RNA id: XM_036960057.1



Basic Information


Item Value
RNA id XM_036960057.1
length 3109
RNA type mRNA
GC content 0.46
exon number 11
gene id LOC110500485
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 95750879 ~ 95763143 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGTGTAATGTAATTTATTCGTGTTTACAGTCCAGTTTAGACTGAACGAGTAGAGGAACCAAAGATGGATGCTAATAGAATGGAGGACTCATTTGATCGTCTAAAGGCTCTGCCCTCCTCACGTGACTGTCCCTCCACTCCCATGGAGTATGATGACCTgccagagctgcaggagttggaCGAGAGCTCGTCCTCTCCAGTCCTGCTCCATGTGGGGGCTGGTGTGTCCCGTCAGGAGTGTATAGCTGGTTCCCCTCatactaactggctgactgagcTGGCTATCATCGCTACCAGCCCTCAGAGCCCCCTGCTGCAGGAAGCTGCTCCCATCGAGAGGTCATCTCCTGTGCACATCTTTTCCACCAATCGTAGTTTACATTCCTACGCCCGCCCCCCCCTGGCCAGCAGTGCACCCAGCCCCTCTAGAGGTCACCTCAGGGAACGCAGCAGACGTGTCAGGGCCAGCAGTGAGTCAGAGTCTGGTGTTTTCTCTATGGCCTCCTTCTCTGATGATGAGGACATGGGCTGGTCACACTCCTGGCCCTCTACAGCCTGGCACTGCTTCCTGAAAGGCACCCGCCTTCGGTTCCACAGGGGCCTTAACAAGGAGTGGCAGGAGGCTGAAGACCTGGGGGACTCTGATGACGAGTCAGATGATGAGAGAAGGATGCCGTTCACCTCCCTCAAGAGCTATGGTTCTGAAGGTCTGAAGTTAGTGGCCCATGAGGACAATGTGTCCTACGGCCAGGCCGTCCTCAAACTCACCTTTGACCCCGGCTCGCCAGAAGAAGGCCTGTTAACGGCAGAGTGCAGATTTGATCACCCCTTCTTTGTGAAAAACAAAGGTTGGTCCTCATTCTACCCTAGCCTGACGGTGGTGCAGCATGGTATCCCCTGCTATGAGATTCAGGTTGGGGACCTGTGTCTTCCCCCGGGACACAGGGACACCATCAACTGTGATGACTCTGATGTCTTGGACACCTTCAGGAGttatGATTTCACTCCTCTGGACTCGTCAGCTGTGTATGTTCTGAGCAGCATGGCCAGACAGCGTAGGACCTCCCAGTCCAGTAGTGGCGCTGTCTCCCCCGACCCAGAGAAACTCTCCGGctccccccactcctcctctgccAGCAAATCAAACAGGAGCAATACCTCAGGGACGGTCCCCGGCGGGGCCACACCCACCAAATGCAAACGGCCAATGAACGCCTTCATGCTCTTCGCTAAGAAGTACAGGATGGAGTACACACAGATGTACCCTGGGAAGGATAACAGAGCCATCAGCGTGATCCTGGGTGAGAAGTGGAAGAAGATGAAGaacgaggagaggaggatgtacaCCGTGGAGGCCAAGGCTCTGGCTGACGAGCAGAAGAGACTCAACCCTGACTGCTGGAAACGCAAGAGAACCAACTCCgGGTCCCAGCAGCCCTAGATGACCTATGACCTCCAGACATGTGTTTGGTGTGGAGAGGTCAGAGGTGAACTGACCGACCAATCTGGCAAACCCACTATCTCTCTAGCCTGCTCCCAGatcagttttttttgttgttgctgtataTCCAGCTTCCTATGGTCATTGGCCTATAAGAAGGCAcaaaacagatctggaaccaggccaGTTACTATTTTTCTTTCTGCTTACCTGTCAAATCAACGAGACTTAACTGTGATGCGGAATACTCTTGCTTTTATAACCATatagacaggactacacacaTTTTAAGACAAAACAACAACTATGAACTATATATTTAAAAAAGCATCTAATCTAGTGTAACTAACAGTGCTTATATTTTGTTATATTTTAAATAACATACAGATATGCCTTATTATTCCTTTATAACTAAGGCTCAGTTTTATATTTGTTCAGGTAATTTCATATTTCGATGCTTGAAACCTTGAGATaggggttgcaaaattctggtaacctttaaaattattttttttaaatccctgtATTTCCAGGATTCCCGGTTGGAAGATTTCCGGAATGTGCATGAAATCCCACAtactccaaccaggatttctggaaaacctgggaattttgcgAGTTACTAGAATTACTGTACCCTACTTGAGACCCAGTGGTGCTAAGCTCGGTGAAGGAACAAGTAGCAGTGatacaaaatgtatattttttattgtaaaaagaaagaaagggaatttaaaaaaaaaagcattttctTCTCTTCTCAGCTTGTTGTTCATATTGATTATAGCTCCATATATTGCACAGATTGACAAACCCTTTCATACGTTGTATCATATTATCTGTGAGCTTGAAGGGCAATATAAAGTTTGTAATACATATTGCCCATCTGTGGCCTGATTTACCCTGAAACACGGAGAGGGACATTTTcattttctgttttgaattttttttttttgcattctgTGTCCTATTGAACATGACCACAGATACCCTGTTGTCTGATTCACGCTGTAGGGCTGACCCGAACCGTTCTGGCTTGGATATTTTaattttcacattgtccttttcTAGCATGGTTCAGTAGAGGATGTGTAACCAGGCCGTCTCAGTACGGATCGGCTCGGCCCTGTAGTAGGAATCAGCCATTTGTTTGCCAAGCCACCTGGCCGTGTGCCGATGATGGCTTACATTTGGGCACATGGAGGTTTTGCACACTCATCCGAACAGCACTTCAGGGCCAAGCGTTCACTGTAAGTGTTTTAATTTCTTTTTGCACTTTATATACATATGTAGTCTTATACAGTACAAGCAATTAAATGTATGCTAGTGGAAGCTATGTGTATATGGATTTAATGACACGGTAGGTATATCTAGATGACATCTATCGGTTTTCACTTTGACACAACCATGGCCAAACTATACATgtctagcctgagtgccagtcggTTTGTGCTCTGTGACATGACAATGAGTAACTTGGCAATAGAGTACAAACAGactgggacccaggctagtaCAAGTCATGTGATGTTCTGCTTGCAGGTTGCCATGGCGTTGAGTTTATACAGTTTTGTTGTTGATAATGTACAGGTCCACGCCCCACCAAACTGTTGCACAAAATATCATTGTATTATTATATCATTAATAAAAGTTTCAACTTGCAATCTTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU235238 lncRNA upstream 27100 95723625 ~ 95723889 (+) True G207806
TU235230 lncRNA upstream 30133 95706454 ~ 95720856 (+) True G207798
TU235228 lncRNA upstream 47253 95699282 ~ 95703736 (+) True G207797
TU235161 lncRNA upstream 87118 95662647 ~ 95663871 (+) True G207749
TU235206 lncRNA upstream 88686 95661016 ~ 95662303 (+) True G207786
TU235251 lncRNA downstream 1149 95764292 ~ 95764518 (+) True G207818
TU235254 lncRNA downstream 6156 95769299 ~ 95769552 (+) True G207821
TU235257 lncRNA downstream 14039 95777182 ~ 95807479 (+) False G207822
TU235256 lncRNA downstream 14644 95777787 ~ 95810614 (+) False G207822
TU235263 lncRNA downstream 14644 95777787 ~ 95800589 (+) False G207822
XM_036960052.1 mRNA upstream 3773 95731857 ~ 95747216 (+) True LOC110500475
XM_036934462.1 mRNA upstream 52249 95688561 ~ 95698740 (+) True LOC110502494
NM_001195009.2 mRNA upstream 64134 95678926 ~ 95686855 (+) True grp94
XM_036960035.1 mRNA upstream 145164 95482323 ~ 95605825 (+) True LOC110502472
XM_036960029.1 mRNA upstream 334125 95372098 ~ 95416864 (+) True LOC110502465
XM_036934469.1 mRNA downstream 122444 95885587 ~ 95888114 (+) True LOC118936882
XM_036960062.1 mRNA downstream 230063 95993206 ~ 96011204 (+) False LOC110500522
XM_021577932.2 mRNA downstream 238187 96001330 ~ 96011204 (+) False LOC110500522
XM_021577940.2 mRNA downstream 271077 96034220 ~ 96043570 (+) True LOC110500533
XM_036960132.1 mRNA downstream 1208248 96971391 ~ 97028188 (+) True LOC110500557
TU234200 other upstream 1044741 94705946 ~ 94706248 (+) True G206926
TU234180 other upstream 1118722 94631829 ~ 94632267 (+) True G206908
TU234120 other upstream 1188765 94557169 ~ 94562224 (+) True G206850
TU233702 other upstream 1313307 94402591 ~ 94437682 (+) True LOC110500139
TU233553 other upstream 1649117 94100979 ~ 94101872 (+) True G206389
TU235944 other downstream 464650 96227793 ~ 96228463 (+) True G208404
TU236415 other downstream 849286 96612429 ~ 96613459 (+) True G208836
TU237298 other downstream 1723333 97486476 ~ 97486772 (+) True G209586
TU237326 other downstream 1855474 97618617 ~ 97619089 (+) False G209591
TU237386 other downstream 1934968 97698111 ~ 97699776 (+) True LOC110500822

Expression Profile