RNA id: XM_021580524.2


Basic Information

Item Value
RNA id XM_021580524.2
length 2036
RNA type mRNA
GC content 0.45
exon number 5
gene id parietopsin
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 95628449 ~ 95632062 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTATTCTATTATCTGTATATTCTAAATCTATTCTATTATCTGTATATTCTAAATCTATTCTATTATCTGTATATTCTAAATCTATTCTATTATCTGTATATTCTAAATCTATTATCTCTTCTTTGAGAGAGATTGTTCATGGTTGAAaaagtgaagaaaaaaaagtgGTCTTGTTGGAAAAACTCAcattgagagaatgagagaatttTATCCAAAGCCTGTATAGTTTACATAAATGTCCATCttgtaatttgtattttttttctttggGAGTGTGTTTTTGATTTGATTATGAATTAAAGATGGCAACAACCTAATCTTGTTCCTGTTTTAGGCCTACTTTTGTGTATGCCATATAGGGCTAGATTTCAGTTATCCACCCTTTCCTTGCCTCAGAGAAAAGTCAGGAAAGCAACTATAATTTATCTAACCTCTTGTCTCTCAATGTAAATGTATATTGAATTGACCCAGTTGGCTAAAAATAATTTAGAAAATGCACTTTTGACACAGACAGGGTATATCCTAGGCCCAGGGCTGTCTCTGGGCCTACACTTTGCACCTTTTTCAATACGGAACTCTCAATAAATCCTGATCAGATCAATCAATATAATCGTACAAATCATGTTAGGGAGCAATTTCCCAAATGGGTTTTTAAGTTGGTGTTGAGCAGCATGTTCTCAATGACAGATAATCCAAAATGTAATAAGACATCCTGAATACAGAAGCTATTTAACTAGGATCAGACATAATAAGATCAAGCTATGACGTTTGGGCTTTGATTGAGATGGGATACagacagcaaaggacctttttTCTGTAGTTTCTTGGTCATATGGTGGAGAGCGTGCGTTTTAAATtaagcaccatggacagcaccaCTGCCGTCGGCACACCTTGGCGCTTCGGCCCGACTTTGAACTCTACTTCTCCGGGCTTCAAATCTAGTACTGTGGCGCCCACGATTTTTCCACGGGCAGGCTACAGCATCCTCTCCTATCTTATGTTCATCAATGCCATTTTCTCTGTTTTTAACAATACTCTGGTGATAACGGTGTTGGTGAAGAATCGTACTCTCCTCAATCCAATGAATGTGATCATCCTCAGTTTAGCCGTGTCCGATTTGATGATAGCCTTGTGCGGTTCGTCGATAGTCACCATTACCAACTATCATGGTTCATTCTTTCTTGGCGACGAGTTCTGCATCTTTCAAGGATTTGCTGTGAACTATTTCGgtCTGGTGTCTATGTGCACGTTAACACTGCTGGCGTACGAGCGCTACATCGTGGTGTGTAAGCCCATGGCAGGCTTCAAGATGAACGTACGTCGGAGCTTTCAGGGGCTCCTGGGGGTCTGGCTGTTCTGTTTGTTCTGGGCCGTGCCCCCACTGCTGGGTTGGAGCTCCTATGGACCCGAGGGCGTCCAGACCTCCTGCTCTCTGGGCTGGGAGGAGAGGTCCTGGAGTAACTATAGTTACCTGATCCTGTACACGCTGTTCTGTTTCCTCCTGCCTGTCGCAATCATCATCTACTGTTACGCCAATGTCCTCACCTCCATGAGACGGcttAACCGTAGTACGGAGTTGCAGGGCGGTCGTCCCTGTCTGCAGGACAACGAGCGGGCGGTAAGGATAGTGCTGGCCATGATCGGGGCCTTCTTTGTCTGCTGGCTGCCTTACACAGCCCTGTCCGTGGTGGTTGTGGTGGACCCAGAGCTCCACATCCCTCCGCTAGTGGCTACCATGCCTATGTACTTCGCCAAGACCAGTCCCGTCTACAACCCCATCATCTACTTCCTAAGCAACAAGCAGTTCCGTGATGCTACTCTGGAAGTCCTCTCCTGTGGGCGCTTCATTTCCCACGACCCGGCCACCGACACCATCCCCATGCACTCCATGACCCTGAGGACCACGGTGGGCAGAAGGGTGGGCAGAAAAAAACAAGGGATCAGTGCACACAGCAGGGTGCTTCCTCTgtgactcctctctcctccatctcctaaatctccatctcctccatctcctaaatctccatctcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235505 lncRNA downstream 3443 95624090 ~ 95625006 (-) True G208010
TU235502 lncRNA downstream 7546 95620681 ~ 95620903 (-) True G208007
TU235498 lncRNA downstream 12044 95616090 ~ 95616405 (-) True G208003
TU235493 lncRNA downstream 24550 95603454 ~ 95603899 (-) True G208000
TU235490 lncRNA downstream 26577 95601605 ~ 95601872 (-) True G207997
TU235352 lncRNA upstream 325 95632297 ~ 95633415 (-) True G207878
TU235359 lncRNA upstream 2105 95634077 ~ 95634352 (-) True G207885
TU235354 lncRNA upstream 2549 95634521 ~ 95635415 (-) True G207880
TU235511 lncRNA upstream 21286 95653258 ~ 95695097 (-) True G208014
TU235348 lncRNA upstream 48879 95680851 ~ 95686864 (-) False G207876
LOC118944198 mRNA downstream 357177 95271093 ~ 95271272 (-) True LOC118944198
XM_036959906.1 mRNA downstream 503902 95097379 ~ 95124547 (-) True LOC110502417
XM_021577703.2 mRNA downstream 608020 95015675 ~ 95020429 (-) True LOC110500368
trnay-gua mRNA downstream 618758 95009602 ~ 95009691 (-) True trnay-gua
XM_036959842.1 mRNA downstream 653536 94959943 ~ 94974913 (-) True LOC110500345
XM_036960040.1 mRNA upstream 3924 95635896 ~ 95664503 (-) True LOC110502485
XM_021577854.2 mRNA upstream 71387 95703359 ~ 95721115 (-) True LOC110500466
XR_002475062.2 mRNA upstream 250159 95882131 ~ 95883679 (-) True LOC110533932
XM_036960073.1 mRNA upstream 419330 96051302 ~ 96092405 (-) True LOC110502500
XM_036960080.1 mRNA upstream 498339 96130311 ~ 96370206 (-) False LOC110502509
TU235358 other downstream 18663 95604228 ~ 95609786 (-) True G207884
TU235447 other downstream 104222 95523968 ~ 95524227 (-) True G207959
TU235317 other downstream 219735 95377723 ~ 95408714 (-) True G207858
TU234691 other downstream 852093 94762662 ~ 94776356 (-) True G207340
TU234581 other downstream 998710 94629437 ~ 94629739 (-) True G207249
TU235350 other upstream 50065 95682037 ~ 95686864 (-) False G207876
TU235346 other upstream 50651 95682623 ~ 95686864 (-) True G207876
TU235579 other upstream 197402 95829374 ~ 95832362 (-) True G208077
TU236021 other upstream 502105 96134077 ~ 96134472 (-) True G208472
TU236221 other upstream 789894 96421866 ~ 96422224 (-) True G208658

Expression Profile