RNA id: XM_036960116.1


Basic Information

Item Value
RNA id XM_036960116.1
length 4025
RNA type mRNA
GC content 0.56
exon number 27
gene id LOC110500541
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 96647130 ~ 96897073 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTCGTTGCCAAGGTTTCCGTGTACGCGCTCCAAGAGCGGAGACGCGCTGCCGCTGAGATTCAGTGTCTCTGTAGCCATGGCGGCGGATCTACACCCGGAGTGGATCTCTCGTCTCCCTTCTTCATGGAGTTACGGGGTCACTCGGGACGGACGAGTCTTCTTCATCAACGAAGAAGCAAAGAGTACAACCTGGTTGCATCCAGTCAGTGGAGAGGCAGTGATAACTGGCCACAGGAAAACTCCAGATTTACCGACTGGATGGGAGGAGGGATTTTCGTTCGAGGGGGCTCGGTGCTTCATAAAccacaATGAGCGGAAGGTGACCTGCAAGCATCCTGTCTCGGGCTGTCCCTCACAAGACAACTGCATCTTTGTCGTCAACGAACAGTCTGCCCCCAAAGCGCCAGCGAATGAGAAGGAGCGTCCTCTGAGCACCATGAGTAGCGAGGCCTCCAACTACACAGGCAGCTCGGACTATGCTACGCACCAAAGTAGCCCCGCAGCCagaCCGTCAAGATCCTCAAAAAAAATTCACAACTTTGGGAAGAGATCCAACTCGATACGGAGAAACCCCAATGCCCTGGTCGTTAAGAGTAACTGGCTTTACAAACAGGACAGCACGGGGATGAAGCTATGGAAGAAGAGGTGGTTTGTGCTGTCTGATATGTGTCTGTACTACTACAGAGATGAGAAAGAGGAGGGTATTCTCGGCAGCATCCTCCTGCCTAGCTTTCGAATATCTATGCTGTCTGTCGACGACCACATCAACAGAAAATATGCCTTCAAGGCGACTCATCCCAACATGCGGACCTACTACTTCTGCACAGACGCAGCCAAAGACATGGAGTCTTGGATGAAGGTGATGACAGATGCTGCCCTGGTGCACTCTGAGCCTATCAGGAGcaggtCGCTCAAAGTGGAACAGTGCGGTCCTCAGGATGTCAGTAACCACGTTACCCAGAACCACAGACCGGTTCTAACCCGACCAGAGATCCAGAACAACGAGCGGAACAGGACCGAGGCCGACAGGGAACATCACACCATCGCCGCCATAACCACGGTAACCACTGTCACtgccgaggaggaggaggataggaagcAGCGTGATGCAGAGCGCTACGGGTTTCAGAAGGAAGGGGCAGAGAGGGACCGGCCGCTCACCAAGATCAACAGCATCAAACTAGAACCAGATCAGGCTTCTGCTGTACCTGCTGACATCACACCAGACGGGCCCTACAGAGACCCACAGGTGAACGGTGCTGGGGACCAGAGCCCAGGGGAGATGATGACCAACCCCCAGCCCCATCGGACCCCCTCTATCCAGGGCAGCATGACCCCCACCACCCCTACCCCCCAGTACCCCCATGGGGAACCTGAACCCAGGACCCTGACCAGGACCAACTCCATGCAGCAGCTGGAACAGTGGGTCCGCACACAGAGAGTACGCAACCAGGATGATGACACACACAGCATCATGTCGTACCAGACACTGCCCAGGAACATGCCCAGTCACCGAGCCCCTCCAGCCATGCCTCACTACGGGGACCCCGGCTACCGTACCTTACCCAGGAACAGCATGGCCCGGCCGGACAGTATCTGCAGCATGTCCCCCTCCATGTATGACCAGGCCATGGGCCTGGGCCTGGGGCTATCCTCTGCAGACAAGAGACGCTCCATGAGGGACGACACTATGTGGCAGCTGTATGAGTGGCAGCAGAGGCAGGCCTATACCCCCACACGgccTATGTCGTCCACTCCCAGACCCTACGGGACCCTGCCCAGCCCCAAGACCATGATCAACCTGTCTGAGCACCAGGGTCACGGTCACCACTCCATCCCCCCCTCACCCTCGCATGGGTCCCTGTCTATGTACGGGGGCTACTCGCCCCTCCACTTCTCCTACAACCCCAGCTCCAGTAGGTCTGAGGTGGCCTTCCCTGTATACCGGGGGGATGTTACCATAGACAGAAGACACAGGACACCACATCTCAACCAGTATGCCTACCCGCCTGAGAGGAGGTCCATGCCAGCAGGGATCCCTGTCCAGACCATCACTGCCCAGTCTCTGCAAGGAAAAACGATGAGCCCAGAGGACCACAGGGAACACGCCTACATGTGCAGCCCCGAGGAGGTTGACATCGATGCCAAGCTGAGCAGGTTGTGTGAACAGGACAAGGTTGTGAGGATACGTGAGGACAAGCTCCAGCAGCTACACAGAGAGAAGCACACCCTGGAGACAGCCCTGCTGTCGGCCAGTCAGGAGATAGAGATGAGTGCTGATAACCCAGCAGCCGTACACAGTGTTATCCAGCAGAGAGACGTGCTGCAAAGTGGCCTGCTCAGCACCTGTAGAGAACTGTCACGAGTCAACACTGAGTTGGAGCGGTCGTGGAGGGAGTATGAGAAGCTGGAGGGAGACGTCTCATTGGCCAAGGACAACCTGCTGGAGCAGCTAGAGGCCCTGGGGAGCCCTCAGacggAGCCTCCCAGCCATCAGCATGTCCACATCCAGAAGGAGCTGTGGAGGATCCAGGACGTGATGGAGGCCCTCAACAAGAACAAGacccagagacacacagacacacagggacactACGGCTCCACACCCATCTCCAACATACACAAGAGTGAGggTCCTGACTACAGGCTGTATAAGAGTGAACCAGAGTTGACCACCGTAGCAGAGGTGGATGAAACCAACGGAGAGGACAGATCAGAACAGTCTGACAGAGACCCAGCAAACAcaaaagGAATGTCCTACCCCGTTGGCATCGTTCCCCCCAGAACCAAATCTCCCAACATGCCAAATTCCTCCAGCATCAACTCCTACGTCACcctgaggaggggagggaggccaGACCCGCGCATGGAGCGACCTCATAGTGCTGTAGACCAGCTGTCTGGTGGGGCTGTGGAGAAGGACAGTGGCAGATCCAGAATGAGTGTAGAAGAGCAGCTGGAGAGGATCAGGAGACACCAACAGGGGGCGctaagagagaagaagaaggggcTTCACATCCTGGCAGGAAGTAGCTGCAACAGCCCGCAGGACTACACCACACACAGCCACAGTACCACATCAACACCGTCACGTAGCCCTTCGTTCACCAAGGAGAACCCCTTCCGCAGCATGCAGAACCGTCGTCAGCGCGGCGAGGGGATGAGCAGTGACATCCTGGAGTTGGAGGCGTCACTCAGAGAACAGGAAGTGGTCAGAGAGCAGGAGACGCCGGCCGAGGAGATAGCACGCCTTAAAGAGGccacacacactgaccactacAACATGGACAGAGAGctGTCAGTCCCTGAGAAGGTGTTGATTCCAGAGCGTTATGTGGAGTCAGATCCAGAGGAGTCTCTCAGTCCAGAGCAGGAGGCTGACAAACAAAAGAAAGTGGACCGCATCAAAGCCCTCATCGCCAAAAACAGtatgcagaatgttctctctcctccaggtcCAGAGAAGGAGGCTGAAGAGGAAACCACAGCTCAGGATCATGAGAAAATGATCAACATATCCTATGAACTGGCTGCTGAGGCCTCCAAACGCAGCAAGCTGGTGGCagTGCGCAGCTTGtcatcctcctcacctcctcctgaGCCCCAACcctcctcatctccacctcctaacacacagccccccccccagcTCACTGATGGCTCCCACTTCATCTGTGTCTAGTAGTGGCAGCACCTTGGCCTCAATGAAGACCTACACGTGAGAAGACCTCTTCACTAGGACATGACACACCCAGCACAAAATCCAACAAACTGGACTGACAGACTGATGGCCCGCTAGACCACGCCATGCTCTGTTCAATCTATACCTTACTACAGTATGACATCACATCCTCCTGTGCCATGATGTCAGTTCATGTTGCCACATCCCCCCCCTTTAACATCACCACCactttcccctctccccccccctacTCTCCATGTTATCACCCTTCTCCCCCCCCTACTCTCCATGTTATCACCCTTCTCCACCCCCCTACTCTCCATGTTAtcacccttctccccc

Function

GO: NA

KEGG:

id description
K23797 PLEKHA4_5_6_7; pleckstrin homology domain-containing family A member 4/5/6/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU236877 lncRNA downstream 1096 96627285 ~ 96646034 (-) True G209226
TU236923 lncRNA downstream 27899 96617498 ~ 96619231 (-) True G209267
TU236910 lncRNA downstream 49350 96597471 ~ 96597780 (-) True G209254
TU236908 lncRNA downstream 56120 96589740 ~ 96591010 (-) True G209252
TU236901 lncRNA downstream 56636 96585047 ~ 96590494 (-) True G209246
TU237045 lncRNA upstream 59580 96956653 ~ 96958015 (-) True G209373
TU237101 lncRNA upstream 188967 97086040 ~ 97086516 (-) True G209416
TU237110 lncRNA upstream 211475 97108548 ~ 97109049 (-) True G209422
TU237133 lncRNA upstream 269033 97166106 ~ 97166479 (-) True G209443
TU237165 lncRNA upstream 348404 97245477 ~ 97248595 (-) True G209474
LOC110500576 mRNA downstream 6726 96633841 ~ 96640404 (-) True LOC110500576
XM_036960080.1 mRNA downstream 276924 96130311 ~ 96370206 (-) False LOC110502509
XM_036960073.1 mRNA downstream 554725 96051302 ~ 96092405 (-) True LOC110502500
XR_002475062.2 mRNA downstream 763451 95882131 ~ 95883679 (-) True LOC110533932
XM_021577854.2 mRNA downstream 926015 95703359 ~ 95721115 (-) True LOC110500466
XM_036960120.1 mRNA upstream 122518 97019591 ~ 97077900 (-) False pik3c2g
XM_036960127.1 mRNA upstream 131113 97028186 ~ 97077900 (-) True pik3c2g
XM_036960153.1 mRNA upstream 192134 97089207 ~ 97387953 (-) False LOC110502515
XM_036934797.1 mRNA upstream 597271 97494344 ~ 97496498 (-) True LOC118937309
LOC118944190 mRNA upstream 724933 97622006 ~ 97622184 (-) False LOC118944190
TU236221 other downstream 224906 96421866 ~ 96422224 (-) True G208658
TU236021 other downstream 512658 96134077 ~ 96134472 (-) True G208472
TU235579 other downstream 814768 95829374 ~ 95832362 (-) True G208077
TU235350 other downstream 960266 95682037 ~ 95686864 (-) False G207876
TU237272 other upstream 519748 97416821 ~ 97417188 (-) True G209560
TU237607 other upstream 604099 97501172 ~ 97502394 (-) True G209802
TU237655 other upstream 721786 97618859 ~ 97619212 (-) True G209841
TU238041 other upstream 1247247 98144320 ~ 98145517 (-) True LOC118936884
TU238753 other upstream 2021375 98918448 ~ 98946069 (-) True LOC118943885

Expression Profile