RNA id: XM_036960296.1


Basic Information

Item Value
RNA id XM_036960296.1
length 2788
RNA type mRNA
GC content 0.48
exon number 8
gene id LOC110512361
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 97633641 ~ 97676623 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATAATTGAAAGGTTAGAGTAGACCTATGTTCAGAGATTAACTTCCACAATCTATGTTAAAATGGTGAGAGGCCAGTATGATTTTAACCCCTTGGGTACCTTACAATCACAGCCATCCTGAAACTGCCGGGTAGGGCAACAGGAGTTATGGAGTGGTTCGCCCACCGGTCCATACTACTGCCCCGAATGCAAGGAGGAGTACAAGACATTACCGGTGGGGTTCAAGAGAGACACTACCGCAAGTCCGTGGCGACATGAAGCGCCTGCACATACACGCACCAGCTCAGCCACAGAAGGCAGAGCCAATGAAGAGGATGTCATTGAGATAAATTCGGCGGGCTGGACCCTTGGGAAGAGAGCCTCCATCTCTCAATCCAAGCGTCTGTTAGGGAAGAGACCAGCCAGTTCTTCTGTCCCAGGAGGCCATTTTCACGACAACAAGAGACAAGCCACTGgcagctcctcttcctcccactccAGGGGAAGGTCTGGTGACCGTAAGAGACCCgccacttcctcttcctcctcttcagccaATCAGAACACGTCGTCTGACGTCATTCTCCTTAGCAACCAAACCGCCTAGTACTGCGTCCGTCGCCGTCAGAGGTCCGGACCTGACACGTGATAGGTCTAGGTCCCCTAGGAGAGACCCACCCATTGAGCTGGATGAACCCCCTGCTGCAACAGAACCTCTTACAAGAGAACCACTGAATGACCCTAGAAAATCACCTGAAGCAGCAGCAGGTCACATGACCAACACATCGCCAAGAAGAATCACCACCGTTGAGCTGGACCCACCTCCACCCCCTGCAAGAGATCCGTACACACCCGCCAAGAATCCTGCTGAAACGACCATAACAACCCATTTACGTTTAGTCACCCCTACGAAGGAGAAGCCTGTTGAAGCTGAGCGGGAGCCTCTTCCAGAGATCTCCAACAGATCTGGTCCAATCGGCACCTCCACCTCTCCTACCCGTGCTGCCAACAACCTGTCCCCTGGACGTACCAACCTGTCCCCCAGCCTGGCTCGTCAAACCTCTAGGGAGACCTTCCTACCCTGCCACTATTGCCCCAGCCAGGGCTCTCTCCCTGCGGTgaagacctgcctggtgtgtggaGCCTCCATGTGCTCCGACCACCTCCGGCCTCACCTGGAGTCCCCTGTCTTCCAGAGCCACACCCTGGTACCCCCTGTGGAGGACACCTCACCCTGGAGGTGCCCGGAACACCAGGAGATGAACCGAATCTACTGccgtcagtgtagtgtgtgtgtctgtaccgtGTGTACCGTGATCGGGTCGCACCGGGACCACGCTTGCGTCAGCATCAGAGAGGCCGAGAGGGAGCTGAGGGGGAACCTGAAACAGGAGATGAAGAAGATGCAGGGAGCGGAACAGTCTTTAATCAGCAGAGTGACTGAGATGACAGAGAAGAAACAGAGATTCCAGGTGTCGTCAACAACGTAAAAGGAATTGATGCCATAAGCCCGTCTTCTAAAGATGAGTTCACAGAGTTTGAAAAGTTGTTAAGACAAGAAATCACCTTTTGAGACTTCAATACACTATTCCGGCTTCCTAGAGTCCTTGTTTCGAGACCTCTGTCTCTCATTAGAGGTAGAGGACTTGAAGAAAGTCAGCAACTCCCTCACAGTCTTACTAAGTGAAAAACAGAAACAAGAAAAGCAGCTGAATAAagggaagaagaaaaagaaaggtGTGGTTGCTGCCGGAGGGATGAAGTCCAAGATGAAGGATGACCTATCGGACTACGGAGAGTTCGATGGAGGTTACGCACAAGACTACGAGGACTTCATGTGACGTGACACCAACCCGATTTCTGTCTCAAacgacaccctgttccctatgtagaaccctttatataggggatagggtggcaTTTAGTAGGGTTCCAATGTCTGTCCCCATTCCCCCTCCGCTCTGCTCCACCAAGCCCCCTCAGGGCATGACCTATGACCTATTCTACTGCCCAGAGCCATCCAATGATAACCACCCTTATGTCGCCCGCCGCCAGCCGCACACAAACTCGATTCTGAAAAGAAGTGTTGAATGGTTTGACGAGGAACGTCTGATTTCAGCAGGGTTGTTTCTCCTCGTTAGAAATTCCTTCAACGATTCCTCGAAACTGACTGACCAATAAGACTGTGTTCTGGATACCAAAATGTTTCACCTCCCATAATGAGATGCGAAAACCCAGCATCaaacttgttttttttcccaATCCTAGAATGAATTTAATTAGATCTTTTAAAATAAATGATCTGTCAAACAAAATTTAATTGTTACTGTTTGACgaaggaaaatacattttgtattttaCATTTTGCATTTCAATAAATAGCCGTAGGGTCAAGTAGTAAACACGGCGCTGACCATTTCATCCTGGGCCTATGTTCACAAAACGTCTGAGTAGATacgctgatctagaatcagatgGCCCCCCCccttcttattcattatgatcagaAAAagactaaactgatcctagagcaGCACTGCTACACTGAGAAACCCAGTATAATCGCTTCCACTGAGTTGAAGCAACAATCACTCTAGGTCTCCTTGGCATAACTTTGCACGGCTTGTATCAAGTGAGGTGAGAAACAGACCAAATGTATTTAGGAAAGAAGGTTGTACTGGGTTATTATCACTTGTTTTTCTTTTTCACAGCACATTTTCAGGATTGGTAATGGAAATATAAACAATATTAAAGATTAAAGTTGTCTTATTTTATCCACCTAATTTAATAAAATCACtgttttaagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237324 lncRNA upstream 14552 97618858 ~ 97619089 (+) True G209591
TU237308 lncRNA upstream 27108 97605362 ~ 97606533 (+) False LOC110533938
TU237310 lncRNA upstream 27327 97605362 ~ 97606314 (+) True LOC110533938
TU237306 lncRNA upstream 27401 97605362 ~ 97606240 (+) False LOC110533938
TU237305 lncRNA upstream 27495 97605362 ~ 97606146 (+) False LOC110533938
TU237428 lncRNA downstream 23190 97699813 ~ 97700168 (+) True G209665
TU237429 lncRNA downstream 26197 97702820 ~ 97706607 (+) True G209666
TU237379 lncRNA downstream 32761 97709384 ~ 97745608 (+) False G209629
TU237432 lncRNA downstream 38485 97715108 ~ 97753268 (+) True G209667
TU237435 lncRNA downstream 40177 97716800 ~ 97755407 (+) True G209668
LOC118944205 mRNA upstream 5151 97628277 ~ 97628490 (+) True LOC118944205
LOC118944222 mRNA upstream 12976 97620557 ~ 97620665 (+) True LOC118944222
XR_002475063.2 mRNA upstream 26986 97605148 ~ 97606655 (+) False LOC110533938
XM_036960168.1 mRNA upstream 37318 97528707 ~ 97596323 (+) False LOC110500611
LOC118944223 mRNA downstream 4867 97681490 ~ 97681598 (+) True LOC118944223
LOC118944201 mRNA downstream 14165 97690788 ~ 97691001 (+) True LOC118944201
XM_036960262.1 mRNA downstream 19316 97695939 ~ 97711108 (+) False LOC110500822
LOC118944224 mRNA downstream 39662 97716285 ~ 97716393 (+) True LOC118944224
LOC118944202 mRNA downstream 45632 97722255 ~ 97722468 (+) True LOC118944202
TU237326 other upstream 14552 97618617 ~ 97619089 (+) False G209591
TU237298 other upstream 146869 97486476 ~ 97486772 (+) True G209586
TU236415 other upstream 1020182 96612429 ~ 96613459 (+) True G208836
TU235944 other upstream 1405178 96227793 ~ 96228463 (+) True G208404
TU234200 other upstream 2927393 94705946 ~ 94706248 (+) True G206926
TU237386 other downstream 21488 97698111 ~ 97699776 (+) True LOC110500822
TU237387 other downstream 63438 97740061 ~ 97772765 (+) True G209636
TU237549 other downstream 280621 97957244 ~ 97957836 (+) False G209759
TU238408 other downstream 1020545 98697168 ~ 98700392 (+) True G210408
TU238278 other downstream 1220901 98897524 ~ 98899538 (+) True LOC110510476

Expression Profile