RNA id: XM_036960233.1


Basic Information

Item Value
RNA id XM_036960233.1
length 4010
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC110512528
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 97732195 ~ 97746816 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatagacacttcaaaacgtggcctgctataggacagacacttcaaaacgcgaCCTATCTGTTTCTACACGTACTACTGCACGTCTGAGCTCCAGAAGCCCAGGCCACTTTGGAGAATTTAAACTATGAATGAAACACAGAACACGTATTGGAATTGTTTAGTAAACCAGATGAAGAAATAATTGAAAGGTTAGAGTAGACCTATGTTCAGAGATTAACTTCCACAATCTATGTTTACaagccattcaaaatgtatttcatgTGACGTTAAAATGGTGAGAGGCCAGTATGATTTTAACCCCTTGGGTACCTTACAATCACAGCCATCCTGAAACTGCCGGGTAGGGCAACAGGTACGCATGCTTTTTCCTCGTGTGTATGTTTTCTTCAAATGATGACACTAGTGCAGACCTCTGCGTAGTTTGATCTGTCGACCTAACGAGCTACATGTATTTGGGTCAGAGGAGACATTGTTTTCCTGTACCTTTAAGAGTGGGGCGCAGTGTGCAGGACTACACTGGGGACGTAATTCAAACACTTGGCTCCTCCTAATTTTACGGTTTCGTTTCCTGGAGGTCGAGCCTATCGTGTTGTTGACAAAAAAACGTAACAAATATCGTTTTTTACTGGGCAAAATGGGTCAGTCGTTGCCGACCCCGGACTGCGAGCCCTCGGTGTGTCCTTTGTGCCACGGTATATGTCGGAATCCGACTGCGCTGAGATGCAAACATATTTTCTGCTACTGCTGTATACAGGAGTTATGGAGTGGTTCGCCCACCGGTCCATACTACTGCCCCGAGTGCAAGGAGGAGTACAAGACATTACCGGTGGGGTTCAAGAGAGACACTACCGCAAGTCCGTGGCGACATGAAGCGCCTGCACATACACGCACCAGCTCAGCGACAGAAGGCAGAGCCAATGAAGAGGATGTCATTGAGATAAATTCAGCGGGCTGGACCCTTGGGAAGAGAGCCTCCATCTCTCAATCCAAGCGTCTGTTAGGGAAGAGACCAGCCAGTTCTCCTGTCCCAGGAGGCCATCTTCACGACAACAAGAGACAAGCGACTGgcagctcctcttcctcccactccAGGGGACGGTCTGGTGACCGTAAGAGACCCGccacatcctcttcctcctcttcagccaATCAGAACACGTCGTCTGACGTCGAGTTGTCCAGTGAGGAGGAGGTGCCAGCAGCACCATTCTCCTTAGCAACCAAACCGCCTAGTACTGCGTCCGTCGCCGTCAGAGGTCCGGACCTGACACGTGATAGGTCTAGGTCCCCTAGGAGAGACCCACCCATTGAGCTGGACGAACCCCCTGCTGCAACAGAACCTCTTACAAGAGAACCACTGAATGACCCTAGAAAATCACCTGAAGCAGCAGCAGGTCACATGACCAACACATCGCCAAGAAGAATCACCACCGTTGAGCTGGACCCACCTCCACCCCCTGCAAGAGATCCGTACACACCCGCCAAGAATCCTGCTGAAACGACCATAACAACCCATTTACGTTTAGTCACCCCTACGAAGGAGAAGCCTGTTGAAGCTGAGCGGGAGCCTCTTCCAGAGATCTCCAACAGATCTGGTCCAATCGGCACCTCCACCTCTCCTACCCGTGCTGCCAACAACCTGTCCCCTGGACGTACCAACCTGTCCCCCAGCCTGGCTCGTCAAACCTCTAGGGAGACCTTCCTACCCTGCCACTATTGCCCCAGCCAGGGCTCTCTCCCTGCGGTgaagacctgcctggtgtgtggaGCCTCCATGTGCTCCGACCACCTCCGGCCTCACCTGGAGTCCCCTGTCTTCCAGAGCCACACCCTGGTACCCCCTGTGGAGGACACCTCACCCTGGAGGTGCCCGGAACACCAGGAGATGAACCGAATCTACTGccgtcagtgtagtgtgtgtgtctgtaccgtGTGTACCGTGATCGGGTCGCACCGGGACCACGCTTGCGTCAGCATCAGAGAGGCCGAGAGGGAGCTGAGGGGGAACCTGAAACAGGAGATGAAGAAGATGCAGGGAGCGGAACAGTCTTTAATCAGCAGAGTGACTGAGATGACAGAGAAGAAACAGAGATTCCAGGTGTCGTCAACAACGTAAAAGGAATTGATGCCATAAGCCAGTCTTCTAAAGATGAGTTCACAGAGTTTGAAAAGTTGTTAAGACAAGAAATCACCTTTTGAGACTTCAATACACTATTCCGGCTTCCTAGAGTCCTTGTTTCGAGACCTCTGTCTCTCATTGGAGGTAGAGGACTTGAAGAAAGTCAGCAACTCCCACAGTCTTACTAAGTGAAAAACAGAAACAAGAAAAGCAGCTGAATAAagggaagaagaaaaagaaaggtCTGGTTGCTGCCGGAGGGATGAAGTCCAAGATGAAGGATGACCTATCGGACTACGGAGAGTTCGATGGAGGTTACGCACAAGACTACGAGGACTTCATGTGACGTGACACCAACCCGATTTCTGTATCTCAAacgacaccctgttccctatgtagaaccctttatataggggatagggtggcaTTTAGTAGGGTTCCACTGTCTGTCCCCATTCCCCCTCCGCTCTGCTCCACCCAGCCCCCTCAGAGCATGACCTATGACCTATTCTACTGCCCAGAGCCATCCAATGATAACCACCCTTATGTCGCCAGCCGCACACAAACTCGATTCTGAAAAGAAGTGTTGAATGGTTTGACGAGGAACGTCTGATTTCAACAGGTTGTCTCTCCTCGTTAGAAATTCCTTCAACGATTCCTCGAAACTGACTGACCAATAAGACTGTGTTCTAGATACCAAAATGTTTCACCTCCCATAATGATGCGAAAACCCAGCATCaaacttgttttttttccccaaTCCTAGAATGAATTTAATTTGATCTTTTAAAAGAAATGATCTGTCAAACAACATTTAATTGTTACTGTTTGACgaaggaaaatacattttgtgttCCGTGCAAATCAGATTATTACTATTTTTCTCAAGTataaattaaatatttgttttactcAAAGGATGGCTATTGGCATTCTGAAATATAATACTACATTGTTATGTAAAGAATTTAGTTCTCCAAATGTCAGTTCGGTGCTCTTCACATATTACACATATATATTGATCCTTGACATCATAGTATTTTTCAGGAGAAAATGTCCAAATAAGTCAAGGAGTTTAGGACCAGTTGAGAAAAGCAACATTGAGATGAACATGTTAGATAAATTCAGGACTCGGTTTGCATGGTCACATAGTCtacaaatatttttttggggggtgaatTCCTAAATTCCGTGTTTCTAGAATGTTTAAAGATTGATTACTTCTAGTTGTAAGGAGGGTAATATCGCCCTGAACATTCTTCCCCCTACATTATTTACATTTTCTAggagaataatacaaaatgttaCGATAAAGTAATTTAAGGCTAGGAAGTATTGAAGCCACACAAGTCAATGTGTGAACAGAGGCCCATATACTGCTGAAATGAATATGATGTAACCATAGTCTTAACTGTTCGTGTATTTTAATGGAGGAATGATGGCGCTGAAAATAATCTGTTATGTAGCATTTCAATAAATAGTCGTAGGGTCAAGTAGAAAACACGGCGCTGACCATTTCATCCTGGGCCTATGTTCACAAAACATCTGAGTAGATacgctgatctagaatcagatgCTCCCCCccttcttattcattatgatcagaaaaggctaaactgatcctagagcaGCACTGCTACACTGAGAAACCCAGTATAATCGCTTCCACTGAGTTGAAGCAACAATCAGTCTAGGTCTCCTTGGCATAACTTTGCACGGCTTGTATCAAGTGAGGTGAGAAACAGACCAAATGTATTTAGGAAAGAAGGTTGTACTGGGTTATTATCACTTGTTTTTCTTTTTCACAGCACATTTTCAGGATTGGTAATATAAACAATATTAAAGATTAAAGTTGTCTTATTTTATCCACCTAATTTAATAAAATCACTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237408 lncRNA upstream 23548 97673008 ~ 97708658 (+) True G209651
TU237429 lncRNA upstream 25599 97702820 ~ 97706607 (+) True G209666
TU237428 lncRNA upstream 32038 97699813 ~ 97700168 (+) True G209665
TU237422 lncRNA upstream 43670 97655167 ~ 97688536 (+) False G209660
TU237423 lncRNA upstream 43670 97656702 ~ 97688536 (+) True G209660
TU237442 lncRNA downstream 12969 97759785 ~ 97761071 (+) True LOC118944204
TU237449 lncRNA downstream 40575 97787391 ~ 97787596 (+) True G209680
TU237456 lncRNA downstream 48404 97795220 ~ 97796264 (+) True G209687
TU237461 lncRNA downstream 54842 97801658 ~ 97801889 (+) True G209692
TU237462 lncRNA downstream 55395 97802211 ~ 97802612 (+) True G209693
LOC118944202 mRNA upstream 9738 97722255 ~ 97722468 (+) True LOC118944202
LOC118944224 mRNA upstream 15813 97716285 ~ 97716393 (+) True LOC118944224
XM_036960262.1 mRNA upstream 21098 97695939 ~ 97711108 (+) False LOC110500822
LOC118944201 mRNA upstream 41205 97690788 ~ 97691001 (+) True LOC118944201
LOC118944223 mRNA upstream 50608 97681490 ~ 97681598 (+) True LOC118944223
LOC118944218 mRNA downstream 7358 97754174 ~ 97754272 (+) True LOC118944218
LOC118944204 mRNA downstream 13329 97760145 ~ 97760358 (+) False LOC118944204
XM_036960337.1 mRNA downstream 19752 97766568 ~ 97779525 (+) True si:dkey-29p10.4
XM_036960342.1 mRNA downstream 158052 97904868 ~ 98015151 (+) False LOC110500615
XM_036960346.1 mRNA downstream 158052 97904868 ~ 98015152 (+) True LOC110500615
TU237386 other upstream 32430 97698111 ~ 97699776 (+) True LOC110500822
TU237326 other upstream 113117 97618617 ~ 97619089 (+) False G209591
TU237298 other upstream 245434 97486476 ~ 97486772 (+) True G209586
TU236415 other upstream 1118747 96612429 ~ 96613459 (+) True G208836
TU235944 other upstream 1503743 96227793 ~ 96228463 (+) True G208404
TU237549 other downstream 210428 97957244 ~ 97957836 (+) False G209759
TU238408 other downstream 950352 98697168 ~ 98700392 (+) True G210408
TU238278 other downstream 1150708 98897524 ~ 98899538 (+) True LOC110510476
TU238516 other downstream 1155972 98902788 ~ 98926406 (+) True G210484
TU238947 other downstream 1490562 99237378 ~ 99238258 (+) True G210823

Expression Profile