RNA id: XM_036959631.1


Basic Information

Item Value
RNA id XM_036959631.1
length 3578
RNA type mRNA
GC content 0.47
exon number 13
gene id LOC110500230
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94588535 ~ 94602636 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaaagcaaatggcttcTACTGAAAAGAGAGAACCAATAGAATAAAAACAATTCTCAACAACTCCCAATTTTTTAGTTAACAGCCGCATTAATCACTTAATCGGACCATGCTTAATCCGGCCATGTTTCTCACTGAAGTGAATTTACTGAGAGACCGCCAACGTGCTTTTCCTCAATATTCTTTTCAGTAAATTAACTCCTCCCACTCGAAATCCTCAAGCTTTTCCCTCATTGGCCGATTTGTGATATTCCGCCATATTCAAACTTCCGCCGTCACTTTTGGTTGGATTGATCGATTTACTGCGGATTTCTTTCATCCATCGTTGCAATTTCCATTGTTTTGAATTAGCGATATTGGCTAGCTTCCTACTACACCCAACCTCTAAAATGGAGGAGTCAGAGGTGGGCGAATTATCTGTGGAAGACGAGCCGAAGAGACGAAGGATTTCCTCGAAGAGAACGTCCACGGTCAACTCAGAAACCTCCCCCGCCACTGTCAACAACTCCAAAAAACCTCCACTGTGCCGAGGGAGTTCCTTCACCTTTCTGACTCCAGGAACACCATGGGACTTCAGTCTGAAGAGGAAACACAAAGAGCCCAAGGATGATGACACTGTCAGTCTGTCCAGCTTTGACCTCAAAGTAAAGAGAAAACGCAAAGAGAAAAAGGAGGATGACGACACCGTCAGTCTGTCCAGTTTTGACCTCAAAGAGCCCAGTAACAAGCGTGTGCGACCACTGAGCCGGGTGTCATCTCTGGCTAACCTGATCTCCCCTTCCAAGAATGGAGCCGTCCGACGCTTTGGTCAAACCATCCAGAACATGTCGCTGCGGGGTGACAGCAAGTCGCCGGGGGCGTCCCTGAAGTCGTGCAGTAAGGCAGCGGGCCCAACACCTCCCAAACGTAGGAACAGCACTCTGTGGTCTGAAACACTGGACGTTCACCAGAAGAGCACCTTCTCCACCAAAGAGATTAAGAGACAGGAGGCCATTCATGAGCTGTCCAGAGGAGAACAGGACCTTATTGAAGACCTCCAAATGGCACGAAAGGCATATCATGATCCCATGCTGAAGCTTTCCATCATGACAGAGGAGGAGCTAACTCATATATTTGGAGATCTGGATTCTTACATTCCACTTCATGAAGACTTGTTGGATAAGCTTGCAAAAGGCACCGGTCCTAATGGAACAGTTGGTCAGATTGGACAGATCGTCGTGGACTGGTTGCCAGGTCTGAATGCGTACAGAGACTATTGCAGTAACCAGCTGGCTGCCAAGGCCCTGTTGGACCAGAAGAAGCAGGACCGGAAGGTGCAGGACTTCCTGCAGCGCTGCCTGGAGTCTCCCTTCAGTAGGAAGCTGGACCTGTGGAGCTTCCTGGATATCCCCAGGAGCCGTCTGGTGAAATATCCCCTACTGCtgagagagatactgagacatACACCACCAGATCACCCTGACGTTCCCTGTCTGGAGAAGGCGATAGCCATCATCCAGGGTGTGCTGTCTGACATCAACATGAGGAAAggagagtcagagagtcagtaCTACATTAATAAGCTGGAGTATCTGGACGACAGGCAGAGAGACCCGCTCATCGACAACTGCAAGACCTTGTTGTGTCACGGAGAGCTACGCAACAAGAGTGGCTCGAAACTGCACGTGTTCCTGTTCTCTGAGCTGCTGGTGCTGACGAGGCCGGTGACACGTCACGAGCGGAGCTGCTACCAGGTGTACCGTCAGCCCCTCCCCATCAGAGACCTGGCTCTGGAGGACCTGCAGGATGGAGACGTACGCATGGGAGGGTCATTCAGAGGGGCCTTCAGCCAGGGGGAGAAAGCTAAGAACGTGTTCCGCGTGACCTCCCTGGACCCGACCCACGGCCAGTCTCACACTCTGCAGGTCAACGACGTCTTCCACAAGCAGCAGTGGCTCAACTGTCTCCGCAGCGCCATCGACGCCCAACCTCAACAGCAGAGGGCGCCACTCAGAGATCAGCACAGTGAGGCTACAACCATGACCAGGGCCAAGCGTCGTTCTTCTGTGGTGTCCATGTCTGATATGGTGGGGGAAGGGGCAGATGAGAACGTCTGGCACCAGGTCGGTGAGCCAATCCTTGGGTGTAAAGGCACAGAGACACTCCCCGCGTCTGGTTCTTCAAGTAAAATCAAAAGAGAGTGGAGCCGTGGTACTCATCGCAGGAGGAAAGAGACCGGGGTTTAGGAGAACGGAAGAGTCCACGGAGCCTCGTGGGATGTCTACACCTGTACACCTTCATTCATTTGTATTTCTACTGtgtcttcttcttctatggtgtTATGTTGGACTTCTTACTTGTGATATTAATGTGGAGGCTACTTGTTTGTGAATTTCCATGACACCTGTCTGTCGAGTAGTGATTTTGCATAAAAGAGTATGTATGACAATAGCAGTGATGTACCATGACGACCATGTAGTAAGCTATGTCAAAACCGTCCAATCACATCCGTCCAGTCTGTGCACTGCAAACCAATGAAATTGAAGAGTTCTGTAAATTTCAGGAGAAAAAAAAGTTATTGGTTTACTTTACAAGGGAATGATATTTGCCAACCAAATTGACTGAAAATGGTTGTTACAGCGATTATGAGAATTAGGATTTTAggattaggattttttttttaaatgttaaaatgACTAACTCTGTTTTTTTATACAAAATAGCACTGTTTTTAGCTCTTAGAATAAGAATAAATGTTGCTTGGAACTGGAATTTATTAACCACTTGATTTGATAAGTCATTATTTCTACAGGGTTGGTCCGTGTGTCCTTCGTTACTATTAAAAAGGCCTCTGCAGGCTTTGTTGAGACGTTTCTCTGTGCCCCAAATGACAGCCTATtccatgttttttggggggggggggggggggtttcataGCCCTAtgtggcctggtcaaaagtagttacACTATATCGGGTTGTGGGGTGCCATTTTGAGACTGGAGCCTCTCTTTCCATGCAGCACCATGTGTTGAGGTTGATCTTCAGTAGTGTACACAGTGCAGACCACATGCAAATATTAGTCAACTGTCTGATGTGTTGTTGTGGAGACAAAGGTGACAAAGGATAAAATGAGTATGTTGTTGTGAGAAGGCTCGGCCGATTCTCTACCCTCCTTCACAAGGAAGTGTTCACTCTCACATTTTAAAAGTCTTGGATTAGTGTAAGTACGGCAGAAGGGAGTTTCTAACATATTCCTACAACCAGCCCATTCCTTTTAAATCCGTGAAGGAGAGTGCGCAAGTGTAGGGTATGAGGGCACGCctggagagaagggtagagaattGGACTGCAACTGAGTTGTATTAATGGTGGGAAAGTAAAGGTTTCGGAATGGGTTCTCTTGAGAACTGGAGGTGAGAGAAGCACGAAACTGACACGACAATCAACCACAAGTTATGCTGTGTGCAAAGAGAGGGGAACAAGTATCACTGGAATGCTTTGTGTGAAAAGGGAAAGACCAATTAGATTATGTGAGGGAAAATCTGTGAGAAGCTACCTGTGTTCCTTTTCAATTAAAAATAAAGAGCTTTGATGTTTGAA

Function

GO: NA

KEGG:

id description
K20683 ARHGEF3_8; Rho guanine nucleotide exchange factor 3/8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234121 lncRNA upstream 24641 94562973 ~ 94563894 (+) True G206851
TU234119 lncRNA upstream 32157 94539657 ~ 94556378 (+) True LOC110500196
TU234129 lncRNA upstream 60506 94527436 ~ 94528029 (+) True G206859
TU234128 lncRNA upstream 61457 94526572 ~ 94527078 (+) True G206858
TU234112 lncRNA upstream 83896 94504437 ~ 94504639 (+) True G206844
TU234168 lncRNA downstream 10477 94613113 ~ 94613397 (+) True G206896
TU234171 lncRNA downstream 14105 94616741 ~ 94617003 (+) True G206899
TU234174 lncRNA downstream 22521 94625157 ~ 94625377 (+) True G206902
TU234181 lncRNA downstream 29927 94632563 ~ 94632762 (+) True G206909
TU234182 lncRNA downstream 31560 94634196 ~ 94634546 (+) True G206910
XM_021577408.2 mRNA upstream 32150 94541967 ~ 94556385 (+) False LOC110500196
XM_021577415.2 mRNA upstream 32150 94541967 ~ 94556385 (+) False LOC110500196
XM_021577424.2 mRNA upstream 32150 94541967 ~ 94556385 (+) False LOC110500196
XM_021577436.2 mRNA upstream 46573 94529641 ~ 94541962 (+) False LOC110500215
XM_021577446.2 mRNA upstream 46573 94529666 ~ 94541962 (+) False LOC110500215
XM_021577527.2 mRNA downstream 35495 94638131 ~ 94665869 (+) False LOC110500246
XM_021577502.2 mRNA downstream 35521 94638157 ~ 94665869 (+) False LOC110500246
XM_021577517.2 mRNA downstream 35521 94638157 ~ 94665869 (+) False LOC110500246
XM_021577546.2 mRNA downstream 35521 94638157 ~ 94665869 (+) False LOC110500246
XM_021577554.2 mRNA downstream 35521 94638157 ~ 94665869 (+) False LOC110500246
TU234120 other upstream 26311 94557169 ~ 94562224 (+) True G206850
TU233702 other upstream 150853 94402591 ~ 94437682 (+) True LOC110500139
TU233549 other upstream 486663 94100979 ~ 94101872 (+) False G206389
TU234180 other downstream 29193 94631829 ~ 94632267 (+) True G206908
TU234200 other downstream 103310 94705946 ~ 94706248 (+) True G206926
TU235944 other downstream 1625157 96227793 ~ 96228463 (+) True G208404
TU236415 other downstream 2009793 96612429 ~ 96613459 (+) True G208836
TU237298 other downstream 2883840 97486476 ~ 97486772 (+) True G209586

Expression Profile