RNA id: LOC118944205


Basic Information

Item Value
RNA id LOC118944205
length 214
RNA type mRNA
GC content 0.43
exon number 1
gene id LOC118944205
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 97628277 ~ 97628490 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCGTCTACAAGCATTTTTCTTGGAACAAGGTTGTCGAGTTTTTAGAACAGAGTCCATAAGACACAGAGCTGTTGCAAAACAGTAAATGGATTTTCAAAATGTAGACCATATATTAAAGGGATTTTTGGAATAGGGAGATGGAataggggcttgctccgtccactCCACACATCGAcctggtattgcagtacctccaggAACGGTGCACCCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237324 lncRNA upstream 9188 97618858 ~ 97619089 (+) True G209591
TU237308 lncRNA upstream 21744 97605362 ~ 97606533 (+) False LOC110533938
TU237310 lncRNA upstream 21963 97605362 ~ 97606314 (+) True LOC110533938
TU237306 lncRNA upstream 22037 97605362 ~ 97606240 (+) False LOC110533938
TU237305 lncRNA upstream 22131 97605362 ~ 97606146 (+) False LOC110533938
TU237411 lncRNA downstream 9218 97637708 ~ 97673263 (+) False G209651
TU237412 lncRNA downstream 9634 97638124 ~ 97674173 (+) True G209652
TU237376 lncRNA downstream 12287 97640777 ~ 97641375 (+) True G209627
TU237413 lncRNA downstream 13560 97642050 ~ 97642311 (+) True G209653
TU237416 lncRNA downstream 15717 97644207 ~ 97680150 (+) True G209656
LOC118944222 mRNA upstream 7612 97620557 ~ 97620665 (+) True LOC118944222
XR_002475063.2 mRNA upstream 21622 97605148 ~ 97606655 (+) False LOC110533938
XM_036960163.1 mRNA upstream 31954 97528707 ~ 97596323 (+) False LOC110500611
XM_036960296.1 mRNA downstream 5151 97633641 ~ 97676623 (+) False LOC110512361
XM_036960315.1 mRNA downstream 5162 97633652 ~ 97640022 (+) False LOC110512361
XM_036960310.1 mRNA downstream 5162 97633652 ~ 97640024 (+) False LOC110512361
XM_036960305.1 mRNA downstream 5163 97633653 ~ 97640595 (+) False LOC110512361
XM_036960309.1 mRNA downstream 5163 97633653 ~ 97640595 (+) False LOC110512361
TU237326 other upstream 9188 97618617 ~ 97619089 (+) False G209591
TU237298 other upstream 141505 97486476 ~ 97486772 (+) True G209586
TU236415 other upstream 1014818 96612429 ~ 96613459 (+) True G208836
TU235944 other upstream 1399814 96227793 ~ 96228463 (+) True G208404
TU234200 other upstream 2922029 94705946 ~ 94706248 (+) True G206926
TU237386 other downstream 69621 97698111 ~ 97699776 (+) True LOC110500822
TU237387 other downstream 111571 97740061 ~ 97772765 (+) True G209636
TU237549 other downstream 328754 97957244 ~ 97957836 (+) False G209759
TU238408 other downstream 1068678 98697168 ~ 98700392 (+) True G210408
TU238278 other downstream 1269034 98897524 ~ 98899538 (+) True LOC110510476

Expression Profile