RNA id: NM_001195009.2


Basic Information

Item Value
RNA id NM_001195009.2
length 2965
RNA type mRNA
GC content 0.51
exon number 17
gene id grp94
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 95678926 ~ 95686855 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCCTTGTCAAGGCGGTTGTGTGTGCGCTTTTATACGGCTGAGGTATAGGTTGTTAACCCCACGTCTTTTGTCTGAAGATAATTGTAACAAAATGAAGCGGATTTGGTTTATTGGGCTGCTTTGTGCACTTTTAGCATTCGCATCTGTGAGAGCAGAAGATGAGCTTGATATCGACGGCGCTGTGGAGGATGATCTGGGAAAGAGCAGAGATGGATCCAAGACGGATGACGAGGTGGTGCAGAGAGAGGAGGAGTCTATCCAGCTGGACGGGCTGAACGCAGCTCAGATCAAAGAGATTAGAGAGAAGTCAGAGAAACACGTCTTCCAGGCAGAGGTCAACCGCATGATGAAACTCATCATCAACTCGCTCTACAAGAACAAGGAGATCTTCTTGAGGGAGTTGATCTCCAACGCCTCTGATGCTTTGGATAAGATCCGACTGTTGTCTCTGACCAATGAGGATGCGCTGGCAGCCAACGAGGAGCTCACCATCAAGATCAAGTCTGACAAGGAGAAGAACATGCTCCACATCACAGACACGGGTGTCGGCATGACAAAAGAAGACCTGATTAGAAACCTGGGTACTATCGCCAAGTCGGGCACCAGCGAGTTCCTGAACAAGATGACAGAGGTTGAAAGTGAGGGCCAGTCCACCTCGGAGCTGATTGGACAGTTCGGAGTGGGCTTCTACTCCGCCTTCCTGGTTGCTGACAAGGTGATTGTGTCTTCGAAGCACAACAACGGCACGCAGCACATCTGGGAGTCCGACTCCAATGAGTTCAGTGTGATCGAGGACCCCCGTGGAGACACCCTAGGAAGGGGCACCACCATCACGTTGGTGATGAAGGAGGAGGCTACAGACTACCTGGAGCTGGAGACCATCAAGAACCTGGTCAGGAAGTACTCTCAGTTCATCAACTTCCCCATCTATGTCTGGTCCAGCAAGACTGAGACTGTTGAGGAGCCCATTGATGAGGACACCGAGGCAGAGGAGAAAGATGCAACTGAGGATGAGGTagaggtggaagaagaggaggatgagaaggaggacAAGCCAAAGACAAAGAAGGTTGAGAAGACTGTGTGGGACTGGGAGCTGATGAACGACATTAAGCCGATCTGGACGAGACCAGCCAAAGAAGTAGAGGAAGACGAGTACAAGGCTTTCTACAAGACCTTCTCCAAGGACACAGACGAGCCCCTGTCCCACATCCACTTCACAGCCGAGGGTGAGGTCACCTTCAAGTCCATCCTGTTTGTCCCCGCTGCCGCCCCCAGGGGCATGTTCGACGAGTACGGAACCAAGAAGAACGACTTCATCAAGCTGTTTGTCCGTAGAGTCTTCATCACCGATGACTTCAATGACATGATGCCCAAATACCTGAACTTTGTCAGGGGAGTGGTGGACTCTGATGACCTGCCCCTGAACGTGTCTAGAGAAACCCTGCAGCAACACAAGCTGCTCAAGGTGATCCGTAAGAAGCTGGTGCGTAAGACCCTGGACATGATCAAGAAGATCGCCGAAGAGCAGTACAACGACAAGTTCTGGAAGGAGTTTGGCACCAACATCAAGCTGGGTGTGATCGAGGACCACTCCAACAGGACCCGTCTGGCTAAGCTGCTGCGTTTCCAGACCTCCAACAGCGACACGGTGCTGGCCAGCCTGGAGCAGTACGTGGAGAGGATGAAGGACAAGCAGGACAAGATCTACTTCATGGCCGGGACCAGCCGCAAGGAGGCGGAGTCTTCTCCCTTCGTAGAGAGTCTGTTGAAGAAGGGTTATGAGGTCATCTACCTGACCGAGCCAGTAGATGAGTACTGTGTCCAGGCTCTGCCAGAGTTCGATGGCAAGCGCTTCCAGAACGTGGCCAAAGAGGGCATCAAGTTTGACGAGAGTGACAAGGCCAAGGAGACAAGGGAGGCCCTGGAGAAGGAGTATGAACCTCTCACCACCTGGATGAAGGACAGCGCCCTAAAGGACAagATTGAGAAGGCCATCCTGTCCCAGAGGCTGACCAAGTCCCCCTGTGCTCTTGTAGCCAGCCAGTACGGCTGGTCTGGTAACATGGAGAGGATTATGAAGGCTCAGGCCTACCAGACCGGGAAAGACATCTCCACAAATTATTATGCTAGCCAGAAGAAGACATTGGAAATCAACCCGAAGCACCCTCTCATCAAGGAGATGTTGAAACGTGTTTCTACGGATGGCGAGGACCAGACTGCCTCAGACCTGGCCATGGTGCTGTTTGAGACAGCCACGCTGCGCTCGGGCTACCAGCTCCAAGACACCAAGGCCTACGGGGACCGGATTGAGCGCATGCTGCGGCTCAGTATGAATGTGGACCTCACCGAACAGGTTGAGGAAGAGCCAGAGGAGGAGCCGGAGGAGGAGCCTGAAGAGCCAGCAGAGGATGAAGCgactgaggaagaggaggaaattcCAGATGAAGAAGCGGCAACTGACAAAGATGAGTTATAAAGCACTGTAAATGAGGAAGGGTGTCATGATGGACCTATCCTGGAGCTGAGCCACAACAAAGGCCCAAGTCCTACCTGGAAACCCAGACAGAATGACACTTCTGTTCATGTTTGTTTCTACTCCATTATCTGTGTTAAGTGAAAACAATGGTGAAATGTCGGTGTGATTCGGTCTGTCTAGCCAAGACCACCTGCTGGCTAGGATACCCAACAGCCACCAATCAAGACTAGCCCGGTCCCACATCCGTTTGTGTGCTCTTGCCCAacggatctgggaccaggctaagtcGAGGCCATCGGCCACACTTTACTCACTCTGTGGAGGGTCCTGAAGGGATGAGATTCTTTTTGAAAGGCTGGTGtgtttttgtttctgtttttGTTACATTCCTCATGATTGTAAATTTGTTAATATTTAACTGAGCTGGAAAAGATGTGATCGACACTGTCCCTTGATCCCATTGAATAAATATTTCCTTGAAAAA

Function

GO:

id name namespace
GO:0006950 response to stress biological_process
GO:0006457 protein folding biological_process
GO:0035889 otolith tethering biological_process
GO:0005524 ATP binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K09487 HSP90B, TRA1; heat shock protein 90kDa beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235161 lncRNA upstream 15055 95662647 ~ 95663871 (+) True G207749
TU235206 lncRNA upstream 16623 95661016 ~ 95662303 (+) True G207786
TU235104 lncRNA upstream 45527 95632209 ~ 95633399 (+) True G207696
TU235183 lncRNA upstream 53920 95624201 ~ 95625006 (+) True G207770
TU235178 lncRNA upstream 61802 95616882 ~ 95617124 (+) True G207766
TU235228 lncRNA downstream 12427 95699282 ~ 95703736 (+) True G207797
TU235230 lncRNA downstream 19599 95706454 ~ 95720856 (+) True G207798
TU235238 lncRNA downstream 36770 95723625 ~ 95723889 (+) True G207806
TU235251 lncRNA downstream 77437 95764292 ~ 95764518 (+) True G207818
TU235254 lncRNA downstream 82444 95769299 ~ 95769552 (+) True G207821
XM_036960035.1 mRNA upstream 73101 95482323 ~ 95605825 (+) True LOC110502472
XM_036960028.1 mRNA upstream 262062 95372098 ~ 95416864 (+) False LOC110502465
XM_036960029.1 mRNA upstream 262062 95372098 ~ 95416864 (+) True LOC110502465
XM_036960003.1 mRNA upstream 319052 95296627 ~ 95359874 (+) False LOC110502458
XM_036934462.1 mRNA downstream 1706 95688561 ~ 95698740 (+) True LOC110502494
XM_036960052.1 mRNA downstream 45002 95731857 ~ 95747216 (+) True LOC110500475
XM_036960053.1 mRNA downstream 64024 95750879 ~ 95763143 (+) False LOC110500485
XM_036960057.1 mRNA downstream 64134 95750989 ~ 95763143 (+) True LOC110500485
XM_036934469.1 mRNA downstream 198732 95885587 ~ 95888114 (+) True LOC118936882
TU234200 other upstream 972678 94705946 ~ 94706248 (+) True G206926
TU234180 other upstream 1046659 94631829 ~ 94632267 (+) True G206908
TU234120 other upstream 1116702 94557169 ~ 94562224 (+) True G206850
TU233702 other upstream 1241244 94402591 ~ 94437682 (+) True LOC110500139
TU233553 other upstream 1577054 94100979 ~ 94101872 (+) True G206389
TU235944 other downstream 540938 96227793 ~ 96228463 (+) True G208404
TU236415 other downstream 925574 96612429 ~ 96613459 (+) True G208836
TU237298 other downstream 1799621 97486476 ~ 97486772 (+) True G209586
TU237326 other downstream 1931762 97618617 ~ 97619089 (+) False G209591
TU237386 other downstream 2011256 97698111 ~ 97699776 (+) True LOC110500822

Expression Profile