RNA id: XM_036960040.1


Basic Information

Item Value
RNA id XM_036960040.1
length 1910
RNA type mRNA
GC content 0.50
exon number 13
gene id LOC110502485
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 95635896 ~ 95664503 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGCATTCTGTTTCTGTATTTATATACATAACAGCGCTGTAGCCGCATGCATTTACCCAAATCCCACGACGTAGACAGAAGCTACCGACAACCCGAAGGGAACGATATCCATGACCATGACGCCCTTGTCACTGTCATTTTCGAGTCTGTTAAAGAATAAGGATTCTCTGCAGAAGTGTTTCAATTGCTACAATGCCTTCCACGCGCAGCACGACATACCACGGTACTTCAGAAACCGAACGCCGTGGAAGAAGGCTCGGTTATGGGAGCGGAATTTCAGTGCGGTGTCCCACAGTAGGTTCATCGGCCAAGTGTTGGCGAAACAACCCTTTGCCAAAATCTATGCGAAGGAAGCTACTATGTGTACCACTTCTGCAAGTGGCCAAGACATGACCAACTGGTTGTGGTCTATTTACAACGAAACCAAAAAACAGACCGAAGCCCTGATCCCTGTGATATCTAAGAACAGTGTGAACCCCGACACCATCTTTGCCAACAACGAGATGAGTCTGGGTGACATCGAGATCTATGGGTTTGACTATGACTACACTCTGGCCTTCTACTCCAGACACCTCCACACCCTCATCTTTAACATCGCCAGGGACATCCTCATCCAGGAGCACAGGTACCCTGAGGGCTTGAGAGAGTACGAGTACATCCCTAACTTTGTTGTCAGAGGACTGCACTATGATGTCCAAAGGGCTTTGCTGATGAAGATAGATGCCTTTCACTACATACAGCTGGGAACCGTATACAGGGGTCTTCACCCGGTACCAGACAAGGAGGTGATTGCCATGTACGATGGTTGCCATGTCCCTCTGGAGAATATGAGTGACTTCTATGGCAAGagtTCCCATGGCCACACAATGAAACAGTATATGGACATCTTTTCCCTCCCAGAGATGAACCTTCTGTGTTCCGTTaatgactacttcatgaagcacAATATCGACTACGAGCCCGTCCACCTCTACAAAGACGTCAAGgaaGCGATAGGAGATGTCCATGTCAAGGGTATTATGTATCGGGCTGTGGAGGCAGATATCGagaacTATATTTCCTATGGAGAACAGACTCATGCTGTGTTGAAGAAGCTTTATGAGGATGGAAAGAAGATGTTCCTCATCACTAACAGCCCCTTTGACTTTGTGGATCGGGGAATGAACTACATCGTTGGGAAAGACTGGAGAGATCTGTTTGACATTGTCATCGTACAGGCCGACAAACCTGGCTTCTTCAACGACAGGAGAAAGCCCTTCAGGCGAGTGACAGATAAAGGGGTGCTGCATTGGGACAGGATTCACAAGCTGGAGAAGGGGAAGATCTACAAACAGGGAAACCTCTATGAGTTCCTGAGACTGACTGGCTGGAGGGGGTCCAAGGTGTTGTACTTTGGAGATCACATTTACAGTGACCTGGCAGACCTGACCCTGAAGCACGGCTGGAGGACTGGCGCCATCATCCCTGAGCTGAGGAAAGAGATCAAGATCATGAACACTGAGGAATGTGTTCACCTGATGACCTGGTTACAGGGTCTGACTGGGCTGATAGAACACATGCAGgtCCACAGAGATCCAGCTTCTCAAGCTGTCGTCCAGGAGTGGATCGAAGAGAGAGAAGCCATGAGATCGCAGACAAAGGACATCTTCAACGGCCAGTTTGGGAGTCTCTTCCGGACCTACCACAACCCCACCTACTTCTCCCGCCGCCTGTCTCGTTTCGCTGACATCTACATGGCGTCCCTCAGCTGTCTGCTCAACTATGACTTCCATCACACCTTCTTCCCCCGTCGTACGCCCCTGCAACACGAGTCACCCTTCTGGCCCGAGCAGACCAGCGCCGGGGCCCTGAAGATGCCCTTCATACCCCCACAGAACCACAACTGAAGAGTAGAAcaggaaatggggggg

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235354 lncRNA downstream 481 95634521 ~ 95635415 (-) True G207880
TU235359 lncRNA downstream 1544 95634077 ~ 95634352 (-) True G207885
TU235352 lncRNA downstream 2481 95632297 ~ 95633415 (-) True G207878
TU235355 lncRNA downstream 3834 95631656 ~ 95632062 (-) True parietopsin
TU235505 lncRNA downstream 10890 95624090 ~ 95625006 (-) True G208010
TU235348 lncRNA upstream 16348 95680851 ~ 95686864 (-) False G207876
TU235357 lncRNA upstream 33620 95698123 ~ 95702054 (-) True G207883
TU235534 lncRNA upstream 52979 95717482 ~ 95718864 (-) True G208037
TU235542 lncRNA upstream 65946 95730449 ~ 95730692 (-) True G208045
TU235543 lncRNA upstream 66872 95731375 ~ 95731596 (-) True G208046
XM_021580524.2 mRNA downstream 3924 95628449 ~ 95631972 (-) False parietopsin
LOC118944198 mRNA downstream 364624 95271093 ~ 95271272 (-) True LOC118944198
XM_036959906.1 mRNA downstream 511349 95097379 ~ 95124547 (-) True LOC110502417
XM_021577703.2 mRNA downstream 615467 95015675 ~ 95020429 (-) True LOC110500368
trnay-gua mRNA downstream 626205 95009602 ~ 95009691 (-) True trnay-gua
XM_021577854.2 mRNA upstream 38856 95703359 ~ 95721115 (-) True LOC110500466
XR_002475062.2 mRNA upstream 217628 95882131 ~ 95883679 (-) True LOC110533932
XM_036960073.1 mRNA upstream 386799 96051302 ~ 96092405 (-) True LOC110502500
XM_036960080.1 mRNA upstream 465808 96130311 ~ 96370206 (-) False LOC110502509
LOC110500576 mRNA upstream 969338 96633841 ~ 96640404 (-) True LOC110500576
TU235358 other downstream 26110 95604228 ~ 95609786 (-) True G207884
TU235447 other downstream 111669 95523968 ~ 95524227 (-) True G207959
TU235317 other downstream 227182 95377723 ~ 95408714 (-) True G207858
TU234691 other downstream 859540 94762662 ~ 94776356 (-) True G207340
TU234581 other downstream 1006157 94629437 ~ 94629739 (-) True G207249
TU235350 other upstream 17534 95682037 ~ 95686864 (-) False G207876
TU235346 other upstream 18120 95682623 ~ 95686864 (-) True G207876
TU235579 other upstream 164871 95829374 ~ 95832362 (-) True G208077
TU236021 other upstream 469574 96134077 ~ 96134472 (-) True G208472
TU236221 other upstream 757363 96421866 ~ 96422224 (-) True G208658

Expression Profile