RNA id: TU236174


Basic Information

Item Value
RNA id TU236174
length 309
lncRNA type sense_over
GC content 0.42
exon number 1
gene id LOC110502509
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 96129727 ~ 96370206 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGACTGAAGCCTCCTGCCTCAGTACATTGCGTCTATTTTGGGGTGTATTTCATTATTTGCATTACTGTACCTGAATAAGAAACACAGATAGAGGAAAAAACCAATCCGGACAGTGTCGCCCTGTCACCGTGCGTATAATGGAGACTCGTTTTTTTATGACCGTGTGGTGAAATAATAGCCGACCTATGTAGCCGTTAATTCTATTGGCGATCTATTCTTTTTTTCAATGGATGATTGTGTCAGGGTTCTTAGTTCGTTCTGTCAATAACGCATCGGTAATAACTCATGCCATGTCCCATTACCCGAT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007165 signal transduction biological_process
GO:0046872 metal ion binding molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU236169 lncRNA downstream 4315 96364789 ~ 96365120 (-) True G208611
TU236168 lncRNA downstream 4786 96364397 ~ 96364649 (-) True G208610
TU236164 lncRNA downstream 9731 96359371 ~ 96359704 (-) True G208607
TU236163 lncRNA downstream 10307 96358519 ~ 96359128 (-) True G208606
TU236160 lncRNA downstream 13112 96356076 ~ 96356323 (-) True G208603
TU236190 lncRNA upstream 17508 96387251 ~ 96387473 (-) True G208629
TU236333 lncRNA upstream 130074 96499817 ~ 96500344 (-) True G208765
TU236338 lncRNA upstream 134649 96504392 ~ 96504628 (-) True G208769
TU236346 lncRNA upstream 144823 96514566 ~ 96514766 (-) True G208777
TU236350 lncRNA upstream 148456 96518199 ~ 96518719 (-) True G208781
XM_036960073.1 mRNA downstream 277030 96051302 ~ 96092405 (-) True LOC110502500
XR_002475062.2 mRNA downstream 485756 95882131 ~ 95883679 (-) True LOC110533932
XM_021577854.2 mRNA downstream 648320 95703359 ~ 95721115 (-) True LOC110500466
XM_036960040.1 mRNA downstream 704932 95635896 ~ 95664503 (-) True LOC110502485
XM_021580524.2 mRNA downstream 737463 95628449 ~ 95631972 (-) False parietopsin
LOC110500576 mRNA upstream 264098 96633841 ~ 96640404 (-) True LOC110500576
XM_036960096.1 mRNA upstream 277387 96647130 ~ 96897073 (-) False LOC110500541
XM_036960106.1 mRNA upstream 277387 96647130 ~ 96897073 (-) False LOC110500541
XM_036960115.1 mRNA upstream 277387 96647130 ~ 96897073 (-) False LOC110500541
XM_036960116.1 mRNA upstream 277387 96647130 ~ 96897073 (-) True LOC110500541
TU236021 other downstream 234963 96134077 ~ 96134472 (-) True G208472
TU235579 other downstream 537073 95829374 ~ 95832362 (-) True G208077
TU235350 other downstream 682571 95682037 ~ 95686864 (-) False G207876
TU235346 other downstream 682571 95682623 ~ 95686864 (-) True G207876
TU235358 other downstream 759649 95604228 ~ 95609786 (-) True G207884
TU236221 other upstream 52123 96421866 ~ 96422224 (-) True G208658
TU237272 other upstream 1047078 97416821 ~ 97417188 (-) True G209560
TU237607 other upstream 1131429 97501172 ~ 97502394 (-) True G209802
TU237655 other upstream 1249116 97618859 ~ 97619212 (-) True G209841
TU238041 other upstream 1774577 98144320 ~ 98145517 (-) True LOC118936884

Expression Profile