RNA id: XM_036959684.1


Basic Information

Item Value
RNA id XM_036959684.1
length 6386
RNA type mRNA
GC content 0.42
exon number 14
gene id LOC110500292
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94715153 ~ 94770734 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acagagagagagagagagagagagagagagagagagagagagagagagagagagagaaataggctacccggagagagggagaaagagtgagaagaAGAGAAGTGGCCATTTAAACACACACAATAAGTTGGATTTTTCTGGAAGAGCACCGTGCGATGTTGGAACACTCGTCGGATCTAGCCCTGGTGCAGAGCTTGTATGTTAACAGCATGCGCTGTCCCCCCTCTGCCTCCGCCGCTGGTGTCCCCGTCAGGAATGAGGACCTAGGATCTCTGAGCAACGGCAGCAAGATGAACGGTTCCATTGAGAACCTGGAAACacctgaccatgactccatcaaGATGTTCGTTGGCCAGATACCTCGCTCCTGGACAGAAACCGAGCTCAAGGAGCTGTTTGAGCCCTACGGCGCCGTGCACCAGATCAACATCCTCCGAGACCGCACCGCCACACCCCCCCAGAGCAAAGgATGCTGTTTTGTAACGTTTTATACCAGAAAAGCTGCCCTGGAGGCCCAGAATGCATTGCACAACATAAAGACCTTAACTGGGATGCATCATCCCATCCAGATGAAACCCGCCGACAGCGAGAAAACAAACGCGGTGGAAGACAGGAAACTCTTTATCGGAATGGTGACGAAGAAATACGGCGAGAATGAGGTTCGGCTGATGTTCTCTGCTTTCGGCCAGATAGAGGAATGCCGAATTCTCCGTGGACCCGACGGTCTGAGCAGAGGCTGTGCGTTTATCACATTTTCTACCAGGGCTCAGGCTGCGAATGCAATCAAATCCCTGCATCATTCTCAGACAATGGAGggcTGCACTTCTCCCATGGTGTGTAAGTTTGCGGACACTCAGAGGGACAAGGAACAGCGGCGCCTGCAGCAGCAGATGGCCCAACAGATGCAGCAGCTCAACAGCGCCTCCACCTGGGGAAATCTGGCAGGGTTGGGAGGCCTCACGCCACAGTACTTAGCCTTGCTCCAACAGGCGACGGCTACCAGTAACCAGAGTACTTTTGGCAACCAGAGTACTTTTGGCAACCAGAGTTTTGGTAACCAGAGTAGTTTTGGTGGCATGCAGAGACTAGGAGGTGTGAACCAGCTGCAGCTGCAGAACCTGGCCACATTAGCAGCTGCCGCCTCTGCAGCCCAAAACTCAGGCGGCTCCACCAACACCCTGTCAGCCAACGGCGCTTTAGCAGGCCAGACGGCAGGTTCCAGCGCGGGTGCAGCCATGAACACCCTGGCCTCTCTGGGACTGACCCAGGGCCTTGGCGGCGGTCTGACGGGCGCCTCCATGGGCCTCAACAACCTCAACGCCCTCACTGGGGGGGTCAGCGGTGAGTATGCCCTCATGTTAGGTATGGCTGCTATGAACGGGGGCCTGGGGGCCTCGATGGCTAATGGCTCTGGAGCGAGTTCCATGGATGCCCTGACCCAGGCTTACTCAGGGATGCAGCAGTACACTGCGTCCGCCCTGCCTTCCCTCTACAGCCAGTCCCTGCTGCAGGGTGCAGCCGGCGGGAGCCAGAAGGAGGGTCCTGAGGGGGCTAACCTGTTCATCTATCACCTGCCCCAGGAGTTCGGAGACCAGGATGTCCTTCAGATGTTCATGCCTTTCGGAAACGTTGTCTCTGCCAAAGTCTTCATTGACAAACAGACCAATCTGAGCAAGTGCTTCGGGTTCGTCAGCTACGACAATCCAGTGTCGGCGCAGGCCGCCATCCAGGCCATGAACGGCTTCCAGATCGGCATGAAGAGGCTCAAGGTGCAGCTGAAGCGCTCCAAGAATGACAGCAAACCCTACTGATCGTACCCAGGGCAGGGGCCTTCCCCCTGGCTCTGTGTTAGCACTGCTAGGAACAAATCTTCATGCCTGTTTGCTCATCGTTAGCCTAGCATGTCCTCATGGTGTTGAAAACCGACTCCAAACTCCTCTTCCTCCCGGctactcctcctcatcctcccaccATTGTCTCTAAAGCTCGCCtgaccaataggctacctggGCACACACCCCGCTGACCTTTGACCTATGACATTTGACCTTAGCTCAACATGATTGGGtgtatccaaaatggcaccctgctCCCTATATGGTTGCACTGTTTCTGCCCAGAGCCTTTTTGACCAGTGCAAGTTACTGCACTTTATAGGGAAGAGGCTGCCATTTTGGAAACATAGCTGTTTTTTTTGCATGCTACTTCGTTTTTCTTTGTTCCTGTATAAAATGTGAGGGGAGGTCGGTCAAGCAAAATCAATGTGAAATCTTACCTGAGctcatttcatttaaaaaaaaaaatactttgttTTTGTACATTTTCTGCAAatgcgcaaaaaaaaaaaaaacttgttttaaaAGCCTGTGGGattgttatttttgttgttttgtaatttgCTTGTTTCTGTTgcttgtttctttttttttttttacctcttctcTCTCAGTATAAAGTTCACTTGAAAGTTTGAATACAGGGACTAGCACAGCGATGTGCTACTTTGTGCCATTAGCAATATGTCTGCTTCTGAAACAACAAAATAAtgctgtgtccaaaatggcacccccgtctcctatgtagttcactactttttACCCGGGCCTTGAGCTCtagtcaaaattagtgcactatgtagggaacagggtaccattttgGACCGCACCCTAAGACCACTCGACTCGCAACACTTATAAAAACTAGTCTGAATATCAACCAGAATTGCCCCTCAGTGCTCTGTTAGGTTTTTCACATTTTCAATTGTCACCAaggctgtttaaaaaaatataaaaaaagactCTTGGCTTTCATTTAATGATTATGTATTTGCCTATTTTTgttttataatttttttcaaaAATATTTGACGGCACAACGGAGGTAGATTTGCTCTTGACTACTAGGGGAAATTACTACCTACTACGAGTCTGAACTTTTTTTTAGAAATGATTCACAAATAGACAATCTGTGGTTTAAATGCACACTTAGATTACCTATATTTTATACCATTGAATCTATAGAAGTTTAAAGCTAAGTAAAACAGAAACCCAGGTTAACTTTGGGGTTCTTTTTGTAGATTATGTTGTAATGTCATAGGGTCTAagtgtatatgtttttaaatgggttggggggtggggggggtcaacAACACAGCCTTTCAAAAAAAGAAAACTCGTTACTAGCGGTGATGTAATTGATACTTACGTGTTGTCAGAATTCCTTTCTGGGTTATTTGCTATTTTTAACCTCTGCAACTTTTTGTTCAGTTGAGTAGAATGTCATTGTCTCATCTTGGGGAATATATATATGACTAAATTTGTTTTTTTCCTACATTAACAGAAAATAGTTTAAATTTAGTGTTAAATTCTCATGGtcgtgagatttttttttttttttgaatttcttGTTGATGATTTCATAAATGGATGTTTTTGCTTATGGATGCCTCATATTGCAAGATAATGTCTGTTACCACAGAAGACAGACGGGGTGTTTTTGTTTAAAGTGCCCATGTGTCAAACTCGcagtctattttttattttttttattttgaacttTCTTACAATATGCTTTCATGTGAGTGCCCAATTTCTCAACACACACTTTGTTCTGTGACAGTAAGAACACTGGGAGCCCCTGAACGTGAAATCACACAGGGGAATTTTTAttagatctcacacacacacacacacacacaatgtatttgTTAGTGATAAGATAGTTGAAatccaacatttaaaaaaaatagaaaattcCTTTAATCTTAACCGGTCACACAGAATCTGTGTTAACACTGTTGAACCCCCCTCCCACACCAAAAGTGTTGGTTTACACAAGCATTCCATGTTTCGGCATAAAGTTTACTACTCAGAACAGAAGTGTCTTTATTGGGTTGATAATGGACCAGCCTACTTTCTGTTAGTTGTACTGCAGAGATGATGGGACAGCTCAAATCATTTACATCCAGCCCCCAAAGAAAAGTTCCCCCAAAAATATGCGTACCTGGTcccatattcacaaagcgtctAGGATCAGGTTCCACCTGTTCGTGTGATCTTATTCATTATATGATACAAGCTCTACAGCTGATCCTAAATCGGCACACCTACTCTACGGCGCTTTATGAATGCGACCCAGAAGGCGCTAAACAAGGGTCGTCAACTCAGGGTCCTTCGTGTTTGAGATTCAGCTCTGTGTGGAAGATGCCAAGCACTGCCTACGGTGTCGTTTTCTCAACAGACTTGGGATTAACAAGCCACAAAAtgcatttttcatttttttttcattttttttttttaaacttgcaaATCACCCAAGATGGCACcagtttgttgtttttttagctTGAAAGTTCTAGCAGCACTTGAGAAGTTTCGAAGTGTTTGTTGAATGGTAGCGATTTGGTTTTGTCTGTTTATAAGCAGAAATATTGGAGGCAATgtaaacttctttttttttttgcaaatctgTTTAGTTTTTTTGAAGCATGGGTTGGTGGCACTTCCCAGAACTACCAAGGTACCACTAATAAACATTATTTTATGTTGAATAAGATGGGGAATGTGCTTTTTGCAGTGAGTTTTTCTATCCCAATATACAACACTCAGTGCCATATATCTAGAAACTGCCTACACAGATGCTATTAGGCCATGGTTTAGGGACTAGAGATTACTGCAGTTAGGAACGCTCAGTTTGCTTTTCTTATAATATACATACCAGTGTGTCATTAAGGCTAAATCACCCGCTGTGTTTTTTCACTTTGTGATGTTATTGCTTGAACTGGTACGTGATTGTACTGAATTTTAACACATTGGCAAGTCATTTTGTGAATATTATCATACATTGAACAAcccaaacctttttttttttttttttgaagacaAATCATCCTGTTAGTGAGTGGACAAAGTTGAGTGCTTTGCGGTACAGTCACAGACAATGTATTGCTATAATATGAATGCCTAGTTGTCGGGTAAAATGGTAAAGTTACTGTatattgatttattgatttatAGAATAGTAATCCTTTTCACGTTAACCAAAACCTGGGTAGTGTCGCATTATTAACATTGACTATATAACAGTTTGTTAAACAATTTGGTATGTAGGCTACAACAAACTGTTAACAAATGCTAGTAAATATTTTAATTGATTATAATGGGTAGTTATACAACTGTATTGTAAAGTGTTACCGTAAATGTTGAAATATAAGCACAATATAAATCACATGGGTCAGGGTATAGGAACTAGAAACTCCCACTTCGGGGGCTTCCGTcacaaccattttttttttaggaCTAATTCCAAATGTCAGCCTATTCCctgcgtagtgcactacttttgaccagggcccattaatctggtcaaaagtagtgcactatgtaaggaatagggtgccccTTAGGACTTTTCTCAGTATCTCTATCACTGGTCACCGTTTTTTCTATTCTCATACTCTGAAGTGCTGTTTGACAAAGTGTGGTAGCTTTGCATCGCTTAGATATTGTCATGGTCAAAAATCTCTGTCCTTTTTTTTCCCTCTCTGTACCGTTTTTTTTTTCCCCTTATCTGATGATTAAATAATTGATAGGACTTCATGTTCTTCTCCACATAAATTATTTGATAGATGTTTGTTGTCTTGAGAAAAGCCAAAGTTGCGGTCCATCTTCATGTTGATCTGTAAAACATTTACAGTAGTGATTTTGTTTTTAATTCAACTTTTGAAATTTGGGTgggatttgaaaaaaaaaaaatggaaaaaaaaaatgacaaactGGCTCTTTCCAATTTCTACAATACTGGTTGTGCATATGTATTTTGTACCAGTGAAGCTTTTTTAATATTGGGAAtaattaaagaaaaaaatatatattggaaaaaaaaaatgtctgtcctCTCTAAGGCCCTCGCCTTGAATGTGCTAGTCTTGAGTTTGGCTTCTTGGTGGTTGTCAGTGATAACATTTCTGataagtttttttgtttttttttgtttcttaaaTAAATAACCTTTAATTTTGATTTAATTACCTTGCTTTCTACATGTTCCTCACTTCGTTATTGTTTCTatattggggggtggggggggtggggatcCTCTAAAATCGTGGTCAGTTTCATGTTAGTGCTGTGCTCTGTCCACATGGTTATTATAAATGACCATCTGGGCTTATTATAGACAACTTGTATGGATAGATAAATGTCTTAGTTTAATATTTGTTTAGTTTCTGGGCTTTTTCCTTTTACCTGTTGGTAGATATTTCAATTTCCCATAGAAGCAGTGGTGTGTagttggaaatcagtcaatgTTTTATTTGGTAAATGTTTGTTCATGTGTGGTGTGTTTCTTTGCCTCTGTCTCCAAAATTAAACCATTTTTCCCTAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234201 lncRNA upstream 8623 94706318 ~ 94706532 (+) True G206927
TU234195 lncRNA upstream 12388 94702509 ~ 94702767 (+) True G206921
TU234157 lncRNA upstream 71987 94638173 ~ 94643168 (+) True LOC110500246
TU234182 lncRNA upstream 80609 94634196 ~ 94634546 (+) True G206910
TU234181 lncRNA upstream 82393 94632563 ~ 94632762 (+) True G206909
TU234239 lncRNA downstream 25581 94796315 ~ 94796559 (+) True G206960
TU234284 lncRNA downstream 113430 94884164 ~ 94903947 (+) True G207002
TU234320 lncRNA downstream 164089 94934823 ~ 94935153 (+) True G207035
TU234288 lncRNA downstream 179725 94950459 ~ 94959350 (+) True LOC110500336
TU234290 lncRNA downstream 192384 94963118 ~ 94964143 (+) True G207006
XR_005039097.1 mRNA upstream 4723 94708184 ~ 94710432 (+) True LOC118943818
XM_021577568.2 mRNA upstream 13440 94686845 ~ 94701715 (+) True LOC110500275
XM_021577546.2 mRNA upstream 49286 94638157 ~ 94665869 (+) False LOC110500246
XM_021577617.2 mRNA downstream 5206 94775940 ~ 94813234 (+) False LOC110500303
XM_021577610.2 mRNA downstream 6350 94777084 ~ 94813234 (+) True LOC110500303
XM_036959770.1 mRNA downstream 44042 94814776 ~ 94872439 (+) True LOC110500328
XM_036959829.1 mRNA downstream 119604 94890338 ~ 94950324 (+) False LOC110500336
XM_036959818.1 mRNA downstream 119604 94890338 ~ 94955068 (+) False LOC110500336
TU234200 other upstream 8907 94705946 ~ 94706248 (+) True G206926
TU234180 other upstream 82888 94631829 ~ 94632267 (+) True G206908
TU234120 other upstream 152931 94557169 ~ 94562224 (+) True G206850
TU233702 other upstream 277473 94402591 ~ 94437682 (+) True LOC110500139
TU233553 other upstream 613283 94100979 ~ 94101872 (+) True G206389
TU235944 other downstream 1457059 96227793 ~ 96228463 (+) True G208404
TU236415 other downstream 1841695 96612429 ~ 96613459 (+) True G208836
TU237298 other downstream 2715742 97486476 ~ 97486772 (+) True G209586
TU237326 other downstream 2847883 97618617 ~ 97619089 (+) False G209591
TU237386 other downstream 2927377 97698111 ~ 97699776 (+) True LOC110500822

Expression Profile