RNA id: LOC118944201


Basic Information

Item Value
RNA id LOC118944201
length 214
RNA type mRNA
GC content 0.44
exon number 1
gene id LOC118944201
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 97690788 ~ 97691001 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCGTCTACAAGCATTTTTCTTGGAACAAGGTTGTCGAGTTTTTAGAACAGAGTCCATAAGACACAGAGCTGTTGCAAAACAGTAAATGGATTTTCAAAATGTAGACCGTATATTAAAGGGATTTTTGGAATAGGGAGATGGAataggggcttgctccgtccactccacgcatcgacctggtattgcagtacctccaggAACGGTGCACCCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237422 lncRNA upstream 2252 97655167 ~ 97688536 (+) False G209660
TU237423 lncRNA upstream 2252 97656702 ~ 97688536 (+) True G209660
TU237400 lncRNA upstream 9585 97619792 ~ 97681203 (+) True G209648
TU237416 lncRNA upstream 10638 97644207 ~ 97680150 (+) True G209656
TU237412 lncRNA upstream 16615 97638124 ~ 97674173 (+) True G209652
TU237428 lncRNA downstream 8812 97699813 ~ 97700168 (+) True G209665
TU237429 lncRNA downstream 11819 97702820 ~ 97706607 (+) True G209666
TU237379 lncRNA downstream 18383 97709384 ~ 97745608 (+) False G209629
TU237432 lncRNA downstream 24107 97715108 ~ 97753268 (+) True G209667
TU237435 lncRNA downstream 25799 97716800 ~ 97755407 (+) True G209668
LOC118944223 mRNA upstream 9190 97681490 ~ 97681598 (+) True LOC118944223
XM_036960285.1 mRNA upstream 14165 97633653 ~ 97676623 (+) True LOC110512361
LOC118944206 mRNA upstream 31007 97659568 ~ 97659781 (+) True LOC118944206
LOC118944214 mRNA upstream 44275 97646415 ~ 97646513 (+) True LOC118944214
XM_036960305.1 mRNA upstream 50193 97633653 ~ 97640595 (+) False LOC110512361
XM_036960262.1 mRNA downstream 4938 97695939 ~ 97711108 (+) False LOC110500822
LOC118944224 mRNA downstream 25284 97716285 ~ 97716393 (+) True LOC118944224
LOC118944202 mRNA downstream 31254 97722255 ~ 97722468 (+) True LOC118944202
XM_036960256.1 mRNA downstream 41194 97732195 ~ 97746816 (+) False LOC110512528
XM_036960217.1 mRNA downstream 41203 97732204 ~ 97746816 (+) False LOC110512528
TU237326 other upstream 71699 97618617 ~ 97619089 (+) False G209591
TU237298 other upstream 204016 97486476 ~ 97486772 (+) True G209586
TU236415 other upstream 1077329 96612429 ~ 96613459 (+) True G208836
TU235944 other upstream 1462325 96227793 ~ 96228463 (+) True G208404
TU234200 other upstream 2984540 94705946 ~ 94706248 (+) True G206926
TU237386 other downstream 7110 97698111 ~ 97699776 (+) True LOC110500822
TU237387 other downstream 49060 97740061 ~ 97772765 (+) True G209636
TU237549 other downstream 266243 97957244 ~ 97957836 (+) False G209759
TU238408 other downstream 1006167 98697168 ~ 98700392 (+) True G210408
TU238278 other downstream 1206523 98897524 ~ 98899538 (+) True LOC110510476

Expression Profile