RNA id: XM_036960127.1


Basic Information

Item Value
RNA id XM_036960127.1
length 3761
RNA type mRNA
GC content 0.53
exon number 28
gene id pik3c2g
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 97019591 ~ 97077900 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCGCGACCGTGAAGACGAGCTCTTTTGTCGAGGAGAGCGCGCATTCGAGCACTTTGTTTATTATCGGCGACGCCACGGCGGGGAGCTATGATTAGAATTAGCACATCCGGGGAACCGATCCAGAAACGCTTCTATAGTTTGACTTGATGATTGACACATAGTCGTCTACGGCGCATACCTTCATACCTTCGCCCTGACAGGTAGTCGACTGTGCTGTGACAATGTCGGAGGTCTGACGAGACAAGAAGACAACTTTTTCCCAGCGTGCCTCATGGAACGATACCAGGAAGACTTAGCTGGTCTGGACCCTGTCTttctagaggaggaggaatgggatCTGTACAACTCCCTCTCGGCTCTGTCCCTGCCCAGTCCCCAACCCCGCTCCCCTCTCTGGTCCCAGGGCGGAGGCAATGAGAGCTCCAATGACCCTACCACCCAGGGGGTGGGTGGAGGGGTCCCCAACCCAAATTCCTACCTGAGACCCAGGACCCAGGAGACTGAGGTCCTCCTGAGAGGAGcagccctcctgcctcctccagtaccccctcGGAGGAGAACCTCCAGTGCTGCTCTGCTGACTAATGCTCAGAAGAGGTTCTCCTGTGATCTGACTGTACCCGCTATCAGACTGAACCGCTTTAATACAGCCACATATAGTCATCTGGATACCTGGAGCATCAAACTGATAGACACTCCACAAGGAAGCACCAAACAACTGGCTTCTCTCTGCATGTTGACGTCCAAactgctGTCTAGGTACCCCCACACTGACCAGGTGTCTAACTCAGGGGTGGTGTGGGGGCGTGTGTCACCTATCCACCCTTCCTTACTGCAGGAGGCTGAGATCACCGTCAATGTGTCAACTCCCTGGGTCCTTCACCAATTACCCATTCCCACCATGTtgAACAAGACAGTCCAGACCCTGATAGATGAGATATTGCTGCTTCTGGAACAGACTAACCCAAGAGACAGTGGATACTACCTCCTGAAGTTGTGTGATTCTGAAGAGTACCTCAGGAATGAGGAGATGCTGGGTATGCACGGGAGCATCCAGGACTATCATAAGTGTTCCCTGGAAGTCCCTCTCAGATTACTACAGGTTAACACACTACAGAATCTGTTGGCAAGGGACGTTGAGGACGACAGAGCTCCGTGTCACCTGTACCAACTCCTTGGCTCTGCTTGTGTCTTCAACACATCAAGgttgAGCCTCCAGGAGAAGCTGAGTTGCTATAACAAGGAGGTTAACAAACTGATGAGGACCAAGTGTGGCAGTAATCTTAACCTGCTATTGGATGAGGTCCGTACCATCATCAACCTGCTGTGTGGGATCTCTACTGGCGAGCTGGAGGAGGCTATCGGCAAGCTACGGAGGATTAAACCTGTAGCACTGGACCATTTGGAAATGTACGAGTGTGAGACCTCGATGATGATGCTCCACCAGGCCTTGGGCAAACTGCTGCACGTTTTCTTTGACAACTTCAGCTCAGACTTCAGGGGCCAGGAGGTGTACCACAACCCTCCTGTCTGTGACGTAGACCACAGCTCTGACATCCTCCAGCTCAACGTCGCAGCGCTCTACAGGCTACAACCCAACTGGTTAAACAGTTTTAATTACTTCTCCATTTCCTGTTCGCTGACGTACGGAGGGAAAGATATCTGCGAGACGGGCGTCTCCGAGAACATCAGCACAGCCTTGTCGCTTGGCAACAAGATTCAGTGTCACCGCATGATGGTGTTCCCGAAACAGATCAAACAGCTACCTTATGAGTCCATGTTGACGATACGTCTCCAGGGGACGAAACAGGGCAAGTCTCCTGAACTGCTACGCTGGGCCGTCCTGCCTCTATACAGTAACAGGACCCTGGTGAGTGGTACTGTCCTGCTCAGCATGTCTATGCTGGTGGAGCTGTCTGAGCCTCCCTCGCCTGCCCTGTCAGACAGCCACAGACAGGCTACTGGCGTCATCCTGCAGTTGGAGTTCCCGGAGACAGCTGAGTGGAGGTATGAAAGGCCCGTCTCCCTTCCAGGGTCTGTCTTGTTCAGTCCTCCGTGTGATGAGCTACACAAGAAGATATCAGAGGTCTCCCAGAAACACTGCCTCTGCTTTTTGTCAGAAAATGAGAGGGCGTTACTGTGGAGTAAGAGATACTGCTGTGATGGGAGGACCACCTTCCTGCACCTGCTGCTGGGTGGCGCCCCCCAGTGGGCTCCAGAGAACCTGACTGAGATCTACACCATACTGGATCACTGGACAATACTCCACCCTGAGGAAGCACTGTTTCTACTCTCTAAcaaTTTCCATGACCAGACGGTGCGTCAAAGAGCTGTGCAGCACTTTGGGCAGACTTCTGATAGAGAACTAGAGGAATATCTACCTCAACTGGTACAGGCTCTGAAGAGTGAGTGGGAGTTGAATGGACCTCTGGTGATGCTGCTGTTGGACAGGTCACTGAAGAGTGTTAGGATAGCCCAGCAGCTCTACTGGCTGTTGGTAGATGCCCAGGATGACCCCCATTACCAGAGCTGGTTCAGTAAGGTGCAGGCTGCCCTGAGACACTGCTGTGGTAAAGCACTGAGGCAGGAGCTGGAACACGAAACCCGCCTGGTAACCCTGCTCACGCAGGTGGCTGACAGGGTCCGTAGAGCTGACAAAAACCGCAGGAAGGATGTGTTGAAGAAAGACAAGTGGAAGATTGACAGCTTCTTCAAGAACGGGATCAGCTGTCGTCTACCGTTGGACCCTGCTGTACTTGTGAAGGGAGTTCATTTGGAGGCCTGTAAATTCTATAACTCCCACGCTGCTCCTCTGGGAATCTCCTTCATCAACACAGATCCTCTGGGCAGGAAAATCTCTGTCATCTGCAagACAGGGGGTAACCTGCGGCAGGACATGTTGGTGCTGCAGATCGTGCGTGTGATGGACAAGGTttggctgcaggagggactggacaTGAGGATGGTTACCTATAGGTGTATCTCTACTGGGCGAGACCAGGgtctggtgGAGGTGGTGCCAGAGGCAGTGACCCTGGGTAAGATCCAGCAGGAGTGGGGTCTGGGTGGGGCGCTGAGAGAGGACACCCTGGAGAAGTGGTTCCACATGTGGAACAAGACTGAGGAGGATTATGAGGAGGCTGTGATGAATTTCCTCCACTCCTGTGCTGGCTGGTGTGTAGCGACCTTCATCCTGGGTATCTGTGACCGCCACAACGACAACATCATGTTGAAACACAGCGGTCACATGTTCCACATCGACTTCGGCAAGATTATGGGCAATGCACAGAAGTTCGCCAGCATCAAAAGGGACCGGACTCCATTCATCTTCACCTCAGAGATGCAACACTTCATCACCGGCGGGGGTCAGAAACCCCAGAGGTTTCATCGCTTCGTAGAGCTCTGCTGTGAAGCCTACAACAGCATCCGACGACGCACCGCCCTGGTGCTCAGCCTACTGCAGCTGGAAGATCAAGGAGAGCATGGGCAGTTTCCCGGTCAAGCTCAACTTTCTGATCCACACCATGGTCCAGTCCTCTGGGAAGAAGCTGGCGCCACCCAGCCCTTCTCAGAACACCTCCCCCAACACCAACATCCAGGAAGCTGTCATACAGAAGTACACCGTGAAGGGCAAGGATGTGACGTACGAGTTGAGGGTGACCATTGAAGACGGCTATCTGATCAGCGAGAAGACGTTCGGTCAGTTTGAGCTGATCCACAAAGAGCTGAAGAAGCACTTCATAGAGTCTACGCTTCCACA

Function

GO:

id name namespace
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0048015 phosphatidylinositol-mediated signaling biological_process
GO:0005524 ATP binding molecular_function
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0035091 phosphatidylinositol binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237045 lncRNA downstream 70171 96956653 ~ 96958015 (-) True G209373
TU236874 lncRNA downstream 149318 96877538 ~ 96878868 (-) True G209223
TU237017 lncRNA downstream 180861 96846734 ~ 96847325 (-) True G209349
TU237016 lncRNA downstream 181594 96845751 ~ 96846592 (-) True G209348
TU237013 lncRNA downstream 187980 96839145 ~ 96840206 (-) True G209346
TU237101 lncRNA upstream 8140 97086040 ~ 97086516 (-) True G209416
TU237110 lncRNA upstream 30648 97108548 ~ 97109049 (-) True G209422
TU237133 lncRNA upstream 88206 97166106 ~ 97166479 (-) True G209443
TU237165 lncRNA upstream 167577 97245477 ~ 97248595 (-) True G209474
TU237173 lncRNA upstream 183794 97261694 ~ 97265605 (-) True G209478
XM_036960096.1 mRNA downstream 131113 96647130 ~ 96897073 (-) False LOC110500541
XM_036960106.1 mRNA downstream 131113 96647130 ~ 96897073 (-) False LOC110500541
XM_036960115.1 mRNA downstream 131113 96647130 ~ 96897073 (-) False LOC110500541
XM_036960116.1 mRNA downstream 131113 96647130 ~ 96897073 (-) True LOC110500541
LOC110500576 mRNA downstream 387782 96633841 ~ 96640404 (-) True LOC110500576
XM_036960153.1 mRNA upstream 11307 97089207 ~ 97387953 (-) False LOC110502515
XM_036934797.1 mRNA upstream 416444 97494344 ~ 97496498 (-) True LOC118937309
LOC118944190 mRNA upstream 544106 97622006 ~ 97622184 (-) False LOC118944190
LOC118944213 mRNA upstream 547881 97625781 ~ 97625897 (-) True LOC118944213
XR_005039512.1 mRNA upstream 569961 97647861 ~ 97648048 (-) True LOC118944196
TU236221 other downstream 605962 96421866 ~ 96422224 (-) True G208658
TU236021 other downstream 893714 96134077 ~ 96134472 (-) True G208472
TU235579 other downstream 1195824 95829374 ~ 95832362 (-) True G208077
TU235350 other downstream 1341322 95682037 ~ 95686864 (-) False G207876
TU237272 other upstream 338921 97416821 ~ 97417188 (-) True G209560
TU237607 other upstream 423272 97501172 ~ 97502394 (-) True G209802
TU237655 other upstream 540959 97618859 ~ 97619212 (-) True G209841
TU238041 other upstream 1066420 98144320 ~ 98145517 (-) True LOC118936884
TU238753 other upstream 1840548 98918448 ~ 98946069 (-) True LOC118943885

Expression Profile