RNA id: TU237308



Basic Information


Item Value
RNA id TU237308
length 1012
lncRNA type sense_over
GC content 0.42
exon number 2
gene id LOC110533938
representative False

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 97605148 ~ 97606655 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCAAGGCTGGAGACTTTCTTTAGCAGagatggctgacaaaaatacCAGGttggaagcaaatggactcctgaaacAACCAGCTACccaggctgtcgtcttgtgaaacagtggatgtaaagaatctagctagctaaagcgtTTCCTGCCAATTTAATGGACAATTTTGTAAGCTCGCCTTGCTGATATTTGCCATGCAGCTGAAGTAACGCGGCTAGCTAACTACTTTCTTGCTTATTGTGCAGCGGAGGATAACAAtacctgtatgcctatggatgtgtagctagctatctacctGATCTGTGCATGGACCCaaacgtttggtatacatattagttcagaacctagctaTGAACCTGGGCTATCCTAGCAAGTTGTGTCAACTTcaaaacagtctgaatgacattaatgaagcctatggattgagtagaatataatataactttGTGCCATGCATACAAGTCATATATACATGCagttattaccatgcatgagatccccacattgtagcctgtacatttaatatattcactgatcatgtactctaccttggcaaataaaggtgtggTTCGGGTATGAATGTCTGTGAGattctttttcagtcatatccaataccaggagtatcaaattccagtctttgtatgatgctgtgtctgcatgtatgtattacaattatacccttcaacagtttttaccaatcctggtcctgggacacattgtaactatgcaatagactagaaacatgatttaactaattaaaggctgatttgtaatttgtatatacataaatataattttaaaaacagTACACTGTAGCAGTACACTGCATACAGGTATTGTTACTTCCTATGCATCATGTAAATACTCTAAAACTGGTTGATCTCGATATCTAATTTCCTTCACCTGCATTGATCTGATAATGTCACGACATCCACCAaagttgttccctctccttgttcgggcggcgttcggttcCCATCTCataattatgttccttatttaaccctctggtttc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU237313 lncRNA upstream 6099 97490157 ~ 97599263 (+) False G209590
TU237314 lncRNA upstream 6099 97525269 ~ 97599263 (+) True G209590
TU237395 lncRNA upstream 13107 97591424 ~ 97592255 (+) True G209644
TU237357 lncRNA upstream 39097 97564117 ~ 97566265 (+) False G209619
TU237359 lncRNA upstream 40051 97562329 ~ 97565311 (+) False G209619
TU237324 lncRNA downstream 12325 97618858 ~ 97619089 (+) True G209591
TU237399 lncRNA downstream 13259 97619792 ~ 97646116 (+) False G209648
TU237400 lncRNA downstream 13259 97619792 ~ 97681203 (+) True G209648
TU237411 lncRNA downstream 31175 97637708 ~ 97673263 (+) False G209651
TU237412 lncRNA downstream 31591 97638124 ~ 97674173 (+) True G209652
XM_036960160.1 mRNA upstream 9039 97528707 ~ 97596323 (+) False LOC110500611
XM_036960163.1 mRNA upstream 9039 97528707 ~ 97596323 (+) False LOC110500611
XM_036960168.1 mRNA upstream 9039 97528707 ~ 97596323 (+) False LOC110500611
XM_036960170.1 mRNA upstream 9039 97528707 ~ 97596323 (+) False LOC110500611
XM_036960175.1 mRNA upstream 9042 97528714 ~ 97596320 (+) True LOC110500611
LOC118944222 mRNA downstream 14024 97620557 ~ 97620665 (+) True LOC118944222
LOC118944205 mRNA downstream 21744 97628277 ~ 97628490 (+) True LOC118944205
XM_036960296.1 mRNA downstream 27108 97633641 ~ 97676623 (+) False LOC110512361
XM_036960315.1 mRNA downstream 27119 97633652 ~ 97640022 (+) False LOC110512361
XM_036960310.1 mRNA downstream 27119 97633652 ~ 97640024 (+) False LOC110512361
TU237298 other upstream 118590 97486476 ~ 97486772 (+) True G209586
TU236415 other upstream 991903 96612429 ~ 96613459 (+) True G208836
TU235944 other upstream 1376899 96227793 ~ 96228463 (+) True G208404
TU234200 other upstream 2899114 94705946 ~ 94706248 (+) True G206926
TU234180 other upstream 2973095 94631829 ~ 94632267 (+) True G206908
TU237326 other downstream 12084 97618617 ~ 97619089 (+) False G209591
TU237386 other downstream 91578 97698111 ~ 97699776 (+) True LOC110500822
TU237387 other downstream 133528 97740061 ~ 97772765 (+) True G209636
TU237549 other downstream 350711 97957244 ~ 97957836 (+) False G209759
TU238408 other downstream 1090635 98697168 ~ 98700392 (+) True G210408

Expression Profile