RNA id: XM_036960052.1


Basic Information

Item Value
RNA id XM_036960052.1
length 2001
RNA type mRNA
GC content 0.41
exon number 11
gene id LOC110500475
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 95731857 ~ 95747216 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGCAGCAAAAGATGCCATTTTCATTCAACATACTGAAAGGATTCTCTACATTGCACGTGGATTATAAAACATTCACCGGGCAATTAAGCGTTTTTCATTTTTCGTTTCACTTTTTCCAGTCTCTTGTATTTATAATTAAATAGAATTCTTTCGTTATTTGGGAAGCACATTAATTATACATTTTATTTCGTATTTCTCATAGATTTGACATCAGGAATGAGTATAGAAATTCCTGAAGGATTGACGGAGCTGTTGCAGAGCTTTACCGTGGAAGTGTTACGGAATCAGCCGGGAGATTTGCTCGAGTTCGCGTTGCAGTATTTCACCCAACTGAAGGACAGTGAGACTACCGGGGCCGCGTTCGGCAATGACCAACATTCGGCTTCGCGACCCAGTGGGAAAGCGGTCAATTTCAACGACGAAGCCATGCAGATCGATTCTGAaaatggagaggaagaggagagtgacGAAGAGGAATTCATTGCTCCAGTGATGAGTCGATTCATTAGAAGAGCATCAGTTTGTGCCGAGGCGTTCAACCCTGATGAAGacgaggaagacaaagaagagaggGTCACCCATCCTAAAACAgacgaacagagacagagactacAGGAGGCTTGCAGAGACATTCTGCTGTTCAAAAACCTGGACCCGGAACAATTTTCCCAAGTACTGGACGCCATGTTTGAGAAGTTCCTTGAAGTAGGAGAACACATCATAGATGAAGACGACGATGGCGACAATTTCTACGTCATTGAAAGagggacCTTTGACATCTATATGAGGGTTGATGGTGTAGAGAAGACCGTGGGAGCCTATGATAACAAGGGGAGCTTTGGGGAGCTGGCCCTGATGTACAACACCCCCAGGGCTGCTACCATCATCTCCACCTCGCCCGGAGCCCTCTGGTGCCTGGATCGTCTGACATTCAGGAGGATCATCGTGAAGAACAACGCGTTGAAGAGGAGACTGTACGAGGAGTTCATTGAATCACTTCCACTGTTAACATCATTAGAGCTTTCAGAGAGAATGAAGGTGGTGGATGTGTTGTCTTCTAGAGCCTTCTGCGATGGAGAACAGATTATCTCTCAGGGCGATCTAGCAGATTGTTTTTATATAGTTGAATCTGGTCAAGTTAGAATCACCATGAAGAGAACCAGGACGAAAAAGGACCAAGAGGATGTGGATATAGCTACATGCTCCAGGGGGCAGTACTTTGGAGAACTGGCCCTCGTCACCAACAAACCCAGAGCTGCTTCAGCTTATGCTGTGGGAAGTGTCAAGTGTTTAGTTATGGACGTGCAGGCGTTTGAGAGGTTGCTGGGCCCCTGCATGGACATCATGAAGAGAAACATTGCAAATTACGAAGAGCAGCTGGTTACTCTGTTTGAATGTAGCACCACTGACATTGAGGAGATAAACCCATGAAAACCAGAAGGGGGAAAAAGACAGTGAGATGCATGATGACGATGTCATAAATTGGTTAGTGGGAAGTGGGAAAAGTCTTGTCACTTTGTGTGTAACTTTTCCATGATCTACCTTTGTCAAGTATTGTTTTCTTTCACAAAATAGGAAACTGGGTATGTTAGATAGGTACAGGATCGATTCCAGATAACATACAATGGTTTTTGAAGGATCGTTGACTTAGGAGTAATATTTTTTATTGAAGCTAAGATATCTGTGTTATTCCAAAACGTAAATGTTCACAAGTTCTGTcctcacaactttccttttttgatttattttattttattttattttttttacaaatgtacatTTTATTGAATTTATCAAAGACATTTTAAGTCACTTGTTTTGTATATTATTGATCACTATTATGTTATGTAAAATATAAATTGGCCTTTTCAGATTCTCTGATAATGTCATATTTCTTCTAAAATTTTGTGCCAAAGGTCATTACATCCTTACTAGATTATGAGCGTGTACACAAATCACCAATATCCATACCTTGCACATTAAAGTGTTCATAATTTGA

Function

GO: NA

KEGG:

id description
K04739 PRKAR; cAMP-dependent protein kinase regulator

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235238 lncRNA upstream 7968 95723625 ~ 95723889 (+) True G207806
TU235230 lncRNA upstream 11001 95706454 ~ 95720856 (+) True G207798
TU235228 lncRNA upstream 28121 95699282 ~ 95703736 (+) True G207797
TU235161 lncRNA upstream 67986 95662647 ~ 95663871 (+) True G207749
TU235206 lncRNA upstream 69554 95661016 ~ 95662303 (+) True G207786
TU235251 lncRNA downstream 17076 95764292 ~ 95764518 (+) True G207818
TU235254 lncRNA downstream 22083 95769299 ~ 95769552 (+) True G207821
TU235257 lncRNA downstream 29966 95777182 ~ 95807479 (+) False G207822
TU235256 lncRNA downstream 30571 95777787 ~ 95810614 (+) False G207822
TU235263 lncRNA downstream 30571 95777787 ~ 95800589 (+) False G207822
XM_036934462.1 mRNA upstream 33117 95688561 ~ 95698740 (+) True LOC110502494
NM_001195009.2 mRNA upstream 45002 95678926 ~ 95686855 (+) True grp94
XM_036960035.1 mRNA upstream 126032 95482323 ~ 95605825 (+) True LOC110502472
XM_036960028.1 mRNA upstream 314993 95372098 ~ 95416864 (+) False LOC110502465
XM_036960029.1 mRNA upstream 314993 95372098 ~ 95416864 (+) True LOC110502465
XM_036960053.1 mRNA downstream 3663 95750879 ~ 95763143 (+) False LOC110500485
XM_036960057.1 mRNA downstream 3773 95750989 ~ 95763143 (+) True LOC110500485
XM_036934469.1 mRNA downstream 138371 95885587 ~ 95888114 (+) True LOC118936882
XM_036960062.1 mRNA downstream 245990 95993206 ~ 96011204 (+) False LOC110500522
XM_021577932.2 mRNA downstream 254114 96001330 ~ 96011204 (+) False LOC110500522
TU234200 other upstream 1025609 94705946 ~ 94706248 (+) True G206926
TU234180 other upstream 1099590 94631829 ~ 94632267 (+) True G206908
TU234120 other upstream 1169633 94557169 ~ 94562224 (+) True G206850
TU233702 other upstream 1294175 94402591 ~ 94437682 (+) True LOC110500139
TU233553 other upstream 1629985 94100979 ~ 94101872 (+) True G206389
TU235944 other downstream 480577 96227793 ~ 96228463 (+) True G208404
TU236415 other downstream 865213 96612429 ~ 96613459 (+) True G208836
TU237298 other downstream 1739260 97486476 ~ 97486772 (+) True G209586
TU237326 other downstream 1871401 97618617 ~ 97619089 (+) False G209591
TU237386 other downstream 1950895 97698111 ~ 97699776 (+) True LOC110500822

Expression Profile