RNA id: TU236019


Basic Information

Item Value
RNA id TU236019
length 1155
lncRNA type sense_over
GC content 0.61
exon number 1
gene id LOC110502509
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 96129727 ~ 96370206 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTACTGACAAACTGAAACGGTCGGTATAGCACACCCTTTTAATATAGGCCCCTCTAGGATCTATGACATCGGCAGAACCATCAGCTGGTAACTTTTCTCATGTCATGGTACTCCAGGTGAACAGACCATATTTGACTTCAGCCTTCAGCCTTTTTGACCAATGGCTTGGTTCAGAGGAAGTTGGAACACACTACAGGGTCTTTTTTGACCAATGGCTTGGTTCAGAGGAAGTTGGAACACACTACAGGGTCTTTTTTGACCAATGGCTTCGTTCAGAGGAAGTTGGAACACActaaaaggagaggaggagaggagtcagaaaaAGACATGCTAGTACTTTAGGTCTTATGAGTGTTTCTCTAATACAGTTAATTGAAAACAGGCCTAGTGTGTAAGATAATGAGGTCCTATGACTATAAGGCATAGTTCCTCAACCTAACTCAAAGACAGGATTCTTCCTCCACTACCAGATAAACTGACTACATAGATCACCAGGAGACAATATACTGTTTTTACTACTTATTGACTATTGATTCTCGTTTCAGTAacccccctccttccctttccAATAGACACAAAAAGTTCATTTTAgtttgcctttatttaaccaggtacgtcattgagaacacattctcttttACAGTAATGACCGTACAGGTACATGGTAACacaggatcacacacacacacacacacacacacacacacacacacacacacacacagtatacaatCTCTAAGCCATACAAGGAGGAACCATTTACTGTGAGGTGATTTTAAGGGAGCGGGCAGAGTAGCCCATAATGGCCCTAGCTTTGACAGCCAGTCTCCATcctagatggcaccctattccctatatagtgcactactttagaccaaggccctatagaaccctattccctatgtaatgcactactttagaccagagccctatagaaccctattccctatatagtgcactactttagaccagagccctaatagaaccctattccctatatataatgcactactttagacaagagccctatagaaccctattccctatgtagtgcactactttaaaccagagccctatagaaccctattccctatatagtgcactactttagaccaaggccttatataaccctattccctatatagtgcaatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU236016 lncRNA downstream 493 96127191 ~ 96129234 (-) True G208468
TU236015 lncRNA downstream 1654 96127169 ~ 96128073 (-) False G208468
TU236017 lncRNA downstream 2890 96125952 ~ 96126837 (-) True G208469
TU235902 lncRNA downstream 5139 96123042 ~ 96124588 (-) True G208368
TU235895 lncRNA downstream 12287 96109996 ~ 96117440 (-) True G208361
TU236022 lncRNA upstream 4966 96135847 ~ 96136489 (-) True G208473
TU236026 lncRNA upstream 12576 96143457 ~ 96143656 (-) True G208477
TU236028 lncRNA upstream 19979 96150860 ~ 96151134 (-) True G208479
TU236031 lncRNA upstream 30383 96161264 ~ 96161502 (-) True G208482
TU236035 lncRNA upstream 36811 96167692 ~ 96167923 (-) True G208486
XM_036960073.1 mRNA downstream 37322 96051302 ~ 96092405 (-) True LOC110502500
XR_002475062.2 mRNA downstream 246048 95882131 ~ 95883679 (-) True LOC110533932
XM_021577854.2 mRNA downstream 408612 95703359 ~ 95721115 (-) True LOC110500466
XM_036960040.1 mRNA downstream 465224 95635896 ~ 95664503 (-) True LOC110502485
XM_021580524.2 mRNA downstream 497755 95628449 ~ 95631972 (-) False parietopsin
LOC110500576 mRNA upstream 502960 96633841 ~ 96640404 (-) True LOC110500576
XM_036960096.1 mRNA upstream 516249 96647130 ~ 96897073 (-) False LOC110500541
XM_036960106.1 mRNA upstream 516249 96647130 ~ 96897073 (-) False LOC110500541
XM_036960115.1 mRNA upstream 516249 96647130 ~ 96897073 (-) False LOC110500541
XM_036960116.1 mRNA upstream 516249 96647130 ~ 96897073 (-) True LOC110500541
TU235579 other downstream 297365 95829374 ~ 95832362 (-) True G208077
TU235350 other downstream 442863 95682037 ~ 95686864 (-) False G207876
TU235346 other downstream 442863 95682623 ~ 95686864 (-) True G207876
TU235358 other downstream 519941 95604228 ~ 95609786 (-) True G207884
TU235447 other downstream 605500 95523968 ~ 95524227 (-) True G207959
TU236021 other upstream 3196 96134077 ~ 96134472 (-) True G208472
TU236221 other upstream 290985 96421866 ~ 96422224 (-) True G208658
TU237272 other upstream 1285940 97416821 ~ 97417188 (-) True G209560
TU237607 other upstream 1370291 97501172 ~ 97502394 (-) True G209802
TU237655 other upstream 1487978 97618859 ~ 97619212 (-) True G209841

Expression Profile