RNA id: XM_036959786.1


Basic Information

Item Value
RNA id XM_036959786.1
length 2955
RNA type mRNA
GC content 0.50
exon number 16
gene id LOC110500336
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94890338 ~ 94959350 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGTAGTTAGTAAGCAGCAGTAATGCTGTGTTCAACTACTTGTGGGAACTTGGAAACTCGGAAATGtccgacttgctaactggttatAGTTATACACGTGCCGTGTTGAACGACTCATCAAGTCGGACATTTCTTAGGTCATAGTTCCGACTAGCATTTTAACGCGGCCTAAGTAGGCAGGCACCCCTCACGAGCGATCTATTGTGATCATCGGTTCGCACAGCTGGTCTGTTCTCCTACCGAAAAGGGAACGGAACACTCGCTACGGCTTCTTTTCCACCAGGTTCTAACTTCGAATCCTCAATAGTCATGCTGGAAGCGACACCTTCGCAGATTTAGGCGACATTATTGGAGATAATAAACTAGCACACGCAGACAACAAAGTATTCCTCTTTTTACGGCGTGTGGAAAGACTGCATCCGGACTGAAAAGAAACTCCGGGGACGGGGACACTGGTCGGAACAACGCACATCGTTTCTGACCTCCCCTGCCAAAGAGCACCATGGAGAAGATGAAGCGGTTTAGGAGGAGGCTGTCCCAGACTCTGAGAGGGAGTCAGACCATCGATGAGTCTCTGTCTGAACTGGCTGAACAGAAGACTATAGAGGAGAACGGCATCAAGGACAGCGGTgaggCAACAGGGACCGTGGTGCACGGACTTCCCCCCTCGGCCCACAGTGTTCACTCCTTCCTGCACCAGTACACTAGTTCCTTCAAGAAGCCCCCTCTGCGGAGACCCCAGAGCGTCATAGGTGGAGGAGGGCTAGGGTCTTTCATGGCCGTGCAACGCAACGGCAGCCGCCTTgaCATCGTCCATGAGAATATGAAGATGGGTTCTGATGGAGAGAGTGACCAGGCATCAGGGACCAGCTCAGATGAGGTTCAGTCTCCCACAGGGGTGTGTCTGAGGAACAGGGGCAACCGACGCATCTCTGCAGAGgacctGAACAAGCGTCTGTCCTTACCTGCTGACATCCGTATTCCAGATGGTTACCTGGAGAAACTACAGCTCACCAGCCCCTCCTTCGACCAGCCCCTCAGCCGCCGCTCCCGAAGAGCATCATtgTCTGAAATTGGATTCGGGAAGCTTGAGACATACATCAAACTGGACAAGttaggagagggaACGTATGCTACAGTGTTTAAAGGAAGGAGCAAACTGACAGACAACCTGGTGGCTCTGAAGGAGATCAGACTGGAGCACGAGGAGGGAGCACCTTGCACTGCTATCAGAGAGGTGTCCTTACTGAAGGACCTGAAACACGCCAACATAGTGACGCTGCACGACATCATCCACACAGACAAGTCCCTGACGCTAGTCTTCGAGTACCTGGACAAGGACCTGAAGCAGTACATGGACGACTGTGGGAACATCCTGAGCATGCAGAACGTCAAGATCTTCTTGTTTCAGATCCTGCGAGGTTTGTCCTACTGTCACAGACGGAAGGTTCTACACAGAGATCTGAAGCCTCAGAACCTGCTCATCAACGAACGAGGAGAACTCAAACTGGCCGACTTCGGTCTGGCCCGGGCCAAGTCAGTCCCCACTAAGACGTACTCCAACGAGGTGGTGACGCTCTGGTACCGACCTCCTGACGTTCTACTCGGATCCTCTGAGTACTCCACACAGATAGACATGTGGGGTGTGGGCTGTATATTTTATGAGATGGCTGCCGGGAGGCCTCTGTTCCCTGGCTCTACTGTGGAGGACGAACTGCACCTCATCTTCAGACTGCTGGGAACACCCTCAGAGGACAGCTGGCCTGGCATCTCCTCCATGGAGGAGTTCAAGTCCTACAAGTTCCCCAAGTACAAGACACAGCCCCTCATCAACCATGCTCCCAGGTTGGATACCGATGGCATTGAACTGCTGCTGTCATTTCTCAAATACGAGTCCAAGCAGAGGATGTCTGCAGATGAGTCGATGAGACAGCCTTACTTCAGGAGCCTggggacacacgcacacacactgccagaGAgCATATCCATATTCACCCTGAAGGAGGTTCAGCTGCAGAGAGATCCAGGCTATAGGAACTCTAACTATCCTGAGTCAGGCAACGGCAAGAACAGAAGGCAGAGCATGCTCTTCTAAAGACTCCTAGCGGTGGTGTGTTCAACAGATGAGGATGTCTTACCTACCTGAAGAGTTATACAGACAGAGATGGTTCAGTCTCAGAGATGGTTGTCTACAAGGGGCCacgggggtgggggggtaggaGGACCAGCCCTCTGTGCGTTCCCCCTTTCTGCCAGGGGCCCCTATCTACAGTACTGTTGGACCCCTGGGGGCCCAGGCCAATGTGAAACTGGCTAAAAATAGAGATgtttatacattttatatttattgGGGATAAGAGAGAAGTTGCTGCTACAAATCCAACTACTGTCTAGAAGATTCTAACTGGCTCAGTCActttaaaagaaaacatgcaaTGTGTATAGATGTTTTATTATTTGGAAGTGGTGGCATTGTGGTGGTTTTGTCCATTGATTTCCATTATTTCCACCTCAACACTCCAACTGTGACAAACAGACAAACCGAGATCTTTGCTGTAGCAGAGTCTGACGTTTTGGGATTTTCTCTGTTCTGTTGCCGTACGTGGTGCTGTATTCAAACACCAACCTCCCATATTTCTGGACCATTCAATACACATCACAAGATACTGTTGAGGCCAGTACAGCCCTAGTGGATGGTGACGATCGTAGCGATTGTTCTATCTCTATGGTGACCATATCCACCTGCTTCCAACCTGAAAGACTGTACCTCAATTTTGATAGAAGGTATGGGAGCAGTGATCGGCTTGGTGAAAAATGGTTCACATAGTTGTtagtaggtacagttgaagtcagaaatttacatacaccttagccaaatacatttaaactcagtttttcacaattcatgacatttaatcctagttaaaatgtcctgttttaggtcagttaggatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234239 lncRNA upstream 93781 94796315 ~ 94796559 (+) True G206960
TU234228 lncRNA upstream 132671 94757358 ~ 94757669 (+) True G206949
TU234223 lncRNA upstream 150819 94739311 ~ 94739521 (+) True G206944
TU234221 lncRNA upstream 155182 94734956 ~ 94735158 (+) True G206942
TU234218 lncRNA upstream 161649 94728467 ~ 94728691 (+) True G206939
TU234290 lncRNA downstream 6830 94963118 ~ 94964143 (+) True G207006
TU234334 lncRNA downstream 57639 95013927 ~ 95015281 (+) True G207048
TU234359 lncRNA downstream 73326 95029614 ~ 95029813 (+) True G207073
TU234385 lncRNA downstream 129170 95085458 ~ 95085817 (+) True G207098
TU234386 lncRNA downstream 129550 95085838 ~ 95086106 (+) True G207099
XM_036959770.1 mRNA upstream 17901 94814776 ~ 94872439 (+) True LOC110500328
XM_021577617.2 mRNA upstream 77106 94775940 ~ 94813234 (+) False LOC110500303
XM_021577610.2 mRNA upstream 77106 94777084 ~ 94813234 (+) True LOC110500303
XM_036959700.1 mRNA upstream 119606 94721413 ~ 94770734 (+) False LOC110500292
XM_021577677.2 mRNA downstream 21929 94978217 ~ 95005158 (+) True hal
XM_021577687.2 mRNA downstream 50990 95007278 ~ 95013804 (+) True LOC110500357
XR_005039112.1 mRNA downstream 64125 95020413 ~ 95024445 (+) True LOC118943829
XM_036959892.1 mRNA downstream 102076 95058364 ~ 95092306 (+) True LOC110502411
XM_036959898.1 mRNA downstream 168210 95124498 ~ 95140955 (+) True LOC110502428
TU234200 other upstream 184092 94705946 ~ 94706248 (+) True G206926
TU234180 other upstream 258073 94631829 ~ 94632267 (+) True G206908
TU234120 other upstream 328116 94557169 ~ 94562224 (+) True G206850
TU233702 other upstream 452658 94402591 ~ 94437682 (+) True LOC110500139
TU233553 other upstream 788468 94100979 ~ 94101872 (+) True G206389
TU235944 other downstream 1271505 96227793 ~ 96228463 (+) True G208404
TU236415 other downstream 1656141 96612429 ~ 96613459 (+) True G208836
TU237298 other downstream 2530188 97486476 ~ 97486772 (+) True G209586
TU237326 other downstream 2662329 97618617 ~ 97619089 (+) False G209591
TU237386 other downstream 2741823 97698111 ~ 97699776 (+) True LOC110500822