGAACTTCAAGAAGGGCAGAGAGGACGCCCACAACACCTTCAAGCGTGTTGACATCAAGCCAGTGTGTGGTGACCTGCAGAGTCAGATCCTGAAGTGCTACAGGGAGAACACTGGACAAACCCTCACCTGCTCTGGCATCGCCAACTTGTACATGAAGTGTGTGGACAACCACAAGACTAAGAGCATTGGAGGTTAGAAGAGCCTAATTTTTCACCAATGGCGTTACTGTTTAACTAGAGGGACAGGAGCTGAACGCCATCAGCCATCGAGACGCACCAAAAACCAGTtgaactgttctgagaccatgACCACCACAGCTGAAGACACTCCTGCTCcaccatcccttcctcccatccatGGTATCTGTATtaatccccccccctccccccgagAGGGTCAGAGGTAGAATGAGGAGCCCATGTCCTGACCCAGTACAGGCTAGAGGCTGGTACTGATGTTAAAGAGAGCGCACAATATGGTTCTTGGGTACACAAATGGACAGTGCTACTAGCACTACACTGACAGAAAATGGACATTGTTACCATGACTACACAATGACAGGAAATGGAACCGGAAATGCAACACGTGCACTACACTATGACAGAAAATGGACATTGTTACCATGACTACACTATGACAGGAAATGGAACCGGAAATGCAACACGTGCACTACACTATGACAGAAAATGGACATTGTTACCATGACTACACTATGACAGGAAATGGAACCGGAAATGCAACATGTGCACTACACTATGACAGAAAATGGACATTGTTACTGTGACAGGAAATGTGAGACATCTCATCCCTGACTGAATATAAAATGCTTTATACATCTCCACCAATGGAAATATTGGGATTACGCTTTTGCCATTGACAGCAGTATGAAACATAATGGAATGGCCAAGTTGTGAAAGATATTGTGCATTGTTTGTTTGTTGAGTTAATACGCACCTATGCCTTAATGTCCTATCAAAACACAAATGTTGCCTatggaaaaaaaatattgtaattttgATCTTTATTGTTATAAAATACAAACGGATATGGGGGTGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234129 lncRNA upstream 13938 94527436 ~ 94528029 (+) True G206859
TU234128 lncRNA upstream 14889 94526572 ~ 94527078 (+) True G206858
TU234112 lncRNA upstream 37328 94504437 ~ 94504639 (+) True G206844
TU233753 lncRNA upstream 51813 94488578 ~ 94490154 (+) True G206556
TU233751 lncRNA upstream 53635 94488131 ~ 94488332 (+) True G206555
TU234121 lncRNA downstream 6588 94562973 ~ 94563894 (+) True G206851
TU234168 lncRNA downstream 56728 94613113 ~ 94613397 (+) True G206896
TU234171 lncRNA downstream 60356 94616741 ~ 94617003 (+) True G206899
TU234174 lncRNA downstream 68772 94625157 ~ 94625377 (+) True G206902
TU234181 lncRNA downstream 76178 94632563 ~ 94632762 (+) True G206909
XM_021577436.2 mRNA upstream 5 94529641 ~ 94541962 (+) False LOC110500215
XM_021577446.2 mRNA upstream 5 94529666 ~ 94541962 (+) False LOC110500215
XM_036959629.1 mRNA upstream 5 94529666 ~ 94541962 (+) False LOC110500215
XM_036959628.1 mRNA upstream 5 94529708 ~ 94541962 (+) True LOC110500215
XM_036959608.1 mRNA upstream 21826 94514877 ~ 94520141 (+) True LOC110500186
XM_036959631.1 mRNA downstream 32150 94588535 ~ 94602636 (+) True LOC110500230
XM_021577527.2 mRNA downstream 81746 94638131 ~ 94665869 (+) False LOC110500246
XM_021577502.2 mRNA downstream 81772 94638157 ~ 94665869 (+) False LOC110500246
XM_021577517.2 mRNA downstream 81772 94638157 ~ 94665869 (+) False LOC110500246
XM_021577546.2 mRNA downstream 81772 94638157 ~ 94665869 (+) False LOC110500246
TU233702 other upstream 104285 94402591 ~ 94437682 (+) True LOC110500139
TU233549 other upstream 440095 94100979 ~ 94101872 (+) False G206389
TU234120 other downstream 784 94557169 ~ 94562224 (+) True G206850
TU234180 other downstream 75444 94631829 ~ 94632267 (+) True G206908
TU234200 other downstream 149561 94705946 ~ 94706248 (+) True G206926
TU235944 other downstream 1671408 96227793 ~ 96228463 (+) True G208404
TU236415 other downstream 2056044 96612429 ~ 96613459 (+) True G208836

Expression Profile