RNA id: XM_036960029.1


Basic Information

Item Value
RNA id XM_036960029.1
length 9159
RNA type mRNA
GC content 0.55
exon number 43
gene id LOC110502465
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 95372098 ~ 95416864 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCACACCATTCAAGTTTAACCAACCGACTCCAGTGAACTACATTGCTACTCTACTCCTCAAGTGCTACAGAGCGAACTGGACCATTTTTCAAAAAACGACATTCTTCTCTGAGCATATCTATTAAGAGGCAGCGACTACATTTGTCAAGCCACTGCCAATTAAAAACCCGCGACAGGCTGCGTTGCAGTAACAAGGACTGTAAATCGGATCAATTCATCATTGTCCTGACAAGAAGAGGCTTCTTCACAAGGACATCCGAAAAGTCTCcgggacacttttttttttttgaaactcTCTTCTCCCAAGTTTTGAACTTTTACCACAGCAAGTGCGCTCGAGCTTGACATCGACAAGCTAAACTTTTTTTTGCAGATAACTTCACACATCGGTCTGACTTGCTGTATAAAAAGGGACACACGGAAAACCGCCAACATGACGAGCAATAACACACATTACTACGACGACAGCCAGCCACCGCAGCACTACCAGGGCACGGACAGCTTCGAGGGGGACGAGGAAGACGAGATGCCGGCTACGGAGAAAGATCTTGCCGAGGATGCACCATGGAAGAAAATCCAACAGAACACCTTTACAAGGTGGTGCAACGAGCATCTCAAGTGTGTCAATAAGACCGTGACAGACCTCCAGAAGGATTTTGGCGACGGGTTAAAGCTCATTGGGCTCCTGGAGGTTCTGAGCCAGAAAAAGATGTACAAAAAACACCACACTAGACCCAACTTCCGACAGATGAAATTGGAAAATGTGTCCGTCGCTCTGGAATTTTTGGACAGGGAACACATCAAGTTGGTGTCTATTGACTCCAAGGCCATCGTGGACGGTAATCTGAAACTGATCCTAGGTCTGATCTGGACTCTGATCCTGCACTACTCCATCTCCATGCCCATGTgggaggatgaggatgatgaggaggctAAGAAACTGACCCCCAAGCAGAGGCTGCTGGGATGGATCCAGAACAAGGTGCCTGAGCTACCCATCAACAACTTCCACCGTGACTGGAGGGATGGCAAGGCCCTGGGAGCCCTGGTAGACAACTGTGCCCCTGgTCTGTGCCCCGACTGGAAGGCCTGGGACCCTAACCACCCCGTGGAGAATGCCAGAGAGGCCATGCAGCAGGCTGACGACTGGCTGGGCGTGCCCCAGGTGATCGCCCCTGAGGAGATTGTCGATCCGGATGTGGATGAACACTCAGTGATGACCTACCTGTCCCAGTTCCCCAAGGCTAAGCTGAAGCCTGGCGCTCCCCTCAAACCTAAAGGCGTTCAGCTGTACCCCAACAAGGCCAAGGCATACGGACCTGGTATTGATTCCCACGGAAACATGGTTCTGAAGCCAGCAGTGTTCACAGTGGAGACTCTGCAGGCAGGTCAGGCCGAGGTGCTGGTCTATGTGACCGATCCCGAGGGACACACTGAGGAGGCTACGGTGGTCTTCAACAATGACAAAAACAGGACCTACACTGTCACTTATGTACCCAAGGTTGAGGGTGTCCACAAGgtaAAAGTGCTGTTTGCAGGGCAGGACATTGACAAGAGTCCCTACACAGTGAACGTTGCCAAGGCCATGGGCGATCCCAACAAGGTCCAGGCCAGAGGACCAGGGCTGGAACCTACCGGCAACGTGGCCAACAAACCCACCTATTTCGACATCTACACCGCAGGTGCTGGTAATGGTGATGTGAGCGTTGTCGTCGTGGACCCTGAGGGGAAGAAAGACACAGTGGAACTGATTTTGGAAAACAAAGGGGACAGTGTTTTCCGTTGCACCTACCGGCCCATGTTGGAGGGCCCCCACACCATCCACATCCTGTTCGCGGGTCAGGAGATCCCCAAGAGCCCCTTCAAAGTTCAAATCGCAGAGGccaTCAATGCCAACGCGTGTCGTGCCACGGGCCGAGGCCTCCAGCCTAAGGGGGTGAGGGTGAAGGAGGTGGCAGACTTCAAGGTCTTCACCAAGGGAGCCGGCAGCGGAGAGCTCAAAGTCTCCGTGACTGGACCAAGTGGAGCAGAGGCACCAGTGAAAGTTAAGGATATTGGTGATGGTGTCTATGAGTGTGAATATCTCCCTGTCCAGACTGGTAAATACACAGTTAACATCACCTGGGGAGGACAACTCATCCCACGCAGTCCCTTCGAGGTGGAGGTGAGTGAGGAGGTTGGCCCTCAGAAGGTGAGAGCTTGGGGCCCCGGGCTGCTGACCGGCCAGGTGGGCAAGTCAGCTGACTTCGTGGTCGAGGCCATCGGCACCGAAGTAGGAACTCTGGGTTTCTCCATCGAGGGTCCGTCCCAGGCTAAGATAGAATGTGACGATAAGGGTGACGGCTCCTGCGATGTCCGCTATTGGCCCACTGAGCCAGGTGACTACGCCGTCCATGTCATCTGTGATGACGAAGACATCAAGGACAGCCCCTTCATGGCCCACATCCTGCCTGCAGCCAATGACTGCTTCCCTGAGAAGGTGAAAGCTTTCGGTCCAGGTCTGGCGCCCACTGGGGTCATTGTAAACAAACCGGCAGAGTTCACCATCGATGCCCGCCAGGCTGGCAACGGCCACCTCAAGATCTACGCCCAGGATACAGAGGGTGTCACCATCGACATTAAGATCACTGACAAGGGAGACGGCACCTTCCTGTGTGTGTACGTCCCCACCAAGCCCATCAaacacaccatcatcatcacctggGGAGACGTCAACGTGCCCAACAGTCCCTTCAGGgtGATTGTTGGAGAGGGCTGCCACCCAGCCAAGGTCAAGGTGTATGGTCCAGGAGTGGAGAAGACAGGACTCAAGGCAAACGAGCCCACCTActtcactgtggactgtgccgaGGCTGGACAAGGAGACATTAGCATTGGGATCAAGTGTGCTCCAGGAGTGGTGGGCCCAGCCGAGGCTGACATCGACTTTGACATCATCAAGAACGACAATGACACCTTCACTGTCAAGTACACGCCGCCCGGCGCTGGGAAATACACCATCATGGTGCTGTTCGCTGAGCAGGAAATCCCCATCAGTCCATTCAGAATTAAGGTTGATCCTTCCCATGATGCTGGCAAAGTGAGGGCTGAGGGCCCAGGACTCAACAAGACAGGCGTGGAGGTGGGTACTCCGACCCACTTCACCATCTTTACCAAGGGAGCAGGCAAGGCCAAGCCTGAGGTCCAGTTCACAGCAGCAGGCCTGAAGGGGGAAGCTGTGAGAGACTTTGAGATCATCGACAACCATGACTACTCCTACACCGTCAAGTACACCGCCGTTCAACAGGGCCAGATGACCATCTCCGTCACCCACGGAGGGGACCCCATTCCCAAGAGCCCCTTCAATATTACTGTGGCTCCTCCTATAGATCTGGGAAAGGTCAAGGTGACAGGACTCGACACCAAAGTAGAGGTGGGCAAGGACCAGGAGTTCTCCATCGACACCAAGGGAGCTGGTGGGCAGGGCGAGGTAGCCGTCAAGATGACCTCACCCTCCGGCCGACCAATCCCCTGCAAGCTGGAGTCAGACGCGGCCAATGGCGCCCACTCTGTGAAGTATATCCCCCCAGAGGAGGGGCCTTACAAGGTGGACGTCAGCTACGATGGGAACCCTGTCCCTGGATCCCCCTTCGCAGTGGAGGGAGTGATGCCTGCCGACCCTTCAAAGgtGCGCGCTTATGGCCCAGGCCTGAAGGGAGGCATTGTGGGTAAACCAGCTCCATTCGCCATCGACACCAAAGGAGCGGGCGCCGGTGGGCTGGGCCTGACGGTGGAGGGGCCGTGCGAGGCTAAGATTGAGTGCCAGGACAACGGAGACGGAACTTGCTCAGTTTTCTACTTGCCCACTGAGGCTGGAGAGTACGCCATCAACATCCTGTTTGGAGAGCAGCACATCCCTGGGTCTCCCTTCAAGGCAGCTGTGAAGCCATGTCTCGACCCCAGCAAGGTAACAGCCAGTGGGCCTGGCCTGGAGAAGGCCAAGGCAGGGGAACCAGCCTACTTCACAGTGGACTGCACCAGTGCTGGAGAGGCTGAACTCACCATTGAGATCGTCTCTGAGTCCGGGGCTCAGGCCGAGGTCCACATCCAGAAGACTGCAGATGGGACCTTCTCTGTCACCTACATCCCACCCTTCCACGGCACACACACCATTACCATCAAGTACGGGGGTCATGTTGTACCCAAGTTCCCCGCGGTCATCCAGGTGGAGCCGGCTGTGGACACCAGCGGTGTgcaggtctatggaccaggggtGGAGCCCAGAGGAGTCCTCAAGGAGGTCACCACCCACTTCATCGTGGACGCCCGTAAAACGACCAAGATTGGCGGTGACCACGTGAAAGCACGCATCATCAACCCTTCAGGCGCCAACACAGACGCCTACATCACAGACAAGGGAGACGGAACCTACAGAGTGGAATATACCGCCTTCGAGGACGGTATGCACCTGCTGGAGGTGTTGTACGATGACGTGGCGGTCCCTAAGAGTCCGTTCAGGGTGTCTGTGGTGGAGGGCTGTGACCCCACCCGGGTCAGGGCCTACGGGCCAGGCCTGGAGGGAGGACTTATCAACAAAGCCAACTGCTTCACCGTTGAGACCAGggGTGCTGGTACTGGAGGCCTGGGCCTGACCATAGAGGGAGCCTCCGAGGCTAAGATGACCTGTAAAGACAACAAAGATGGCAGCTGCAGCGTAGAGTACGTTCCCTTCACACCTGGAGAGTACGACGTCAACATCAACTTCGGAGGACACCCCATTCCAGGCAGTCCGTTCCGGGTGCCAGTGAAGGATGTGGTGGACCCTAGTAAGGTGAAGTGTTCAGGTCCAGGGCTGGGGGATGGAGTCAGAGCCCACGTACCTCAGGCCTTTACAGTGGACGCTACCCAGGCTGGAAAGGCAAAGGTGGAAGTACAGCTAACAGGACCAtcagGTTCTGCTGAGCCTGTTGCTGTGAAGAACAACGGTGACGGCACACATACGGTCAACTACACCCCGGCTCAGGACGGCCCTTACACTGTGTCTGTCAAATACGGAGATCAGGAGGTCCCTCGCAGTCCATTCAAGGTGAGGTCCCAGCCTGGTCATGATGCCAGTAAGGTGCGTGCCAGTGGTCCAGGCCTGGATAAATCAGGTGTGGCCGCCAGCCTACCAGTGGAGTTCACCATCGATGCCCGTGACGCAGGAGAGGGACTGCTCACTGTACAGATACTGGATCCCGAGGGCAAGCCAAAGAAGGCCACTATCCATGACAACAGAGATGGGACATACACAGTGTCCTACGTACCAGACTCCACCGGCCCCTACACCATCACCATCAAGTATGGAGGAGATGAGATCCCCTACTCCCCCTACCGCATCTCAGCTCTGCCCACTGGAGACGCCAGCAAGTGTCTGCTTACTGTGTCTATCGGAGGCCGTGCCCTGGCGTCGGGTCTGACCAAGATGCAGGCGCACGAAGAGACCATCGTCTCCGTTGACGCAAAGGCTGCAGGGAAGGGCAAGGTGACCTGTTCGGTGACGACCCCAGCGGGGGTGGAGCTAGACATGGACGTTCAGGAGAATCGTGACGGAACCTACGACATCTACTACACGGCTCCGGAACCTGGGAAATACGTCATCACCATCCGGTTCGGAGGACAACACATCCCCAAGAGCCCCTTCCATGTAACGGCCACCAAGGAGCCTGTTGTCCCTAGCGACGGTATGGATCAGTTCAGACCTCTTAACCTGGTCATCCCGTTCTCCGCTCAGCAGGGACCGATCACAGGTGAGGTGCGTATGCCCTCCGGTAAGACGGCCCGTCCCCATATCACAGACAACAAGGATGGGACCATCACAGTCAAGTTCAACCCTACTGAGAAGGGTCTGCATGAGATGGACATCAAGTATGAAGGAAACCACATCCCAGGAAGTCCCCTCCAGTTCTACGTCGATGCTATAAACAGTGGCCTGGTGACAGCGTATGGGCCTGGGTTGTGTCATGGCACCGTCAACAAACCCGCCACCTTTACCGTCGTCACCAAGAACGCTGGAGAAGgtgGTCTGTCCCTGGCTGTGGAAGGTCCCTCTAAGGCAGAGATCAGCTGTAAAGACAATAAGGACGGTACCTGTACTGTGTCCTACCTGCCCACCTCACCAGGAGACTACAACATCATTGTCAAGTTTGACAACAAGCACATCCCCGGCAGTCCCTTCACTGCTAAGATCACAGGTGATGACTCTATCAGGACGTCCCTGCTCAACGTGGGAACAGCAGCAGATCTATCCCTGAAGATCACAGAGTCTGACCTGAGCCTGCTGACAGCTAGCATCAGAGCTCCATCAGGAAACGAGGAGCCCTGTCTGCTCAAGAGACTGCCCAACAGACACATCGGTATCTCCTTTACCCCTAAGGAGGTGGGAGAGCACGAGGTGAGCGTGAAGAAGGGTGGTAAGCACGTGACCAACAGCCCCTTCAAGATCCAGGTTGGCCAGTCAGAGATTGGCGAGGCCAGCCGGGTCAAGGCCTTCGGTAAAGGACTGGTGGAGGCACACACCTTTGAAATGGCTGAGTTCTTTGTGGACACTAGGAATGCAGgTTATGGTGGTCTGGGATTGTCTATCGAGGGCCCGAGTAAAGTGGACATAAACTGTGAGGATGTGGAGGATGGGACTTGCAGAGTCAGTTACTGCCCCACAGAGCCAGGCAACTACATTATCAACATCAAGTTCTCTGATAAGCACATCCCTGGAAGTCCTTTCACGGTGAAGGTAACAGGAGAAGGAAGAATGAAGGAGAGCATCACCAGGAAGAGAACAGCCCCTTCCATCGCCTCTGTCGGCAGCGCCTGTGGCCTCAACCTGAAAATCCCTGGAAACTGGTTCCAGATGGTGTCAGCCCAGGAGAGGATGACTCGTACGTTCACACGCAGCAGCCACACGTACACGCGCACAGAGCGCACGGAGATCAGCAAGATGAGGGGCGGCGAGACGAAGAGGGaggtgagggtagaggagagcacCCAGatgggaggagcaggaggaggcagTCCCTTCAGAGATGTGTTTGGAGACTTCCTGGGCAGAGAGAGTCTGGCTAGCTTCGCTGGTATACCCGCTACAGCCACACCAACGCCTGGTGAGACAGTTACCCAGGGTAGTATGACAGCCCAGGTGACCAGCCCCGGGGGTAAAACAGAACAGGCAGAGATCGTAGATGGAGGGGATAGCACCTACAGCGTCCGCTTCGTACCCCAGGAGATGGGGGCACACACGGTCAACGTGAAGTACAGCGGGCAGCATGTCCCCGGAAGTCCCTTCCAGTTCACTGTTGGGCCCATGGGAGAAGGAGGGTCCCACAAGGTCCGGGCCGGAGGCactgggctggagagaggagtggcAGGAGTACCAACTGAGTTCAGTATCTGGACGCGTGAGGCTGGTGCAGGAGGCTTGTCCATCGCAGTAGAGGGGCCCAGTAAGGCTGAGATCTCATTTGAAGACAGGAAGGATGGATCCTGTGGGGTGGCCTACATCGTTCAGGAGCCAGGTGACTATGAAGTGTCTATCAAGTTCAACAACGAGCACATCCCCGACAGCCCCTTcatcgttcccatagcaacgctGTCTGACGAGGCACGCAGACTCACTGTCACCAGCCTGCAGGAGAAGGATCTGAAGGTGAATCAGGAAGCGTCGTTCGCTGTGCAGCGTAACGGGGCGAGGGGCGTGGTCGATGCTAAGGTCCACACCCCATCTGGCTCAGCTGAGGAGTGTTACGTCACCGAGCTGGACAGTGACAAGAACGCGATCCGCTTCATTCCACGTGAGAACGGCGTGCACTCCATTGACGTCAAGTTCAACGGCAGTCACATCCCCGGTAGCCCGTTCAACGTGCGGGTTGGGGAGGCAGGACAGGCTGGAGACCCAGGCATGGTGACAGCATACGGGCCTGGACTGGAGGGAGgatctacaggcgtGGCCTCTGAGTTCGTAGTGAACACGTGTAACGCGGGGTCAGGTGCCCTGTCTGTGACCATTGACGGCCCCTCTAAGGTCAAGATGGACTGTTCTGAGTGCCCCGATGGCTACAAGGTTATCTACACTCCTATGGCCCCCGGCAGCTATCTCATCAACATCAAATACGGAGGACCCAACCACATAGTGGGCAGCCCCTTCAAAGCCAGagtcacaggtaCCCGTCTGTCCGGTGGTCACAGCCTTCACGAGACGTCCTCTGTGCTGGTAGAGACGGTCACTAAGACTTCCAAGGTTGCCGGAGCGTACAGCTCCTTATCGTCCTCATCCAAACTGACCTCAGATGCCAGCAAGGTGGTGTGTCGAGGCGCAGGGCTCTCTAAGGCTCTGGTGGGACAGAAGAACATATTCAATGTAGACTGCAgcaaagcagGCTCTAACATGTTGCTGGTGGGAGTGCACGGCCCCACGACCCCATGTGAAGAGGTGTACGTCAAACACATGGGCAACCGCCTCTACAACGTCACCTACACTGTCAAAGACAAGGGAAACTACATTGTTATCGTCAAGTGGGGCGACGATAGTGTCCCCGGCAGCCCCTTCAACGTTGCTGTGCCTTGAACGAACGTCAAGAAACACCCGAGCCCTGATCCCCACCACACCTTGCCCCACTGCACCGCTACACTCCTCGGTGGACCGCTGTAGAACCGCCTCTCTCAACGTGCACTAAAGAATCCAAGGACATTTTTAGCCTATAAaggaaaaaatataaaaaatcagATTTCAGCCTTAATTTAAAGAATGTGCCAAAAGCTTGTTGTATTAACTCAGCTACTGTTTTAGAGCAAAGTTCTAGGTGACTAGTGTGGTGtcatagagatggaaagaggcgACCGCCCTCTATACAACTATGTGTACTGGAGACATGCTCCAAGTCATGTGATGTTGGTCTAAGTATTTTAACTGGGACAAGATCCCCGCCAATAGAAAGGGATTATTGTGTAGCAATGAAATGAAATGGCATAACGTGTGAGTGTTTAGGACATAAGATAAGTTGCTTTTTAAACAGTATTAAAGTGTGATATTATATGATTTTGTATGCTTAAAGAAATTTGAAAAGGTATTTTTATTAAATTAACCAATTCCTTGGTAAGTCTTGGCAGAACTAATAATAAAGATTCAACTGCTACCTTGGCAGAA

Function

GO: NA

KEGG:

id description
K04437 FLNA; filamin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235046 lncRNA upstream 5483 95366212 ~ 95366615 (+) True G207650
TU235038 lncRNA upstream 26193 95345509 ~ 95345905 (+) True G207643
TU235006 lncRNA upstream 75141 95296651 ~ 95296957 (+) True LOC110502458
TU234487 lncRNA upstream 123992 95247640 ~ 95248106 (+) True G207165
TU234460 lncRNA upstream 167274 95204014 ~ 95204824 (+) True G207146
TU235081 lncRNA downstream 29299 95446163 ~ 95479177 (+) True G207678
TU235095 lncRNA downstream 57734 95474598 ~ 95475564 (+) False G207690
TU235097 lncRNA downstream 57734 95474598 ~ 95475116 (+) True G207690
TU235099 lncRNA downstream 63602 95480466 ~ 95480753 (+) True G207692
TU235101 lncRNA downstream 64647 95481511 ~ 95481742 (+) True G207694
XM_036959999.1 mRNA upstream 12224 95296622 ~ 95359874 (+) False LOC110502458
XM_036960035.1 mRNA downstream 65459 95482323 ~ 95605825 (+) True LOC110502472
NM_001195009.2 mRNA downstream 262062 95678926 ~ 95686855 (+) True grp94
XM_036934462.1 mRNA downstream 271697 95688561 ~ 95698740 (+) True LOC110502494
XM_036960052.1 mRNA downstream 314993 95731857 ~ 95747216 (+) True LOC110500475
XM_036960053.1 mRNA downstream 334015 95750879 ~ 95763143 (+) False LOC110500485
TU234200 other upstream 665850 94705946 ~ 94706248 (+) True G206926
TU234180 other upstream 739831 94631829 ~ 94632267 (+) True G206908
TU234120 other upstream 809874 94557169 ~ 94562224 (+) True G206850
TU233702 other upstream 934416 94402591 ~ 94437682 (+) True LOC110500139
TU233553 other upstream 1270226 94100979 ~ 94101872 (+) True G206389
TU235944 other downstream 810929 96227793 ~ 96228463 (+) True G208404
TU236415 other downstream 1195565 96612429 ~ 96613459 (+) True G208836
TU237298 other downstream 2069612 97486476 ~ 97486772 (+) True G209586
TU237326 other downstream 2201753 97618617 ~ 97619089 (+) False G209591
TU237386 other downstream 2281247 97698111 ~ 97699776 (+) True LOC110500822

Expression Profile