RNA id: XM_036960269.1


Basic Information

Item Value
RNA id XM_036960269.1
length 3363
RNA type mRNA
GC content 0.50
exon number 2
gene id LOC118943865
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 97626323 ~ 97690421 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttcgcctggtcagacagctgatgtgttgtgcactgaagtccacaagtgaaggttaaaggtgagaggaggagagcacgtaGGTGCCAGAAGGAATTATCCCACGATCAAAGGGATCGTGCTGTTTTGAAAATGatctgtgtttgcgtgtgatcaggggtgtattcattccgttgattctgttgaaaaacgtttcttaaagcGAAAGCAAACGGAAccaaacggggataaacatacctgaatttgtccaatggaaactctcatttgcaaatgttggactaatgattacactctagatcagctagatgaaGGCAAGATTGaacaaggcggtattgaatgtgtcaataaTGTCTGTCATCTTGATTACTCAAAAGTCTCTCAACCTGTGttcacctacgttgtaaactttcattcataggctaggttgtagcaacctcatgatgggtacaaggacagtatcatgtagtagcctaaacctaacTTTCAGTATGAATCAAACCAGTGTAGTTTTTATTCATCAATATAAAGTATTTTCTGCATAATGGCAATTAAAGTGCATGATATGAAGTTTGCTGTAGTGACCGACTAAGCTTAATTGTAAAAGTATGCCTCAACAGAGCCATGTTTGCAAAAGTGTATTATGCGAAGCACACATTTAGTTAGGCAGCCAGGACCGTAGGACGCATTGTCGGTCTAGCTCTCACTGCAGTCCAGTGCCATGGACATCTTTGAAGTTTGGCCTCTAGTAATTCAGGTGGGCAACTTTATAAAGGCCTCCTCACAATGACCTTATCATGCAAGGCTCTACAGACAGATAAAAAAATACACAGGCTATTTTTGCGTTGATGGTGTATGTATTGAAGTCAACTGGGGCGGCAAATAGCCTagtaagagcattgggccagtaactgagaggttgctggatcaaatccctgagctgacaaggtacaaatctattgttctgccccctgaacaaggcagttaatccactgttcctaggccatcattgaaaataagaatttgttctgaattgacttgcctagttaaatatatttttcaagtGGTTCAACATTCAAATGCGTTTTGATTGACCACATAGGAGAGGCGACGGTCGGTGGAAGTCTGGCGCCACCAAGTGGACAATTATTTTAGTTCCCTTGTGGCATCAACGCTTCCTGAGATATTATATAAAAGATAACATGTTATGTCAGTATTAATTATTTCTCCAACCCCTATTTGCTAGATTATTATTCCAATTTAGCTGTAAATCTGGTTTGAACTCAATAAGGATTTGTCTCGTTTCAGATTGGAGGGCGGATGTCCACGTCACTTTGGAACCTACCAATGTGTTACATTGTAACAGTGAAAAGTGTATTTTCCCGACGTTGATCAAATCCCAGTCTATgccaccattttttttaaatagcatcATCTTTGATATTTGTTGTAAAGTGTACAGAGCTCATTTAGGTGTAACCTTTACCGGATTTAACGTGTCTGAGAACGGCACCTTCCTCCCGAAAGCATTGCggtatcgcttctcggccttttggctaagatcaagagCAAGATCGACTGTATTTCTCGCGGGATCCTCAAAGTGGTGCGATGTCGTCATCGGCCACGTCACAGTCAGCGGCTGCTGGACTGAAGAATACGCTTCGTTTTAATTGGACAGGAAAGGAAAATTTGATGGAGAGAGTTCGTTTTGGAAAAGAAGTGCTGTTTGGACCTCTACGCCTGACAGCAGACGATGTGCACTGCCTGCAACAGAACACACCCGAGAAGTTCTACGATGTGTCGTTCTACACCATCACCCGGCTGGAGGAAGTAAAGGGGCTCTTCCGTGCGAACGCGACAGCACCCGCCCTCGTGGATTTTAAAGTTGAGTCCATGTGCAGGCACAATATGAGGGTGCTAACGGTGCATATGTTCAACCCCTGGGTCACTGAAGAAACGTTAGTGTGCTATCTCAGCCGGTATGTGACCATCTTGCCAGGAGTGAGAGACATTAAGGACGCCCTAGGCATCTGGACAGGGAAGAGGCAGTTTCGTGTGCTGTTAAAGGAAGACGAGAGCGGCCATGATGGATACCGCCATCCTCCTGCTTCGTTTTCCATCGGTGCTGACAGGGGCTACCTCATGTATGCTGGACAGCCTCGTTTCTGCAGGAAGTGTAGCACGTACGGGCACCTCGCGGATGCCTGCACACAGACAAGGTGCAGAAACTGTGGAATTATTGGACATACAATGAGGGATTGCACCGTGCCAAAGCGCTGCAGTCTGTGTAACTCAGAGGACCACCTGTTCCGTCACTGCCCGAAGGCAGTCCCCTCTTACGCCAGAGCGGTGAGCGGGAAAAGAGCTGAAGGCGGGAAAAGACCAGATGAGGGAGAAGGCATGGAACTACGCGCCATTGAGGAGGTTGTGGATGagatagtgatggagagagaacTGCGAGAGTCAGAGGAGAGCGGGAGTGAGACGCCATCATCATCTcacgaggagagaggagaagcggACAGAAGTTGGAATAAGcaagtggaggaggagaagggagagccCACTGCGCCCGCGGCTACCGAGAGCTGGACaacggtgagagagaggagaaagtgcgCGGTGAAAAGGAAGCAGATGAGCCCTGTTTCCCCACTCATCCGCATGGAGGCGACGGAGAAGTCCGCTTTGGGGGGGAATCGCTTCAGTTGTTTCGAAAGCGGGAAGTCTGAGGAGAAAAGCGAGGGAAACCTGGGCAGCGCAGAGGAGTCTCTGCTATCCCCATCAGGCGCGGCCTCCATCGTGAGCAGCGGTCTGGCACCCAGTGGGGTTCCAGCACCCACGCAGATGGAGGGGGAGCATGAGGAGGAGGACAGTGTTTTCCCGACCCCTATCTTGGTGGACAGTCCTCCGACTGGAGACCATCGTTTCCCAGACCGGCCGCCAAATGAGTTAATGTACTTAAAGATCGGGAACCAGTGTGTCCAGTGCGCGGGCTCGCTATAGGTGAGCCCACAACGGTTTGGCGCAACGTGGCCCATCCTGCTCTCCTGAATCGGCATCGGGACCTGTCCTGGATGGTCGCCCACGAGATCCTCCCGGTCAGGGCCGTTATGCACTCACGGGGCATGGCGAGGACATCCGCGTGCCCCCGACCAGGCTGCGGCCAAGAAGAGTCGGTGAGGCACATGCTCTGGGAGTGCAGAGCCGCCAGGGACCTGTGGAAGGAAGCAGGCCCCCTGATCACCTCGTGTCTGCCAGCAGGGGAGGACCTAACACCTCAGCTCGTGCTGTATGGGGTGGGCCGAAGGCCCATTCCATCGAAGGCCTTCACCAAGCTCTGGCCCACCCTCACGTGCCTGAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237681 lncRNA downstream 5932 97619795 ~ 97646274 (-) True G209866
TU237645 lncRNA downstream 12597 97621775 ~ 97639609 (-) False LOC118944190
TU237673 lncRNA downstream 34182 97617666 ~ 97618024 (-) True G209858
TU237711 lncRNA downstream 40103 97609516 ~ 97612103 (-) True G209875
TU237730 lncRNA downstream 47829 97604157 ~ 97604377 (-) True G209883
TU237648 lncRNA upstream 9473 97699305 ~ 97723186 (-) False LOC118943868
TU237660 lncRNA upstream 19972 97709804 ~ 97746811 (-) True G209845
TU237744 lncRNA upstream 24359 97714191 ~ 97750984 (-) True G209893
TU237651 lncRNA upstream 26116 97715948 ~ 97723186 (-) False LOC118943868
TU237649 lncRNA upstream 32588 97722420 ~ 97723186 (-) True LOC118943868
XR_005039512.1 mRNA downstream 4158 97647861 ~ 97648048 (-) True LOC118944196
LOC118944213 mRNA downstream 26309 97625781 ~ 97625897 (-) True LOC118944213
LOC118944190 mRNA downstream 30022 97622006 ~ 97622184 (-) False LOC118944190
XM_036934797.1 mRNA downstream 155708 97494344 ~ 97496498 (-) True LOC118937309
XM_036960153.1 mRNA downstream 264253 97089207 ~ 97387953 (-) False LOC110502515
XR_005039177.1 mRNA upstream 693 97690525 ~ 97691443 (-) False LOC118943869
LOC118944207 mRNA upstream 27908 97717740 ~ 97717837 (-) True LOC118944207
LOC118944209 mRNA upstream 29842 97719674 ~ 97719773 (-) True LOC118944209
XR_005039176.1 mRNA upstream 32160 97721992 ~ 97723183 (-) False LOC118943868
LOC118944208 mRNA upstream 65798 97755630 ~ 97755727 (-) True LOC118944208
TU237655 other downstream 32994 97618859 ~ 97619212 (-) True G209841
TU237607 other downstream 149812 97501172 ~ 97502394 (-) True G209802
TU237272 other downstream 235018 97416821 ~ 97417188 (-) True G209560
TU236221 other downstream 1229982 96421866 ~ 96422224 (-) True G208658
TU236021 other downstream 1517734 96134077 ~ 96134472 (-) True G208472
TU238041 other upstream 454488 98144320 ~ 98145517 (-) True LOC118936884
TU238753 other upstream 1228616 98918448 ~ 98946069 (-) True LOC118943885
TU238756 other upstream 1252642 98942474 ~ 98943797 (-) True LOC118943882
TU238870 other upstream 1335900 99025732 ~ 99026118 (-) True G210765
TU239331 other upstream 1433401 99123233 ~ 99123658 (-) True G211127

Expression Profile