RNA id: XR_005039177.1



Basic Information


Item Value
RNA id XR_005039177.1
length 527
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC118943869
representative False

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 97636136 ~ 97691714 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tttctatctaactgggagtctccttagtgaaaacatccgaagctcatcaaagGGGGTGCACCGTTcctggaggtactgcaataccaggtcgatgcgtggagtggacggagcaagcccctatTCCATCTCCCTATTCCAAAAATCCCTTTAATATACGGTCTACATTTTGAAAATCCATTTACTGTTTTGCAACAGCTCTGTGTCTTATGGACTCTGTTCTAAAAACTCGACAACCTTGTTCCAAGAAAAATGCTTGTAGACGATTGAGAAACTGTAATAGGTTGTTTCCGGATTTAAATAGTACAAGATTACAGTACCATGAGGGACAAAAATGCtgacagcacctggtattcccaggcagtctcccatccaaggactAACCAGGCCTGACCTTGCTTAGCTTCCGAGACCGGgcgtattgtattgtaatgtgtatatgatgCACGTAAAcacttcactgtaccgtttacaccctgtatcctgtgcatgtgacgaATAAACGTTGATGTGATGATCAACTCACCATT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU237679 lncRNA downstream 104 97626323 ~ 97690421 (-) True LOC118943865
TU237675 lncRNA downstream 1420 97652692 ~ 97689105 (-) True G209860
TU237642 lncRNA downstream 6769 97647549 ~ 97683756 (-) False G209834
TU237643 lncRNA downstream 6769 97655156 ~ 97683756 (-) True G209834
TU237737 lncRNA downstream 8447 97646404 ~ 97682078 (-) True G209888
TU237648 lncRNA upstream 7862 97699305 ~ 97723186 (-) False LOC118943868
TU237660 lncRNA upstream 18361 97709804 ~ 97746811 (-) True G209845
TU237744 lncRNA upstream 22748 97714191 ~ 97750984 (-) True G209893
TU237651 lncRNA upstream 24505 97715948 ~ 97723186 (-) False LOC118943868
TU237649 lncRNA upstream 30977 97722420 ~ 97723186 (-) True LOC118943868
XM_036960269.1 mRNA downstream 693 97652206 ~ 97689832 (-) False LOC118943865
LOC118944194 mRNA downstream 7407 97682938 ~ 97683118 (-) True LOC118944194
XM_036960208.1 mRNA downstream 30061 97655151 ~ 97660464 (-) True LOC118943862
XR_005039512.1 mRNA downstream 42477 97647861 ~ 97648048 (-) True LOC118944196
LOC118944213 mRNA downstream 64628 97625781 ~ 97625897 (-) True LOC118944213
LOC118944207 mRNA upstream 26297 97717740 ~ 97717837 (-) True LOC118944207
LOC118944209 mRNA upstream 28231 97719674 ~ 97719773 (-) True LOC118944209
XR_005039176.1 mRNA upstream 30549 97721992 ~ 97723183 (-) False LOC118943868
LOC118944208 mRNA upstream 64187 97755630 ~ 97755727 (-) True LOC118944208
LOC118944211 mRNA upstream 66121 97757564 ~ 97757663 (-) True LOC118944211
TU237655 other downstream 71313 97618859 ~ 97619212 (-) True G209841
TU237607 other downstream 188131 97501172 ~ 97502394 (-) True G209802
TU237272 other downstream 273337 97416821 ~ 97417188 (-) True G209560
TU236221 other downstream 1268301 96421866 ~ 96422224 (-) True G208658
TU236021 other downstream 1556053 96134077 ~ 96134472 (-) True G208472
TU238041 other upstream 452877 98144320 ~ 98145517 (-) True LOC118936884
TU238753 other upstream 1227005 98918448 ~ 98946069 (-) True LOC118943885
TU238756 other upstream 1251031 98942474 ~ 98943797 (-) True LOC118943882
TU238870 other upstream 1334289 99025732 ~ 99026118 (-) True G210765
TU239331 other upstream 1431790 99123233 ~ 99123658 (-) True G211127

Expression Profile